Wall clock time and date at job start Sat Apr 11 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.61088 * 2 1 4 4 C 1.53370 * 109.75454 * 239.56934 * 2 1 3 5 5 N 1.46963 * 108.63517 * 190.75010 * 4 2 1 6 6 C 1.34776 * 120.59338 * 235.20143 * 5 4 2 7 7 O 1.21907 * 120.00168 * 185.34704 * 6 5 4 8 8 C 1.40395 * 120.00136 * 5.35382 * 6 5 4 9 9 C 1.36442 * 120.00118 * 186.47016 * 8 6 5 10 10 S 1.77242 * 126.26652 * 0.02562 * 9 8 6 11 11 C 1.82381 * 94.47035 * 179.97438 * 10 9 8 12 12 C 1.51121 * 103.49279 * 0.02562 * 11 10 9 13 13 O 1.21253 * 122.89920 * 180.02562 * 12 11 10 14 14 N 1.32210 * 114.20516 * 359.73882 * 12 11 10 15 15 C 1.46502 * 119.82218 * 180.27234 * 14 12 11 16 16 C 1.46964 * 118.81234 * 55.22790 * 5 4 2 17 17 C 1.53815 * 108.57915 * 304.64435 * 16 5 4 18 18 H 1.09007 * 109.75668 * 289.95172 * 17 16 5 19 19 C 1.53000 * 109.69690 * 169.29171 * 17 16 5 20 20 N 1.46968 * 108.39728 * 49.64096 * 17 16 5 21 21 C 1.36927 * 120.59542 * 124.75655 * 20 17 16 22 22 H 1.08000 * 120.00076 * 307.08075 * 21 20 17 23 23 C 1.38820 * 119.99953 * 127.07693 * 21 20 17 24 24 N 1.31620 * 119.99783 * 336.39119 * 23 21 20 25 25 Si 1.86798 * 119.99868 * 156.38947 * 23 21 20 26 26 H 1.48501 * 109.46973 * 180.02562 * 25 23 21 27 27 H 1.48502 * 109.47135 * 299.99806 * 25 23 21 28 28 H 1.48503 * 109.47263 * 60.00197 * 25 23 21 29 29 H 1.08999 * 109.47381 * 308.39893 * 1 2 3 30 30 H 1.09007 * 109.46950 * 68.39981 * 1 2 3 31 31 H 1.09001 * 109.47117 * 188.39440 * 1 2 3 32 32 H 1.09001 * 109.60578 * 310.49031 * 4 2 1 33 33 H 1.08994 * 109.61159 * 70.83155 * 4 2 1 34 34 H 1.08002 * 119.99650 * 6.46614 * 8 6 5 35 35 H 1.08997 * 110.62224 * 118.50548 * 11 10 9 36 36 H 1.08999 * 110.61749 * 241.34267 * 11 10 9 37 37 H 1.09004 * 109.46915 * 270.24220 * 15 14 12 38 38 H 1.08998 * 109.46755 * 30.23879 * 15 14 12 39 39 H 1.08998 * 109.47361 * 150.23920 * 15 14 12 40 40 H 1.09001 * 109.61705 * 64.51641 * 16 5 4 41 41 H 1.09005 * 109.60889 * 184.85962 * 16 5 4 42 42 H 1.08998 * 109.47222 * 304.09760 * 19 17 16 43 43 H 1.09004 * 109.47121 * 64.09953 * 19 17 16 44 44 H 1.09002 * 109.47090 * 184.09581 * 19 17 16 45 45 H 0.97001 * 119.99357 * 175.10621 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0484 -0.7311 -1.2446 5 7 3.4947 -0.9447 -1.0954 6 6 4.3534 -0.5076 -2.0377 7 8 5.5398 -0.7750 -1.9525 8 6 3.8818 0.2558 -3.1174 9 6 4.7240 0.5864 -4.1387 10 16 6.4348 0.1426 -4.2723 11 6 6.6763 0.9868 -5.8708 12 6 5.3157 1.5729 -6.1691 13 8 5.0812 2.2178 -7.1688 14 7 4.4015 1.3167 -5.2490 15 6 3.0366 1.8216 -5.4176 16 6 3.9879 -1.6440 0.0994 17 6 3.4700 -0.9079 1.3468 18 1 3.9707 0.0557 1.4404 19 6 3.7388 -1.7535 2.5932 20 7 2.0231 -0.6993 1.1949 21 6 1.1507 -1.1435 2.1523 22 1 1.1821 -2.1735 2.4754 23 6 0.2258 -0.2698 2.7075 24 7 0.4544 1.0264 2.6940 25 14 -1.3431 -0.9336 3.4737 26 1 -2.1574 0.1953 3.9913 27 1 -2.1203 -1.6741 2.4476 28 1 -0.9994 -1.8496 4.5909 29 1 -0.3634 0.6383 0.8054 30 1 -0.3633 0.3783 -0.9556 31 1 -0.3633 -1.0167 0.1500 32 1 1.5445 -1.6929 -1.3402 33 1 1.8547 -0.1270 -2.1309 34 1 2.8522 0.5813 -3.1396 35 1 7.4221 1.7763 -5.7791 36 1 6.9673 0.2732 -6.6416 37 1 2.9570 2.8109 -4.9670 38 1 2.8019 1.8862 -6.4800 39 1 2.3356 1.1433 -4.9312 40 1 3.6221 -2.6708 0.0995 41 1 5.0779 -1.6440 0.0995 42 1 3.2874 -2.7378 2.4689 43 1 4.8143 -1.8621 2.7337 44 1 3.3062 -1.2630 3.4653 45 1 -0.2224 1.6415 3.0172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898132536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:48 Heat of formation + Delta-G solvation = 10.383512 kcal Electronic energy + Delta-G solvation = -28244.791534 eV Core-core repulsion = 24391.084882 eV Total energy + Delta-G solvation = -3853.706652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31239 -39.85897 -37.59913 -37.00546 -34.18263 -33.16915 -31.75521 -31.27633 -31.15011 -27.87204 -27.36763 -26.31101 -25.72617 -24.33777 -23.05989 -20.54597 -20.30907 -19.79479 -18.99338 -18.12316 -17.23125 -16.99235 -16.62401 -15.97832 -15.82582 -15.13169 -14.80721 -14.64181 -14.51190 -14.42387 -14.23438 -13.77603 -13.61027 -13.12437 -13.05461 -12.76727 -12.63903 -12.47205 -11.94267 -11.78686 -11.58470 -11.53853 -11.38174 -11.26458 -11.01720 -10.76879 -10.62499 -10.55853 -10.48828 -10.36643 -10.06119 -9.96026 -9.76360 -9.29427 -9.10857 -8.43894 -8.08220 -7.70895 -6.48584 -5.79835 -3.61255 0.64326 0.98549 1.53762 2.06146 2.27958 3.28639 3.35878 3.38395 3.46681 3.55775 3.73942 4.38565 4.58824 4.70114 4.81005 4.93880 4.99217 5.05577 5.19687 5.28228 5.38087 5.42208 5.70494 5.74335 5.78863 6.00551 6.05021 6.11542 6.20338 6.35722 6.41731 6.49831 6.53248 6.56720 6.65906 6.78286 6.97229 7.09599 7.17238 7.26196 7.33446 7.56830 7.78228 7.91947 8.52716 8.53540 9.10559 9.64686 10.41907 11.07534 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.003056 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.562603 B = 9161.229557 C =10186.893484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.181 3.819 3 H 0.032 0.968 4 C 0.087 3.913 5 N -0.589 5.589 6 C 0.553 3.447 7 O -0.554 6.554 8 C -0.239 4.239 9 C 0.169 3.831 10 S 0.030 5.970 11 C -0.195 4.195 12 C 0.525 3.475 13 O -0.495 6.495 14 N -0.546 5.546 15 C 0.064 3.936 16 C 0.102 3.898 17 C 0.156 3.844 18 H 0.030 0.970 19 C -0.127 4.127 20 N -0.576 5.576 21 C -0.267 4.267 22 H 0.054 0.946 23 C 0.039 3.961 24 N -0.869 5.869 25 Si 0.879 3.121 26 H -0.290 1.290 27 H -0.278 1.278 28 H -0.278 1.278 29 H 0.089 0.911 30 H 0.023 0.977 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.479 -0.514 -14.582 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.074 3.926 3 H 0.049 0.951 4 C -0.037 4.037 5 N -0.319 5.319 6 C 0.345 3.655 7 O -0.438 6.438 8 C -0.277 4.277 9 C -0.044 4.044 10 S 0.271 5.729 11 C -0.346 4.346 12 C 0.312 3.688 13 O -0.369 6.369 14 N -0.268 5.268 15 C -0.080 4.080 16 C -0.022 4.022 17 C 0.049 3.951 18 H 0.047 0.953 19 C -0.185 4.185 20 N -0.300 5.300 21 C -0.396 4.396 22 H 0.072 0.928 23 C -0.163 4.163 24 N -0.508 5.508 25 Si 0.706 3.294 26 H -0.216 1.216 27 H -0.204 1.204 28 H -0.204 1.204 29 H 0.108 0.892 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.814 -0.760 -14.359 16.365 hybrid contribution -2.099 0.619 -0.338 2.214 sum 5.715 -0.142 -14.697 15.770 Atomic orbital electron populations 1.22027 0.95012 1.03057 1.00207 1.20603 0.93747 0.93560 0.84675 0.95067 1.22699 0.79441 1.01185 1.00392 1.47776 1.07191 1.56146 1.20770 1.16155 0.86002 0.80517 0.82782 1.90739 1.15947 1.59985 1.77161 1.20914 1.00532 1.10190 0.96058 1.22376 0.98366 0.94273 0.89412 1.88038 1.02147 1.64234 1.18472 1.24720 0.98876 1.06537 1.04420 1.19818 0.86082 0.80227 0.82629 1.90801 1.81785 1.38353 1.25949 1.44635 1.13518 1.49516 1.19166 1.22145 0.80305 1.00873 1.04630 1.22381 0.99384 0.95486 0.84915 1.20978 0.87113 0.95529 0.91473 0.95272 1.21649 0.98332 0.99898 0.98652 1.43990 0.99449 1.67642 1.18954 1.18627 1.12700 0.92474 1.15791 0.92833 1.25473 1.00411 0.95169 0.95274 1.70233 1.32433 1.01616 1.46559 0.86799 0.84421 0.78489 0.79643 1.21569 1.20407 1.20404 0.89222 0.95791 0.92621 0.91557 0.91198 0.83319 0.83961 0.84012 0.90474 0.89119 0.89178 0.92072 0.90057 0.93060 0.94385 0.91213 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 7.82 37.16 0.29 -2.64 16 2 C 0.18 3.73 3.27 -67.48 -0.22 3.51 16 3 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.09 1.46 5.80 -3.60 -0.02 1.44 16 5 N -0.59 -10.34 2.95 -176.02 -0.52 -10.86 16 6 C 0.55 9.39 7.41 -15.45 -0.11 9.27 16 7 O -0.55 -10.47 13.57 5.00 0.07 -10.40 16 8 C -0.24 -3.27 8.52 -39.42 -0.34 -3.60 16 9 C 0.17 2.12 6.99 -16.01 -0.11 2.01 16 10 S 0.03 0.36 20.67 -107.50 -2.22 -1.86 16 11 C -0.20 -1.67 7.36 36.21 0.27 -1.40 16 12 C 0.53 5.82 7.79 -11.91 -0.09 5.72 16 13 O -0.49 -6.62 16.94 5.58 0.09 -6.53 16 14 N -0.55 -5.96 2.95 -122.27 -0.36 -6.32 16 15 C 0.06 0.55 10.06 59.85 0.60 1.15 16 16 C 0.10 1.87 5.92 -3.36 -0.02 1.85 16 17 C 0.16 3.22 3.67 -67.25 -0.25 2.97 16 18 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 19 C -0.13 -2.42 8.19 37.16 0.30 -2.12 16 20 N -0.58 -13.11 2.75 -156.75 -0.43 -13.54 16 21 C -0.27 -6.57 6.57 -15.06 -0.10 -6.67 16 22 H 0.05 1.35 7.26 -52.49 -0.38 0.97 16 23 C 0.04 0.99 3.12 -17.43 -0.05 0.94 16 24 N -0.87 -23.17 11.83 55.49 0.66 -22.52 16 25 Si 0.88 19.76 29.62 -169.99 -5.03 14.73 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 29 H 0.09 2.08 4.97 -51.93 -0.26 1.82 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 1.16 7.51 -51.93 -0.39 0.77 16 32 H 0.07 1.11 8.12 -51.93 -0.42 0.68 16 33 H 0.07 0.95 5.31 -51.93 -0.28 0.67 16 34 H 0.15 1.72 4.44 -52.49 -0.23 1.49 16 35 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.74 7.50 -51.93 -0.39 0.35 16 39 H 0.09 0.64 6.61 -51.93 -0.34 0.30 16 40 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 41 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 42 H 0.05 0.95 7.64 -51.93 -0.40 0.55 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.48 7.57 -51.93 -0.39 1.09 16 45 H 0.25 6.62 8.32 -40.82 -0.34 6.28 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -30.13 362.46 -8.50 -38.63 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.36 Total: 0.79 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 0.15 Total: 12.43 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.65 Total: -53.24 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.16 Total: -16.93 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.22 Total: -1.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.13 -8.50 -38.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898132536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.012 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds