Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.74723 * 2 1 4 4 C 1.53375 * 109.60834 * 239.57617 * 2 1 3 5 5 N 1.46971 * 108.63262 * 190.82917 * 4 2 1 6 6 C 1.34775 * 120.59337 * 235.20006 * 5 4 2 7 7 O 1.21903 * 119.99755 * 184.61001 * 6 5 4 8 8 C 1.40391 * 119.99870 * 4.33550 * 6 5 4 9 9 C 1.36446 * 120.00013 * 174.65534 * 8 6 5 10 10 S 1.77255 * 126.26442 * 0.02562 * 9 8 6 11 11 C 1.82390 * 94.46770 * 179.97438 * 10 9 8 12 12 C 1.51113 * 103.49311 * 359.97438 * 11 10 9 13 13 O 1.21254 * 122.89459 * 180.02562 * 12 11 10 14 14 N 1.32212 * 114.20803 * 359.75568 * 12 11 10 15 15 C 1.46497 * 119.82018 * 180.27769 * 14 12 11 16 16 C 1.46963 * 118.81109 * 55.48397 * 5 4 2 17 17 C 1.53819 * 108.39471 * 304.47587 * 16 5 4 18 18 H 1.09003 * 109.52877 * 169.30087 * 17 16 5 19 19 C 1.52991 * 109.88316 * 289.76856 * 17 16 5 20 20 N 1.46960 * 109.61114 * 120.43197 * 2 1 3 21 21 C 1.36936 * 120.59699 * 354.98978 * 20 2 1 22 22 H 1.08006 * 119.99608 * 38.28194 * 21 20 2 23 23 C 1.38806 * 120.00247 * 218.28774 * 21 20 2 24 24 N 1.31618 * 120.00182 * 0.22238 * 23 21 20 25 25 Si 1.86800 * 120.00054 * 180.22569 * 23 21 20 26 26 H 1.48497 * 109.47179 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47187 * 119.99987 * 25 23 21 28 28 H 1.48500 * 109.47238 * 240.00083 * 25 23 21 29 29 H 1.08999 * 109.47417 * 180.42769 * 1 2 3 30 30 H 1.09006 * 109.46836 * 300.42464 * 1 2 3 31 31 H 1.09001 * 109.47012 * 60.42028 * 1 2 3 32 32 H 1.09003 * 109.61163 * 71.08851 * 4 2 1 33 33 H 1.08999 * 109.61180 * 310.57555 * 4 2 1 34 34 H 1.07999 * 120.00820 * 354.65004 * 8 6 5 35 35 H 1.08990 * 110.61299 * 118.50390 * 11 10 9 36 36 H 1.08999 * 110.61166 * 241.49849 * 11 10 9 37 37 H 1.09000 * 109.47162 * 270.20429 * 15 14 12 38 38 H 1.08994 * 109.47339 * 30.20033 * 15 14 12 39 39 H 1.08997 * 109.47352 * 150.20421 * 15 14 12 40 40 H 1.08998 * 109.61109 * 64.25788 * 16 5 4 41 41 H 1.08999 * 109.60741 * 184.77674 * 16 5 4 42 42 H 1.09006 * 109.46930 * 179.24565 * 19 17 16 43 43 H 1.08998 * 109.47453 * 299.24087 * 19 17 16 44 44 H 1.08996 * 109.47613 * 59.24222 * 19 17 16 45 45 H 0.96998 * 120.00413 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0447 -0.7316 -1.2459 5 7 3.4908 -0.9488 -1.0990 6 6 4.3491 -0.5132 -2.0423 7 8 5.5369 -0.7721 -1.9518 8 6 3.8745 0.2337 -3.1321 9 6 4.7541 0.7673 -4.0284 10 16 6.5199 0.6214 -3.9784 11 6 6.7864 1.6007 -5.4938 12 6 5.3863 1.9725 -5.9241 13 8 5.1555 2.6362 -6.9123 14 7 4.4345 1.5069 -5.1334 15 6 3.0300 1.7893 -5.4396 16 6 3.9836 -1.6550 0.0920 17 6 3.4693 -0.9184 1.3405 18 1 3.6600 -1.5250 2.2259 19 6 4.1796 0.4296 1.4788 20 7 2.0232 -0.7012 1.1936 21 6 1.1511 -1.1446 2.1517 22 1 0.1966 -1.5594 1.8626 23 6 1.4935 -1.0609 3.4942 24 7 2.6547 -0.5513 3.8467 25 14 0.3064 -1.6716 4.8008 26 1 -0.9210 -2.1946 4.1488 27 1 0.9498 -2.7548 5.5869 28 1 -0.0537 -0.5504 5.7054 29 1 -0.3634 -1.0276 0.0077 30 1 -0.3633 0.5205 0.8862 31 1 -0.3633 0.5073 -0.8937 32 1 1.8540 -0.1251 -2.1312 33 1 1.5383 -1.6921 -1.3414 34 1 2.8131 0.3861 -3.2613 35 1 7.3712 2.4941 -5.2755 36 1 7.2755 0.9981 -6.2591 37 1 2.7321 2.7186 -4.9543 38 1 2.9058 1.8866 -6.5180 39 1 2.4072 0.9727 -5.0743 40 1 3.6120 -2.6797 0.0895 41 1 5.0735 -1.6584 0.0903 42 1 3.8007 0.9514 2.3576 43 1 5.2517 0.2660 1.5876 44 1 3.9924 1.0319 0.5898 45 1 2.8942 -0.4931 4.7848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898132537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -9.512593 kcal Electronic energy + Delta-G solvation = -28394.896229 eV Core-core repulsion = 24540.326817 eV Total energy + Delta-G solvation = -3854.569412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19279 -41.19370 -38.98717 -38.04045 -35.58958 -34.31360 -33.36186 -32.51622 -31.94056 -29.68516 -28.28097 -27.63264 -27.11693 -25.54988 -24.65016 -22.46497 -21.40926 -20.92091 -20.11747 -19.20645 -18.28903 -17.85546 -17.78090 -17.56810 -16.85330 -16.83680 -16.18389 -15.92692 -15.66324 -15.38868 -15.16036 -14.97936 -14.93106 -14.62342 -14.28005 -13.86773 -13.56732 -13.47900 -13.43079 -13.34824 -12.84831 -12.80960 -12.73280 -12.59893 -12.33478 -12.25788 -12.25348 -12.19880 -11.93075 -11.70722 -11.59055 -11.50198 -11.25207 -10.51848 -10.39190 -10.02203 -9.65748 -8.78117 -8.29989 -7.74914 -5.33710 -0.34404 0.09937 0.73224 1.18348 1.40674 1.49576 1.53377 1.60766 2.27968 2.40921 2.57132 2.83316 3.40849 3.60149 3.86983 3.99732 4.09557 4.18974 4.24129 4.25171 4.36151 4.37953 4.43367 4.52984 4.69881 4.70656 4.72553 4.79559 4.83959 4.90046 4.92707 5.02564 5.03573 5.19452 5.25383 5.43843 5.51886 5.63035 5.65472 5.79341 5.85097 5.93638 6.32200 6.57404 6.66602 7.28376 7.30740 7.94280 8.51320 9.27649 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.002997 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.322399 B = 9341.154983 C =10048.226249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.147 3.853 3 H 0.018 0.982 4 C 0.101 3.899 5 N -0.593 5.593 6 C 0.549 3.451 7 O -0.583 6.583 8 C -0.256 4.256 9 C 0.188 3.812 10 S -0.013 6.013 11 C -0.176 4.176 12 C 0.524 3.476 13 O -0.517 6.517 14 N -0.545 5.545 15 C 0.055 3.945 16 C 0.108 3.892 17 C 0.183 3.817 18 H 0.069 0.931 19 C -0.117 4.117 20 N -0.597 5.597 21 C -0.250 4.250 22 H 0.071 0.929 23 C -0.039 4.039 24 N -0.923 5.923 25 Si 0.956 3.044 26 H -0.266 1.266 27 H -0.298 1.298 28 H -0.298 1.298 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 3.571 -19.669 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.041 3.959 3 H 0.036 0.964 4 C -0.023 4.023 5 N -0.323 5.323 6 C 0.343 3.657 7 O -0.468 6.468 8 C -0.293 4.293 9 C -0.027 4.027 10 S 0.229 5.771 11 C -0.326 4.326 12 C 0.312 3.688 13 O -0.393 6.393 14 N -0.266 5.266 15 C -0.087 4.087 16 C -0.016 4.016 17 C 0.076 3.924 18 H 0.087 0.913 19 C -0.176 4.176 20 N -0.321 5.321 21 C -0.380 4.380 22 H 0.089 0.911 23 C -0.236 4.236 24 N -0.568 5.568 25 Si 0.786 3.214 26 H -0.190 1.190 27 H -0.225 1.225 28 H -0.225 1.225 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.193 0.807 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.043 0.957 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.927 3.324 -19.356 19.856 hybrid contribution -1.296 0.327 0.764 1.539 sum 1.632 3.651 -18.592 19.017 Atomic orbital electron populations 1.21664 0.93493 1.01723 1.01431 1.21032 0.94696 0.93291 0.86904 0.96414 1.22521 0.78844 1.01425 0.99522 1.47773 1.07791 1.56259 1.20500 1.16598 0.85590 0.80283 0.83207 1.90743 1.17110 1.60679 1.78293 1.20744 1.00693 1.10013 0.97889 1.22365 0.98160 0.93195 0.89004 1.88322 0.96915 1.62934 1.28954 1.24843 0.97391 1.07872 1.02517 1.20139 0.87411 0.78770 0.82435 1.90803 1.84762 1.38060 1.25722 1.44766 1.11246 1.47955 1.22650 1.22397 0.77681 1.04432 1.04217 1.22177 0.98911 0.95038 0.85518 1.20615 0.83543 0.94260 0.93976 0.91272 1.21734 0.97479 0.99200 0.99195 1.44265 1.01580 1.65131 1.21103 1.19352 0.99739 1.33224 0.85702 0.91132 1.25993 0.98249 0.99714 0.99604 1.70077 1.22009 1.49353 1.15350 0.85375 0.79582 0.76727 0.79735 1.18984 1.22526 1.22543 0.92847 0.94104 0.89923 0.86822 0.91093 0.80656 0.81771 0.81454 0.89584 0.88887 0.87238 0.92583 0.90932 0.93766 0.95171 0.95659 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 8.04 71.98 0.58 -3.25 16 2 C 0.15 5.25 3.23 45.03 0.15 5.39 16 3 H 0.02 0.70 7.40 -2.39 -0.02 0.68 16 4 C 0.10 2.85 5.80 86.42 0.50 3.35 16 5 N -0.59 -19.94 2.60 -828.90 -2.15 -22.10 16 6 C 0.55 17.79 7.42 84.77 0.63 18.42 16 7 O -0.58 -22.20 13.55 -5.00 -0.07 -22.26 16 8 C -0.26 -6.07 8.56 22.38 0.19 -5.88 16 9 C 0.19 4.18 7.00 83.51 0.58 4.76 16 10 S -0.01 -0.31 20.66 -56.49 -1.17 -1.47 16 11 C -0.18 -2.53 7.36 71.37 0.53 -2.00 16 12 C 0.52 10.02 7.79 88.18 0.69 10.71 16 13 O -0.52 -12.39 16.94 -2.95 -0.05 -12.44 16 14 N -0.54 -9.98 2.95 -660.58 -1.95 -11.93 16 15 C 0.06 0.69 10.06 127.77 1.29 1.97 16 16 C 0.11 4.27 6.00 86.57 0.52 4.79 16 17 C 0.18 8.40 2.32 45.17 0.10 8.51 16 18 H 0.07 3.69 6.22 -2.39 -0.01 3.68 16 19 C -0.12 -5.37 8.94 71.98 0.64 -4.73 16 20 N -0.60 -27.11 2.66 -649.87 -1.73 -28.84 16 21 C -0.25 -12.44 8.33 84.03 0.70 -11.74 16 22 H 0.07 3.40 6.47 -2.91 -0.02 3.38 16 23 C -0.04 -2.06 5.23 84.86 0.44 -1.62 16 24 N -0.92 -51.40 9.72 21.65 0.21 -51.19 16 25 Si 0.96 42.94 29.55 68.60 2.03 44.97 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 28 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 29 H 0.05 1.65 7.30 -2.39 -0.02 1.63 16 30 H 0.04 1.44 7.75 -2.38 -0.02 1.42 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.11 2.23 5.28 -2.39 -0.01 2.22 16 33 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 34 H 0.18 2.93 4.36 -2.91 -0.01 2.92 16 35 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.17 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.15 7.49 -2.39 -0.02 1.13 16 39 H 0.11 0.92 6.61 -2.39 -0.02 0.90 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.97 6.99 -2.39 -0.02 2.95 16 42 H 0.04 2.28 6.99 -2.38 -0.02 2.26 16 43 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.02 1.09 7.04 -2.39 -0.02 1.07 16 45 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -68.26 361.22 3.68 -64.58 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.02 Total: 11.99 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 7.54 Total: 28.69 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -5.62 Total: -114.06 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.12 Total: -34.70 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.17 Total: -1.47 kcal Total: -68.26 3.68 -64.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898132537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.068 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds