Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.74723 * 2 1 4 4 C 1.53375 * 109.60834 * 239.57617 * 2 1 3 5 5 N 1.46971 * 108.63262 * 190.82917 * 4 2 1 6 6 C 1.34775 * 120.59337 * 235.20006 * 5 4 2 7 7 O 1.21903 * 119.99755 * 184.61001 * 6 5 4 8 8 C 1.40391 * 119.99870 * 4.33550 * 6 5 4 9 9 C 1.36446 * 120.00013 * 174.65534 * 8 6 5 10 10 S 1.77255 * 126.26442 * 0.02562 * 9 8 6 11 11 C 1.82390 * 94.46770 * 179.97438 * 10 9 8 12 12 C 1.51113 * 103.49311 * 359.97438 * 11 10 9 13 13 O 1.21254 * 122.89459 * 180.02562 * 12 11 10 14 14 N 1.32212 * 114.20803 * 359.75568 * 12 11 10 15 15 C 1.46497 * 119.82018 * 180.27769 * 14 12 11 16 16 C 1.46963 * 118.81109 * 55.48397 * 5 4 2 17 17 C 1.53819 * 108.39471 * 304.47587 * 16 5 4 18 18 H 1.09003 * 109.52877 * 169.30087 * 17 16 5 19 19 C 1.52991 * 109.88316 * 289.76856 * 17 16 5 20 20 N 1.46960 * 109.61114 * 120.43197 * 2 1 3 21 21 C 1.36936 * 120.59699 * 354.98978 * 20 2 1 22 22 H 1.08006 * 119.99608 * 38.28194 * 21 20 2 23 23 C 1.38806 * 120.00247 * 218.28774 * 21 20 2 24 24 N 1.31618 * 120.00182 * 0.22238 * 23 21 20 25 25 Si 1.86800 * 120.00054 * 180.22569 * 23 21 20 26 26 H 1.48497 * 109.47179 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47187 * 119.99987 * 25 23 21 28 28 H 1.48500 * 109.47238 * 240.00083 * 25 23 21 29 29 H 1.08999 * 109.47417 * 180.42769 * 1 2 3 30 30 H 1.09006 * 109.46836 * 300.42464 * 1 2 3 31 31 H 1.09001 * 109.47012 * 60.42028 * 1 2 3 32 32 H 1.09003 * 109.61163 * 71.08851 * 4 2 1 33 33 H 1.08999 * 109.61180 * 310.57555 * 4 2 1 34 34 H 1.07999 * 120.00820 * 354.65004 * 8 6 5 35 35 H 1.08990 * 110.61299 * 118.50390 * 11 10 9 36 36 H 1.08999 * 110.61166 * 241.49849 * 11 10 9 37 37 H 1.09000 * 109.47162 * 270.20429 * 15 14 12 38 38 H 1.08994 * 109.47339 * 30.20033 * 15 14 12 39 39 H 1.08997 * 109.47352 * 150.20421 * 15 14 12 40 40 H 1.08998 * 109.61109 * 64.25788 * 16 5 4 41 41 H 1.08999 * 109.60741 * 184.77674 * 16 5 4 42 42 H 1.09006 * 109.46930 * 179.24565 * 19 17 16 43 43 H 1.08998 * 109.47453 * 299.24087 * 19 17 16 44 44 H 1.08996 * 109.47613 * 59.24222 * 19 17 16 45 45 H 0.96998 * 120.00413 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0447 -0.7316 -1.2459 5 7 3.4908 -0.9488 -1.0990 6 6 4.3491 -0.5132 -2.0423 7 8 5.5369 -0.7721 -1.9518 8 6 3.8745 0.2337 -3.1321 9 6 4.7541 0.7673 -4.0284 10 16 6.5199 0.6214 -3.9784 11 6 6.7864 1.6007 -5.4938 12 6 5.3863 1.9725 -5.9241 13 8 5.1555 2.6362 -6.9123 14 7 4.4345 1.5069 -5.1334 15 6 3.0300 1.7893 -5.4396 16 6 3.9836 -1.6550 0.0920 17 6 3.4693 -0.9184 1.3405 18 1 3.6600 -1.5250 2.2259 19 6 4.1796 0.4296 1.4788 20 7 2.0232 -0.7012 1.1936 21 6 1.1511 -1.1446 2.1517 22 1 0.1966 -1.5594 1.8626 23 6 1.4935 -1.0609 3.4942 24 7 2.6547 -0.5513 3.8467 25 14 0.3064 -1.6716 4.8008 26 1 -0.9210 -2.1946 4.1488 27 1 0.9498 -2.7548 5.5869 28 1 -0.0537 -0.5504 5.7054 29 1 -0.3634 -1.0276 0.0077 30 1 -0.3633 0.5205 0.8862 31 1 -0.3633 0.5073 -0.8937 32 1 1.8540 -0.1251 -2.1312 33 1 1.5383 -1.6921 -1.3414 34 1 2.8131 0.3861 -3.2613 35 1 7.3712 2.4941 -5.2755 36 1 7.2755 0.9981 -6.2591 37 1 2.7321 2.7186 -4.9543 38 1 2.9058 1.8866 -6.5180 39 1 2.4072 0.9727 -5.0743 40 1 3.6120 -2.6797 0.0895 41 1 5.0735 -1.6584 0.0903 42 1 3.8007 0.9514 2.3576 43 1 5.2517 0.2660 1.5876 44 1 3.9924 1.0319 0.5898 45 1 2.8942 -0.4931 4.7848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898132537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = 8.397931 kcal Electronic energy + Delta-G solvation = -28394.119570 eV Core-core repulsion = 24540.326817 eV Total energy + Delta-G solvation = -3853.792753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31396 -39.86267 -37.59096 -36.97956 -34.00932 -32.81477 -31.90455 -31.38083 -30.90081 -27.94973 -27.35938 -26.32900 -25.76853 -23.92656 -23.34919 -20.96763 -20.33601 -19.69230 -18.65789 -18.12841 -17.21719 -16.99373 -16.57201 -16.04857 -15.66908 -15.16452 -14.84131 -14.67975 -14.48571 -14.26491 -14.02067 -13.61874 -13.47840 -13.17358 -13.09351 -12.78088 -12.74888 -12.34030 -11.96706 -11.79504 -11.68974 -11.37276 -11.34285 -11.19340 -10.96976 -10.80576 -10.62372 -10.60142 -10.56402 -10.14827 -10.03886 -9.78288 -9.62136 -9.21482 -9.09927 -8.47196 -8.26783 -7.71112 -6.49820 -5.83293 -3.40222 0.65815 1.00291 1.55516 2.06483 2.28108 3.32387 3.40810 3.41720 3.48128 3.62154 3.77089 4.42198 4.60326 4.68317 4.80261 4.92572 4.97807 5.08275 5.25572 5.34829 5.37455 5.41663 5.65423 5.70911 5.77899 5.91815 6.11855 6.16786 6.26067 6.30463 6.39593 6.48363 6.54556 6.69170 6.82661 6.92975 6.95625 7.06338 7.11403 7.17279 7.64883 7.70832 7.80974 7.98523 8.47873 8.59354 9.19365 9.75961 10.38065 11.22435 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.002997 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.322399 B = 9341.154983 C =10048.226249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.154 3.846 3 H 0.031 0.969 4 C 0.093 3.907 5 N -0.585 5.585 6 C 0.552 3.448 7 O -0.552 6.552 8 C -0.240 4.240 9 C 0.168 3.832 10 S 0.033 5.967 11 C -0.196 4.196 12 C 0.525 3.475 13 O -0.495 6.495 14 N -0.546 5.546 15 C 0.065 3.935 16 C 0.093 3.907 17 C 0.181 3.819 18 H 0.107 0.893 19 C -0.136 4.136 20 N -0.581 5.581 21 C -0.256 4.256 22 H 0.066 0.934 23 C 0.014 3.986 24 N -0.895 5.895 25 Si 0.900 3.100 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.020 0.980 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 3.080 -16.750 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.047 3.953 3 H 0.049 0.951 4 C -0.032 4.032 5 N -0.316 5.316 6 C 0.344 3.656 7 O -0.436 6.436 8 C -0.278 4.278 9 C -0.045 4.045 10 S 0.274 5.726 11 C -0.347 4.347 12 C 0.313 3.687 13 O -0.370 6.370 14 N -0.269 5.269 15 C -0.079 4.079 16 C -0.030 4.030 17 C 0.074 3.926 18 H 0.124 0.876 19 C -0.195 4.195 20 N -0.304 5.304 21 C -0.385 4.385 22 H 0.084 0.916 23 C -0.186 4.186 24 N -0.539 5.539 25 Si 0.730 3.270 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.039 0.961 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.068 2.830 -16.396 17.128 hybrid contribution -1.727 0.403 0.009 1.773 sum 2.341 3.233 -16.387 16.866 Atomic orbital electron populations 1.21742 0.95301 1.01657 1.00453 1.20801 0.93142 0.94040 0.87364 0.95099 1.22514 0.80211 1.00805 0.99693 1.47768 1.06805 1.55963 1.21042 1.16134 0.86130 0.80627 0.82742 1.90741 1.15801 1.59633 1.77420 1.20920 0.99270 1.09074 0.98521 1.22388 0.98575 0.94378 0.89187 1.88115 0.95943 1.62083 1.26413 1.24731 0.98133 1.07434 1.04387 1.19828 0.86657 0.79370 0.82883 1.90799 1.84357 1.37005 1.24803 1.44629 1.09984 1.48785 1.23463 1.22125 0.78968 1.03081 1.03727 1.22614 0.99580 0.95320 0.85508 1.20843 0.82984 0.94834 0.93967 0.87579 1.21957 0.97566 0.99318 1.00652 1.44053 1.01845 1.64436 1.20106 1.19093 0.99695 1.34520 0.85242 0.91611 1.25370 0.96976 0.98496 0.97731 1.69904 1.20600 1.47445 1.15912 0.86271 0.80861 0.77903 0.81998 1.20280 1.21683 1.21643 0.92601 0.91609 0.94290 0.91150 0.91633 0.83501 0.84003 0.83974 0.90538 0.89149 0.89265 0.92440 0.90078 0.90679 0.95381 0.96111 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.04 37.16 0.30 -1.91 16 2 C 0.15 2.87 3.23 -67.49 -0.22 2.66 16 3 H 0.03 0.62 7.40 -51.93 -0.38 0.24 16 4 C 0.09 1.45 5.80 -3.59 -0.02 1.43 16 5 N -0.59 -10.27 2.60 -176.01 -0.46 -10.73 16 6 C 0.55 9.38 7.42 -15.45 -0.11 9.27 16 7 O -0.55 -10.66 13.55 5.01 0.07 -10.59 16 8 C -0.24 -3.21 8.56 -39.42 -0.34 -3.54 16 9 C 0.17 2.09 7.00 -16.00 -0.11 1.98 16 10 S 0.03 0.41 20.66 -107.50 -2.22 -1.81 16 11 C -0.20 -1.70 7.36 36.21 0.27 -1.44 16 12 C 0.53 5.79 7.79 -11.91 -0.09 5.69 16 13 O -0.50 -6.58 16.94 5.58 0.09 -6.49 16 14 N -0.55 -5.85 2.95 -122.27 -0.36 -6.22 16 15 C 0.06 0.52 10.06 59.85 0.60 1.12 16 16 C 0.09 1.83 6.00 -3.36 -0.02 1.81 16 17 C 0.18 4.03 2.32 -67.25 -0.16 3.88 16 18 H 0.11 2.70 6.22 -51.93 -0.32 2.37 16 19 C -0.14 -3.03 8.94 37.15 0.33 -2.69 16 20 N -0.58 -13.15 2.66 -156.76 -0.42 -13.57 16 21 C -0.26 -6.34 8.33 -15.06 -0.13 -6.46 16 22 H 0.07 1.61 6.47 -52.48 -0.34 1.27 16 23 C 0.01 0.36 5.23 -17.43 -0.09 0.27 16 24 N -0.90 -23.97 9.72 55.49 0.54 -23.43 16 25 Si 0.90 20.47 29.55 -169.99 -5.02 15.45 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.05 0.94 7.30 -51.93 -0.38 0.56 16 30 H 0.06 1.21 7.75 -51.93 -0.40 0.81 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.86 5.28 -51.93 -0.27 0.59 16 33 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 34 H 0.15 1.58 4.36 -52.49 -0.23 1.35 16 35 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.70 7.49 -51.93 -0.39 0.31 16 39 H 0.09 0.57 6.61 -51.93 -0.34 0.23 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 42 H 0.07 1.87 6.99 -51.93 -0.36 1.51 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.02 0.44 7.04 -51.93 -0.37 0.07 16 45 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -30.30 361.22 -8.37 -38.67 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.25 Total: 1.22 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 0.21 Total: 12.05 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.70 Total: -53.94 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.16 Total: -17.08 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.22 Total: -1.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.30 -8.37 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898132537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.065 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds