Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99969 * 2 1 4 4 C 1.50696 * 109.47190 * 180.02562 * 3 2 1 5 5 N 1.30941 * 122.90693 * 270.18881 * 4 3 2 6 6 C 1.29429 * 117.36468 * 180.34534 * 5 4 3 7 7 S 1.70958 * 110.39342 * 359.71521 * 6 5 4 8 8 C 1.35671 * 122.90432 * 90.00162 * 4 3 2 9 9 C 1.46681 * 126.13041 * 359.96104 * 8 4 3 10 10 O 1.21691 * 119.99845 * 359.72122 * 9 8 4 11 11 N 1.34771 * 120.00229 * 179.71421 * 9 8 4 12 12 C 1.46503 * 120.00096 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.45847 * 325.00257 * 12 11 9 14 14 C 1.53033 * 109.44743 * 84.96904 * 12 11 9 15 15 C 1.53191 * 109.31157 * 181.37629 * 14 12 11 16 16 N 1.46926 * 108.77868 * 305.36408 * 15 14 12 17 17 C 1.36935 * 120.63162 * 233.63199 * 16 15 14 18 18 H 1.07995 * 120.00514 * 27.65848 * 17 16 15 19 19 C 1.38815 * 119.99528 * 207.66177 * 17 16 15 20 20 N 1.31617 * 120.00272 * 17.36833 * 19 17 16 21 21 Si 1.86807 * 119.99654 * 197.37374 * 19 17 16 22 22 H 1.48499 * 109.46885 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47467 * 119.99909 * 21 19 17 24 24 H 1.48502 * 109.46704 * 240.00104 * 21 19 17 25 25 C 1.46930 * 118.73567 * 53.60853 * 16 15 14 26 26 C 1.53046 * 109.45571 * 205.03058 * 12 11 9 27 27 H 1.08991 * 109.49815 * 298.60989 * 26 12 11 28 28 C 1.52997 * 109.49772 * 58.68000 * 26 12 11 29 29 H 1.08994 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46535 * 299.99407 * 1 2 3 31 31 H 1.08998 * 109.47487 * 59.99865 * 1 2 3 32 32 H 1.09004 * 109.47024 * 60.00145 * 3 2 1 33 33 H 1.09006 * 109.47274 * 300.00377 * 3 2 1 34 34 H 1.08000 * 124.80852 * 179.68908 * 6 5 4 35 35 H 0.96999 * 119.99737 * 0.02562 * 11 9 8 36 36 H 1.08993 * 109.50191 * 301.33119 * 14 12 11 37 37 H 1.09004 * 109.49733 * 61.42698 * 14 12 11 38 38 H 1.09002 * 109.58470 * 185.57472 * 15 14 12 39 39 H 1.08995 * 109.58401 * 65.15649 * 15 14 12 40 40 H 0.96998 * 119.99469 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.58708 * 186.60806 * 25 16 15 42 42 H 1.09001 * 109.58733 * 66.17582 * 25 16 15 43 43 H 1.09002 * 109.47424 * 59.99909 * 28 26 12 44 44 H 1.09004 * 109.46556 * 179.97438 * 28 26 12 45 45 H 1.08994 * 109.47087 * 299.98968 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2218 1.1265 1.0984 6 6 5.5065 1.0322 0.9729 7 16 5.9431 1.0030 -0.6798 8 6 4.2467 1.1285 -1.1400 9 6 3.7229 1.1695 -2.5095 10 8 2.5243 1.2585 -2.7001 11 7 4.5690 1.1086 -3.5567 12 6 4.0458 1.1489 -4.9245 13 1 3.0890 0.6283 -4.9627 14 6 3.8515 2.6051 -5.3530 15 6 3.2721 2.6431 -6.7706 16 7 4.1449 1.8639 -7.6594 17 6 4.6460 2.4184 -8.8068 18 1 4.7989 3.4857 -8.8688 19 6 4.9573 1.6085 -9.8904 20 7 4.4698 0.3880 -9.9613 21 14 6.0681 2.2510 -11.2479 22 1 6.4800 3.6426 -10.9333 23 1 7.2729 1.3890 -11.3513 24 1 5.3339 2.2324 -12.5386 25 6 4.4704 0.4787 -7.2932 26 6 5.0365 0.4650 -5.8697 27 1 5.9861 0.9995 -5.8501 28 6 5.2551 -0.9812 -5.4210 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.2042 0.9798 1.7957 35 1 5.5244 1.0373 -3.4048 36 1 3.1640 3.0980 -4.6657 37 1 4.8122 3.1198 -5.3388 38 1 3.2242 3.6750 -7.1183 39 1 2.2721 2.2094 -6.7684 40 1 4.6871 -0.1777 -10.7187 41 1 5.2132 0.0826 -7.9855 42 1 3.5681 -0.1315 -7.3335 43 1 4.3053 -1.5157 -5.4418 44 1 5.9603 -1.4679 -6.0947 45 1 5.6552 -0.9906 -4.4071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943483760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -34.362317 kcal Electronic energy + Delta-G solvation = -27771.205626 eV Core-core repulsion = 23915.558650 eV Total energy + Delta-G solvation = -3855.646976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64466 -40.63818 -39.07925 -38.53740 -36.20620 -34.09298 -33.52716 -32.53082 -31.26478 -29.22592 -27.57054 -27.31485 -26.63402 -25.58751 -24.27520 -22.57465 -22.40922 -21.33799 -20.29371 -19.64495 -18.79569 -17.92047 -17.58684 -17.31377 -16.81079 -16.54294 -16.30598 -16.13171 -15.83108 -15.55531 -15.42580 -15.16717 -14.88502 -14.66501 -14.56634 -14.25050 -13.93888 -13.56095 -13.35724 -13.17469 -12.94871 -12.88706 -12.56767 -12.54241 -12.45065 -12.32721 -12.03002 -11.85152 -11.77004 -11.58817 -11.36960 -11.20067 -10.84676 -10.68396 -10.56574 -10.56109 -10.13970 -10.01239 -8.71561 -7.87674 -5.32966 -0.88228 0.09895 0.48630 1.26998 1.47668 1.49983 1.60394 1.94826 1.97290 2.51917 2.84202 3.27428 3.31527 3.58738 3.67352 3.76279 3.88900 4.00447 4.08435 4.17768 4.32754 4.35178 4.45772 4.52243 4.55739 4.58453 4.65980 4.70541 4.81062 4.82385 4.89295 4.92709 4.97462 5.06775 5.10458 5.28785 5.32525 5.44475 5.49766 5.65964 5.72787 6.10553 6.34500 6.39178 6.51940 7.03592 7.14370 7.83697 8.36530 9.19345 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.002807 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.865019 B = 9970.907575 C =10660.933086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.405 6.405 3 C 0.128 3.872 4 C 0.127 3.873 5 N -0.492 5.492 6 C 0.045 3.955 7 S 0.239 5.761 8 C -0.302 4.302 9 C 0.592 3.408 10 O -0.553 6.553 11 N -0.702 5.702 12 C 0.170 3.830 13 H 0.061 0.939 14 C -0.126 4.126 15 C 0.145 3.855 16 N -0.610 5.610 17 C -0.263 4.263 18 H 0.068 0.932 19 C -0.048 4.048 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.295 1.295 25 C 0.189 3.811 26 C -0.108 4.108 27 H 0.076 0.924 28 C -0.134 4.134 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.252 0.748 35 H 0.407 0.593 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.008 0.992 40 H 0.250 0.750 41 H 0.064 0.936 42 H -0.008 1.008 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 0.458 24.051 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.324 6.324 3 C 0.049 3.951 4 C -0.013 4.013 5 N -0.206 5.206 6 C -0.249 4.249 7 S 0.495 5.505 8 C -0.427 4.427 9 C 0.378 3.622 10 O -0.433 6.433 11 N -0.352 5.352 12 C 0.066 3.934 13 H 0.080 0.920 14 C -0.166 4.166 15 C 0.019 3.981 16 N -0.333 5.333 17 C -0.393 4.393 18 H 0.086 0.914 19 C -0.244 4.244 20 N -0.580 5.580 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.214 1.214 24 H -0.222 1.222 25 C 0.063 3.937 26 C -0.129 4.129 27 H 0.095 0.905 28 C -0.192 4.192 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.268 0.732 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.026 0.974 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.010 0.990 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.477 0.201 23.796 24.214 hybrid contribution -0.608 0.314 -1.039 1.244 sum 3.869 0.515 22.757 23.089 Atomic orbital electron populations 1.22895 0.78962 1.03862 1.00803 1.87834 1.21803 1.27170 1.95635 1.21002 0.85817 0.85931 1.02345 1.20336 0.97387 0.97581 0.85996 1.66076 1.06382 1.17465 1.30701 1.29515 0.94709 0.98861 1.01859 1.83732 1.01254 1.62851 1.02637 1.25576 0.99648 1.19411 0.98027 1.16941 0.85923 0.76184 0.83161 1.90780 1.15934 1.51124 1.85447 1.45919 1.10158 1.73797 1.05335 1.20750 0.97148 0.96190 0.79296 0.92033 1.22205 1.01447 0.96049 0.96871 1.20958 0.91804 0.95649 0.89711 1.44380 1.54642 1.11375 1.22888 1.19543 1.35823 0.92959 0.90956 0.91440 1.25789 1.01967 0.97334 0.99302 1.70192 1.46159 1.10080 1.31540 0.85216 0.78402 0.78170 0.78685 1.19075 1.21402 1.22227 1.20595 0.96677 0.84736 0.91672 1.21922 0.98466 0.96817 0.95694 0.90518 1.21690 1.01445 0.94653 1.01385 0.88384 0.92203 0.94094 0.90644 0.90466 0.73246 0.75636 0.91874 0.91320 0.92252 0.97442 0.94037 0.91764 0.98977 0.93837 0.92167 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -11.54 10.69 -148.98 -1.59 -13.13 16 3 C 0.13 3.36 5.74 71.23 0.41 3.77 16 4 C 0.13 3.22 6.42 42.10 0.27 3.49 16 5 N -0.49 -10.53 10.50 -190.40 -2.00 -12.53 16 6 C 0.04 0.57 12.22 130.60 1.60 2.17 16 7 S 0.24 3.25 22.35 -56.49 -1.26 1.99 16 8 C -0.30 -7.29 6.48 23.88 0.15 -7.14 16 9 C 0.59 17.54 7.74 86.45 0.67 18.21 16 10 O -0.55 -20.22 13.93 -4.32 -0.06 -20.28 16 11 N -0.70 -18.91 4.36 -446.38 -1.95 -20.86 16 12 C 0.17 5.74 1.88 45.02 0.08 5.83 16 13 H 0.06 2.42 7.57 -2.39 -0.02 2.40 16 14 C -0.13 -4.41 5.65 30.67 0.17 -4.24 16 15 C 0.14 6.21 6.52 86.36 0.56 6.77 16 16 N -0.61 -30.45 2.99 -699.09 -2.09 -32.55 16 17 C -0.26 -14.27 9.59 84.03 0.81 -13.46 16 18 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 19 C -0.05 -2.66 4.91 84.86 0.42 -2.25 16 20 N -0.93 -54.54 11.19 21.65 0.24 -54.30 16 21 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.19 8.93 4.59 86.36 0.40 9.32 16 26 C -0.11 -3.80 2.46 -10.71 -0.03 -3.83 16 27 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 28 C -0.13 -3.95 9.03 71.98 0.65 -3.30 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.08 2.25 6.01 -2.38 -0.01 2.24 16 34 H 0.25 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.41 8.62 7.49 -92.71 -0.69 7.93 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.06 2.46 7.93 -2.39 -0.02 2.45 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.06 3.40 6.03 -2.39 -0.01 3.38 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.07 1.69 7.36 -2.39 -0.02 1.68 16 Total: -1.00 -72.49 377.38 1.04 -71.45 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.31 Total: 16.87 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 7.41 Total: 17.24 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -5.80 Total: -120.24 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.65 Total: -33.41 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.26 Total: 1.99 kcal Total: -72.49 1.04 -71.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.084 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds