Wall clock time and date at job start Sat Apr 11 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99969 * 2 1 4 4 C 1.50696 * 109.47190 * 180.02562 * 3 2 1 5 5 N 1.30941 * 122.90693 * 270.18881 * 4 3 2 6 6 C 1.29429 * 117.36468 * 180.34534 * 5 4 3 7 7 S 1.70958 * 110.39342 * 359.71521 * 6 5 4 8 8 C 1.35671 * 122.90432 * 90.00162 * 4 3 2 9 9 C 1.46681 * 126.13041 * 359.96104 * 8 4 3 10 10 O 1.21691 * 119.99845 * 359.72122 * 9 8 4 11 11 N 1.34771 * 120.00229 * 179.71421 * 9 8 4 12 12 C 1.46503 * 120.00096 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.45847 * 325.00257 * 12 11 9 14 14 C 1.53033 * 109.44743 * 84.96904 * 12 11 9 15 15 C 1.53191 * 109.31157 * 181.37629 * 14 12 11 16 16 N 1.46926 * 108.77868 * 305.36408 * 15 14 12 17 17 C 1.36935 * 120.63162 * 233.63199 * 16 15 14 18 18 H 1.07995 * 120.00514 * 27.65848 * 17 16 15 19 19 C 1.38815 * 119.99528 * 207.66177 * 17 16 15 20 20 N 1.31617 * 120.00272 * 17.36833 * 19 17 16 21 21 Si 1.86807 * 119.99654 * 197.37374 * 19 17 16 22 22 H 1.48499 * 109.46885 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47467 * 119.99909 * 21 19 17 24 24 H 1.48502 * 109.46704 * 240.00104 * 21 19 17 25 25 C 1.46930 * 118.73567 * 53.60853 * 16 15 14 26 26 C 1.53046 * 109.45571 * 205.03058 * 12 11 9 27 27 H 1.08991 * 109.49815 * 298.60989 * 26 12 11 28 28 C 1.52997 * 109.49772 * 58.68000 * 26 12 11 29 29 H 1.08994 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46535 * 299.99407 * 1 2 3 31 31 H 1.08998 * 109.47487 * 59.99865 * 1 2 3 32 32 H 1.09004 * 109.47024 * 60.00145 * 3 2 1 33 33 H 1.09006 * 109.47274 * 300.00377 * 3 2 1 34 34 H 1.08000 * 124.80852 * 179.68908 * 6 5 4 35 35 H 0.96999 * 119.99737 * 0.02562 * 11 9 8 36 36 H 1.08993 * 109.50191 * 301.33119 * 14 12 11 37 37 H 1.09004 * 109.49733 * 61.42698 * 14 12 11 38 38 H 1.09002 * 109.58470 * 185.57472 * 15 14 12 39 39 H 1.08995 * 109.58401 * 65.15649 * 15 14 12 40 40 H 0.96998 * 119.99469 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.58708 * 186.60806 * 25 16 15 42 42 H 1.09001 * 109.58733 * 66.17582 * 25 16 15 43 43 H 1.09002 * 109.47424 * 59.99909 * 28 26 12 44 44 H 1.09004 * 109.46556 * 179.97438 * 28 26 12 45 45 H 1.08994 * 109.47087 * 299.98968 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2218 1.1265 1.0984 6 6 5.5065 1.0322 0.9729 7 16 5.9431 1.0030 -0.6798 8 6 4.2467 1.1285 -1.1400 9 6 3.7229 1.1695 -2.5095 10 8 2.5243 1.2585 -2.7001 11 7 4.5690 1.1086 -3.5567 12 6 4.0458 1.1489 -4.9245 13 1 3.0890 0.6283 -4.9627 14 6 3.8515 2.6051 -5.3530 15 6 3.2721 2.6431 -6.7706 16 7 4.1449 1.8639 -7.6594 17 6 4.6460 2.4184 -8.8068 18 1 4.7989 3.4857 -8.8688 19 6 4.9573 1.6085 -9.8904 20 7 4.4698 0.3880 -9.9613 21 14 6.0681 2.2510 -11.2479 22 1 6.4800 3.6426 -10.9333 23 1 7.2729 1.3890 -11.3513 24 1 5.3339 2.2324 -12.5386 25 6 4.4704 0.4787 -7.2932 26 6 5.0365 0.4650 -5.8697 27 1 5.9861 0.9995 -5.8501 28 6 5.2551 -0.9812 -5.4210 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.2042 0.9798 1.7957 35 1 5.5244 1.0373 -3.4048 36 1 3.1640 3.0980 -4.6657 37 1 4.8122 3.1198 -5.3388 38 1 3.2242 3.6750 -7.1183 39 1 2.2721 2.2094 -6.7684 40 1 4.6871 -0.1777 -10.7187 41 1 5.2132 0.0826 -7.9855 42 1 3.5681 -0.1315 -7.3335 43 1 4.3053 -1.5157 -5.4418 44 1 5.9603 -1.4679 -6.0947 45 1 5.6552 -0.9906 -4.4071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943483760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:13 Heat of formation + Delta-G solvation = -12.009958 kcal Electronic energy + Delta-G solvation = -27770.236355 eV Core-core repulsion = 23915.558650 eV Total energy + Delta-G solvation = -3854.677705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64904 -39.47127 -37.67071 -37.50934 -34.60264 -32.50774 -31.89422 -31.54293 -29.63390 -28.17251 -26.38545 -25.94920 -25.00938 -24.76055 -22.74387 -21.20722 -20.90697 -19.99227 -19.06944 -18.70578 -17.18140 -16.66581 -16.54736 -16.10731 -15.62003 -15.30561 -15.11571 -14.96588 -14.70059 -14.21363 -13.92927 -13.83551 -13.59814 -13.20417 -13.11248 -12.92213 -12.62378 -12.40946 -12.10415 -11.73323 -11.51469 -11.45106 -11.34135 -11.11183 -10.77238 -10.69656 -10.40731 -10.32893 -10.18928 -10.03609 -10.03221 -9.84208 -9.76672 -9.61925 -9.46921 -9.30913 -8.79687 -8.48862 -6.72053 -5.82252 -3.24087 -0.05578 0.86294 1.23719 2.12150 3.04950 3.14412 3.35109 3.43340 3.45339 3.65217 4.12178 4.46947 4.65378 4.70310 4.86042 5.16492 5.19503 5.28637 5.29383 5.37175 5.42288 5.46528 5.52231 5.60186 5.64679 5.75785 5.83151 6.04658 6.09060 6.18269 6.30247 6.41065 6.45379 6.54014 6.65059 6.75119 6.86039 6.95220 7.01339 7.26012 7.29868 7.50066 7.62793 7.77693 8.16805 8.41429 9.17805 9.80980 10.37659 11.26530 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.002807 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.865019 B = 9970.907575 C =10660.933086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.129 3.871 4 C 0.133 3.867 5 N -0.462 5.462 6 C 0.029 3.971 7 S 0.172 5.828 8 C -0.262 4.262 9 C 0.591 3.409 10 O -0.517 6.517 11 N -0.712 5.712 12 C 0.157 3.843 13 H 0.086 0.914 14 C -0.140 4.140 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.182 3.818 26 C -0.123 4.123 27 H 0.068 0.932 28 C -0.140 4.140 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.207 0.793 35 H 0.393 0.607 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.093 0.907 42 H 0.022 0.978 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -0.012 21.739 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.051 3.949 4 C -0.005 4.005 5 N -0.176 5.176 6 C -0.267 4.267 7 S 0.427 5.573 8 C -0.387 4.387 9 C 0.375 3.625 10 O -0.395 6.395 11 N -0.362 5.362 12 C 0.055 3.945 13 H 0.104 0.896 14 C -0.181 4.181 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.055 3.945 26 C -0.144 4.144 27 H 0.086 0.914 28 C -0.198 4.198 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.224 0.776 35 H 0.227 0.773 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.974 -0.281 21.450 21.542 hybrid contribution 0.175 0.454 -0.400 0.630 sum 2.149 0.174 21.050 21.160 Atomic orbital electron populations 1.22726 0.80411 1.02799 1.00156 1.87883 1.20027 1.26412 1.95514 1.21019 0.85064 0.86272 1.02592 1.20243 0.97234 0.97731 0.85264 1.66023 1.04961 1.15428 1.31178 1.28682 0.95167 1.02417 1.00415 1.84004 1.05426 1.64473 1.03424 1.25804 0.96481 1.16779 0.99623 1.16656 0.86402 0.77228 0.82202 1.90796 1.14303 1.49706 1.84660 1.46245 1.09480 1.73706 1.06752 1.21164 0.98362 0.97183 0.77829 0.89587 1.22407 1.01201 0.95289 0.99174 1.20872 0.92634 0.96174 0.88242 1.44115 1.53880 1.10764 1.22778 1.19226 1.36179 0.92696 0.90088 0.91569 1.25041 1.00534 0.97020 0.97028 1.70035 1.44776 1.08890 1.30896 0.86241 0.80482 0.78306 0.81859 1.20266 1.21560 1.21723 1.20810 0.98662 0.85878 0.89157 1.22189 0.98594 0.94759 0.98824 0.91358 1.21737 1.01639 0.96751 0.99667 0.89600 0.94231 0.93396 0.91954 0.88781 0.77612 0.77310 0.92578 0.92232 0.92478 0.96100 0.93634 0.88889 0.96035 0.92867 0.92444 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.38 10.69 -35.23 -0.38 -5.76 16 3 C 0.13 1.70 5.74 36.00 0.21 1.90 16 4 C 0.13 1.77 6.42 -83.89 -0.54 1.23 16 5 N -0.46 -5.50 10.50 -11.53 -0.12 -5.62 16 6 C 0.03 0.24 12.22 51.75 0.63 0.88 16 7 S 0.17 1.49 22.35 -107.50 -2.40 -0.92 16 8 C -0.26 -3.37 6.48 -37.09 -0.24 -3.61 16 9 C 0.59 8.95 7.74 -12.85 -0.10 8.85 16 10 O -0.52 -9.26 13.93 5.20 0.07 -9.18 16 11 N -0.71 -10.12 4.36 -55.08 -0.24 -10.36 16 12 C 0.16 2.68 1.88 -67.89 -0.13 2.55 16 13 H 0.09 1.65 7.57 -51.93 -0.39 1.25 16 14 C -0.14 -2.49 5.65 -26.62 -0.15 -2.64 16 15 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 16 N -0.59 -14.49 2.99 -172.32 -0.52 -15.01 16 17 C -0.25 -6.77 9.59 -15.06 -0.14 -6.91 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -25.60 11.19 55.49 0.62 -24.98 16 21 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.18 4.14 4.59 -3.71 -0.02 4.12 16 26 C -0.12 -2.18 2.46 -90.50 -0.22 -2.40 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 C -0.14 -2.14 9.03 37.16 0.34 -1.81 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.32 6.01 -51.93 -0.31 1.00 16 34 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.39 4.71 7.49 -40.82 -0.31 4.41 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.09 2.38 6.03 -51.93 -0.31 2.06 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.55 7.36 -51.93 -0.38 0.16 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -32.15 377.38 -8.41 -40.56 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.74 Total: 2.66 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 0.64 Total: 6.69 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.26 Total: -55.97 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.30 Total: -14.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.40 Total: -0.92 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.15 -8.41 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.549 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds