Wall clock time and date at job start Sat Apr 11 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.61088 * 2 1 4 4 C 1.53370 * 109.75454 * 239.56934 * 2 1 3 5 5 N 1.46963 * 108.63517 * 190.75010 * 4 2 1 6 6 C 1.34776 * 120.59338 * 235.20143 * 5 4 2 7 7 O 1.21907 * 120.00168 * 185.34704 * 6 5 4 8 8 C 1.40395 * 120.00136 * 5.35382 * 6 5 4 9 9 C 1.36442 * 120.00118 * 186.47016 * 8 6 5 10 10 S 1.77242 * 126.26652 * 0.02562 * 9 8 6 11 11 C 1.82381 * 94.47035 * 179.97438 * 10 9 8 12 12 C 1.51121 * 103.49279 * 0.02562 * 11 10 9 13 13 O 1.21253 * 122.89920 * 180.02562 * 12 11 10 14 14 N 1.32210 * 114.20516 * 359.73882 * 12 11 10 15 15 C 1.46502 * 119.82218 * 180.27234 * 14 12 11 16 16 C 1.46964 * 118.81234 * 55.22790 * 5 4 2 17 17 C 1.53815 * 108.57915 * 304.64435 * 16 5 4 18 18 H 1.09007 * 109.75668 * 289.95172 * 17 16 5 19 19 C 1.53000 * 109.69690 * 169.29171 * 17 16 5 20 20 N 1.46968 * 108.39728 * 49.64096 * 17 16 5 21 21 C 1.36927 * 120.59542 * 124.75655 * 20 17 16 22 22 H 1.08000 * 120.00076 * 307.08075 * 21 20 17 23 23 C 1.38820 * 119.99953 * 127.07693 * 21 20 17 24 24 N 1.31620 * 119.99783 * 336.39119 * 23 21 20 25 25 Si 1.86798 * 119.99868 * 156.38947 * 23 21 20 26 26 H 1.48501 * 109.46973 * 180.02562 * 25 23 21 27 27 H 1.48502 * 109.47135 * 299.99806 * 25 23 21 28 28 H 1.48503 * 109.47263 * 60.00197 * 25 23 21 29 29 H 1.08999 * 109.47381 * 308.39893 * 1 2 3 30 30 H 1.09007 * 109.46950 * 68.39981 * 1 2 3 31 31 H 1.09001 * 109.47117 * 188.39440 * 1 2 3 32 32 H 1.09001 * 109.60578 * 310.49031 * 4 2 1 33 33 H 1.08994 * 109.61159 * 70.83155 * 4 2 1 34 34 H 1.08002 * 119.99650 * 6.46614 * 8 6 5 35 35 H 1.08997 * 110.62224 * 118.50548 * 11 10 9 36 36 H 1.08999 * 110.61749 * 241.34267 * 11 10 9 37 37 H 1.09004 * 109.46915 * 270.24220 * 15 14 12 38 38 H 1.08998 * 109.46755 * 30.23879 * 15 14 12 39 39 H 1.08998 * 109.47361 * 150.23920 * 15 14 12 40 40 H 1.09001 * 109.61705 * 64.51641 * 16 5 4 41 41 H 1.09005 * 109.60889 * 184.85962 * 16 5 4 42 42 H 1.08998 * 109.47222 * 304.09760 * 19 17 16 43 43 H 1.09004 * 109.47121 * 64.09953 * 19 17 16 44 44 H 1.09002 * 109.47090 * 184.09581 * 19 17 16 45 45 H 0.97001 * 119.99357 * 175.10621 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0484 -0.7311 -1.2446 5 7 3.4947 -0.9447 -1.0954 6 6 4.3534 -0.5076 -2.0377 7 8 5.5398 -0.7750 -1.9525 8 6 3.8818 0.2558 -3.1174 9 6 4.7240 0.5864 -4.1387 10 16 6.4348 0.1426 -4.2723 11 6 6.6763 0.9868 -5.8708 12 6 5.3157 1.5729 -6.1691 13 8 5.0812 2.2178 -7.1688 14 7 4.4015 1.3167 -5.2490 15 6 3.0366 1.8216 -5.4176 16 6 3.9879 -1.6440 0.0994 17 6 3.4700 -0.9079 1.3468 18 1 3.9707 0.0557 1.4404 19 6 3.7388 -1.7535 2.5932 20 7 2.0231 -0.6993 1.1949 21 6 1.1507 -1.1435 2.1523 22 1 1.1821 -2.1735 2.4754 23 6 0.2258 -0.2698 2.7075 24 7 0.4544 1.0264 2.6940 25 14 -1.3431 -0.9336 3.4737 26 1 -2.1574 0.1953 3.9913 27 1 -2.1203 -1.6741 2.4476 28 1 -0.9994 -1.8496 4.5909 29 1 -0.3634 0.6383 0.8054 30 1 -0.3633 0.3783 -0.9556 31 1 -0.3633 -1.0167 0.1500 32 1 1.5445 -1.6929 -1.3402 33 1 1.8547 -0.1270 -2.1309 34 1 2.8522 0.5813 -3.1396 35 1 7.4221 1.7763 -5.7791 36 1 6.9673 0.2732 -6.6416 37 1 2.9570 2.8109 -4.9670 38 1 2.8019 1.8862 -6.4800 39 1 2.3356 1.1433 -4.9312 40 1 3.6221 -2.6708 0.0995 41 1 5.0779 -1.6440 0.0995 42 1 3.2874 -2.7378 2.4689 43 1 4.8143 -1.8621 2.7337 44 1 3.3062 -1.2630 3.4653 45 1 -0.2224 1.6415 3.0172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898132536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:47 Heat of formation + Delta-G solvation = -7.661845 kcal Electronic energy + Delta-G solvation = -28245.574039 eV Core-core repulsion = 24391.084882 eV Total energy + Delta-G solvation = -3854.489157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.21081 -41.18006 -39.03107 -38.07190 -35.75227 -34.72800 -33.02498 -32.77113 -32.00596 -29.53021 -28.35533 -27.53617 -27.26315 -25.82658 -24.35819 -22.03963 -21.57900 -21.07017 -20.29284 -19.19140 -18.33087 -18.00972 -17.83600 -17.45344 -17.03233 -16.71211 -16.25669 -16.11531 -15.74028 -15.50524 -15.31952 -14.96197 -14.93861 -14.75262 -14.12532 -13.82940 -13.78484 -13.42092 -13.34575 -13.23076 -13.20189 -12.83161 -12.68080 -12.58635 -12.37946 -12.30016 -12.26573 -12.18693 -12.09217 -11.71781 -11.62438 -11.55712 -11.37681 -10.55527 -10.14262 -10.03996 -9.62744 -8.78032 -8.36005 -7.65515 -5.54759 -0.37626 0.07438 0.71088 1.16584 1.39142 1.48716 1.53004 1.57329 2.25468 2.33740 2.54530 2.81683 3.25225 3.54987 3.83785 3.99343 4.07337 4.17004 4.18364 4.23182 4.34703 4.37038 4.40910 4.51119 4.56991 4.65980 4.70015 4.76034 4.81085 4.88214 4.91326 4.97795 5.00113 5.07814 5.24172 5.43099 5.48541 5.61274 5.66743 5.73146 5.78926 5.93910 6.30478 6.59715 6.60516 7.23910 7.27114 7.82237 8.55894 9.15180 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.003056 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.562603 B = 9161.229557 C =10186.893484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.178 3.822 3 H 0.002 0.998 4 C 0.101 3.899 5 N -0.599 5.599 6 C 0.552 3.448 7 O -0.580 6.580 8 C -0.260 4.260 9 C 0.189 3.811 10 S -0.006 6.006 11 C -0.176 4.176 12 C 0.524 3.476 13 O -0.517 6.517 14 N -0.546 5.546 15 C 0.055 3.945 16 C 0.116 3.884 17 C 0.151 3.849 18 H -0.001 1.001 19 C -0.117 4.117 20 N -0.591 5.591 21 C -0.264 4.264 22 H 0.048 0.952 23 C 0.005 3.995 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.297 1.297 27 H -0.269 1.269 28 H -0.279 1.279 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.579 -1.080 -16.873 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.072 3.928 3 H 0.020 0.980 4 C -0.023 4.023 5 N -0.329 5.329 6 C 0.346 3.654 7 O -0.466 6.466 8 C -0.298 4.298 9 C -0.026 4.026 10 S 0.236 5.764 11 C -0.326 4.326 12 C 0.312 3.688 13 O -0.393 6.393 14 N -0.267 5.267 15 C -0.087 4.087 16 C -0.009 4.009 17 C 0.045 3.955 18 H 0.017 0.983 19 C -0.175 4.175 20 N -0.316 5.316 21 C -0.394 4.394 22 H 0.066 0.934 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.223 1.223 27 H -0.195 1.195 28 H -0.205 1.205 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.186 0.814 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.915 -1.341 -16.670 18.502 hybrid contribution -1.989 0.865 0.269 2.186 sum 5.926 -0.476 -16.401 17.445 Atomic orbital electron populations 1.21890 0.94690 1.01913 1.01076 1.20621 0.94101 0.92354 0.85760 0.98049 1.22532 0.78853 1.01460 0.99467 1.47823 1.07646 1.56613 1.20774 1.16546 0.85542 0.80186 0.83162 1.90734 1.16912 1.60931 1.77975 1.20719 1.01751 1.11535 0.95791 1.22377 0.98174 0.92875 0.89170 1.88194 1.02367 1.64628 1.21168 1.24847 0.98060 1.07171 1.02473 1.20178 0.86802 0.79683 0.82122 1.90804 1.82269 1.39433 1.26801 1.44790 1.14558 1.48847 1.18507 1.22378 0.79432 1.01656 1.05261 1.22085 0.99173 0.95347 0.84271 1.21045 0.86115 0.94755 0.93594 0.98309 1.21536 0.99995 0.99296 0.96678 1.44273 1.00039 1.67673 1.19610 1.18737 1.12747 0.92111 1.15832 0.93446 1.25947 1.02509 0.95147 0.95854 1.70329 1.33011 1.02611 1.48449 0.85980 0.81704 0.77569 0.78985 1.22295 1.19474 1.20492 0.92268 0.92124 0.93413 0.90983 0.87575 0.81364 0.81600 0.81301 0.89806 0.88717 0.87504 0.91465 0.90106 0.92569 0.91660 0.94063 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 7.82 71.98 0.56 -4.89 16 2 C 0.18 7.29 3.27 45.02 0.15 7.44 16 3 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 4 C 0.10 3.18 5.80 86.42 0.50 3.68 16 5 N -0.60 -20.40 2.95 -828.92 -2.44 -22.85 16 6 C 0.55 18.07 7.41 84.77 0.63 18.69 16 7 O -0.58 -21.53 13.57 -5.01 -0.07 -21.59 16 8 C -0.26 -6.58 8.52 22.38 0.19 -6.39 16 9 C 0.19 4.33 6.99 83.51 0.58 4.92 16 10 S -0.01 -0.12 20.67 -56.49 -1.17 -1.29 16 11 C -0.18 -2.44 7.36 71.37 0.53 -1.92 16 12 C 0.52 10.19 7.79 88.19 0.69 10.88 16 13 O -0.52 -12.61 16.94 -2.95 -0.05 -12.66 16 14 N -0.55 -10.52 2.95 -660.56 -1.95 -12.47 16 15 C 0.06 0.80 10.06 127.77 1.29 2.08 16 16 C 0.12 4.18 5.92 86.57 0.51 4.70 16 17 C 0.15 6.37 3.67 45.18 0.17 6.53 16 18 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 19 C -0.12 -4.49 8.19 71.98 0.59 -3.90 16 20 N -0.59 -27.23 2.75 -649.85 -1.79 -29.02 16 21 C -0.26 -13.18 6.57 84.04 0.55 -12.63 16 22 H 0.05 2.41 7.26 -2.91 -0.02 2.39 16 23 C 0.01 0.27 3.12 84.86 0.27 0.53 16 24 N -0.90 -49.43 11.83 21.65 0.26 -49.17 16 25 Si 0.93 40.97 29.62 68.60 2.03 43.01 16 26 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 29 H 0.06 2.75 4.97 -2.39 -0.01 2.74 16 30 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.05 1.93 7.51 -2.39 -0.02 1.91 16 32 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 33 H 0.11 2.56 5.31 -2.39 -0.01 2.54 16 34 H 0.17 3.39 4.44 -2.91 -0.01 3.38 16 35 H 0.17 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.31 7.50 -2.39 -0.02 1.30 16 39 H 0.11 1.17 6.61 -2.39 -0.02 1.16 16 40 H 0.07 2.34 8.12 -2.39 -0.02 2.33 16 41 H 0.08 2.92 7.02 -2.38 -0.02 2.91 16 42 H 0.06 2.07 7.64 -2.39 -0.02 2.05 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.04 1.78 7.57 -2.39 -0.02 1.77 16 45 H 0.25 13.39 8.32 -92.71 -0.77 12.62 16 Total: -1.00 -66.70 362.46 3.03 -63.67 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.01 Total: 12.66 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 7.20 Total: 29.72 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -5.92 Total: -113.51 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.12 Total: -34.25 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.17 Total: -1.29 kcal Total: -66.70 3.03 -63.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898132536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.007 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds