Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00148 * 2 1 4 4 C 1.50703 * 109.47139 * 179.97438 * 3 2 1 5 5 N 1.30939 * 122.90328 * 269.96322 * 4 3 2 6 6 C 1.29434 * 117.36143 * 180.02562 * 5 4 3 7 7 S 1.70951 * 110.38872 * 359.72393 * 6 5 4 8 8 C 1.35660 * 122.90020 * 89.99955 * 4 3 2 9 9 C 1.46685 * 126.13401 * 359.96770 * 8 4 3 10 10 O 1.21689 * 119.99864 * 359.97438 * 9 8 4 11 11 N 1.34773 * 120.00237 * 179.97438 * 9 8 4 12 12 C 1.46492 * 120.00231 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.45268 * 35.02571 * 12 11 9 14 14 C 1.53047 * 109.45786 * 275.06604 * 12 11 9 15 15 C 1.52760 * 109.38266 * 301.21717 * 14 12 11 16 16 N 1.46929 * 109.00960 * 305.59022 * 15 14 12 17 17 C 1.36938 * 120.63068 * 233.58060 * 16 15 14 18 18 H 1.08000 * 119.99931 * 152.30316 * 17 16 15 19 19 C 1.38817 * 119.99746 * 332.30577 * 17 16 15 20 20 N 1.31612 * 120.00092 * 342.50375 * 19 17 16 21 21 Si 1.86798 * 119.99583 * 162.77719 * 19 17 16 22 22 H 1.48500 * 109.47109 * 60.00223 * 21 19 17 23 23 H 1.48508 * 109.46991 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47656 * 299.99742 * 21 19 17 25 25 C 1.46929 * 118.73866 * 53.30862 * 16 15 14 26 26 C 1.53039 * 109.46351 * 154.99826 * 12 11 9 27 27 H 1.09006 * 109.50021 * 178.60099 * 26 12 11 28 28 C 1.52996 * 109.49629 * 298.70028 * 26 12 11 29 29 H 1.08991 * 109.47308 * 300.00311 * 1 2 3 30 30 H 1.09002 * 109.46634 * 60.00425 * 1 2 3 31 31 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46688 * 60.00131 * 3 2 1 33 33 H 1.08997 * 109.46753 * 299.99828 * 3 2 1 34 34 H 1.07995 * 124.80175 * 179.97438 * 6 5 4 35 35 H 0.97004 * 119.99462 * 359.97438 * 11 9 8 36 36 H 1.08994 * 109.49959 * 61.29626 * 14 12 11 37 37 H 1.09001 * 109.49807 * 181.36072 * 14 12 11 38 38 H 1.08999 * 109.51393 * 185.70211 * 15 14 12 39 39 H 1.09003 * 109.43370 * 65.42441 * 15 14 12 40 40 H 0.97003 * 120.00017 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.58437 * 66.43102 * 25 16 15 42 42 H 1.08997 * 109.58308 * 186.71283 * 25 16 15 43 43 H 1.09005 * 109.47218 * 179.83670 * 28 26 12 44 44 H 1.08993 * 109.47324 * 299.83576 * 28 26 12 45 45 H 1.09004 * 109.47251 * 59.84253 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2213 1.1312 1.1003 6 6 5.5056 1.0298 0.9758 7 16 5.9423 0.9867 -0.6764 8 6 4.2476 1.1280 -1.1381 9 6 3.7249 1.1686 -2.5080 10 8 2.5269 1.2623 -2.6996 11 7 4.5715 1.1019 -3.5546 12 6 4.0495 1.1430 -4.9227 13 1 3.1828 1.8028 -4.9610 14 6 3.6364 -0.2664 -5.3533 15 6 4.8450 -1.1969 -5.2691 16 7 5.9460 -0.6237 -6.0553 17 6 6.5683 -1.3621 -7.0262 18 1 7.0265 -0.8679 -7.8701 19 6 6.6101 -2.7460 -6.9257 20 7 6.3736 -3.3293 -5.7698 21 14 7.0097 -3.7799 -8.4293 22 1 8.3572 -3.4162 -8.9363 23 1 6.9920 -5.2182 -8.0599 24 1 5.9981 -3.5276 -9.4867 25 6 6.3626 0.7590 -5.7842 26 6 5.1332 1.6694 -5.8664 27 1 4.7537 1.6768 -6.8882 28 6 5.5220 3.0908 -5.4551 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 6.2023 0.9757 1.7992 35 1 5.5265 1.0275 -3.4018 36 1 2.8481 -0.6315 -4.6951 37 1 3.2705 -0.2407 -6.3797 38 1 4.5801 -2.1751 -5.6704 39 1 5.1532 -1.2979 -4.2285 40 1 6.4032 -4.2963 -5.6995 41 1 6.7969 0.8207 -4.7864 42 1 7.1003 1.0700 -6.5238 43 1 6.2959 3.4643 -6.1257 44 1 4.6471 3.7382 -5.5137 45 1 5.9001 3.0827 -4.4327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943483761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -9.221155 kcal Electronic energy + Delta-G solvation = -28335.379912 eV Core-core repulsion = 24480.823138 eV Total energy + Delta-G solvation = -3854.556774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52339 -39.50410 -37.61874 -37.43058 -34.31460 -32.65572 -31.55680 -31.11205 -30.11756 -28.09646 -26.28395 -25.85829 -25.18914 -24.61976 -22.59201 -21.58655 -21.10587 -19.52611 -18.90333 -18.42268 -17.06809 -16.59917 -16.51533 -15.84992 -15.46189 -15.18091 -15.00683 -14.83255 -14.53334 -14.17189 -14.06998 -13.77214 -13.67318 -13.33792 -12.99449 -12.94329 -12.59568 -12.34492 -12.16140 -11.58698 -11.53383 -11.41535 -11.31812 -11.09900 -10.85486 -10.70778 -10.39849 -10.26092 -10.15468 -10.08605 -9.84561 -9.77368 -9.65186 -9.47524 -9.43504 -9.13769 -8.67365 -8.47984 -6.71775 -5.81562 -3.24627 0.12166 1.05947 1.43885 2.27893 3.16493 3.34292 3.36750 3.43273 3.44017 3.80572 4.26038 4.46585 4.81206 4.85283 4.98838 5.16287 5.25742 5.27084 5.32957 5.37641 5.45161 5.46225 5.56770 5.59005 5.68107 5.82653 5.90460 5.92541 6.03592 6.10819 6.22986 6.28992 6.39937 6.59395 6.62586 6.71184 6.84831 6.91615 7.13084 7.34012 7.42647 7.64437 7.68382 7.76686 8.30903 8.40936 9.17325 9.80704 10.36436 11.26495 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003465 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.791261 B = 8078.577146 C = 8221.796074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.378 6.378 3 C 0.131 3.869 4 C 0.131 3.869 5 N -0.464 5.464 6 C 0.024 3.976 7 S 0.185 5.815 8 C -0.263 4.263 9 C 0.594 3.406 10 O -0.525 6.525 11 N -0.702 5.702 12 C 0.161 3.839 13 H 0.077 0.923 14 C -0.155 4.155 15 C 0.174 3.826 16 N -0.590 5.590 17 C -0.257 4.257 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.152 3.848 26 C -0.120 4.120 27 H 0.084 0.916 28 C -0.142 4.142 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.207 0.793 35 H 0.399 0.601 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.017 0.983 40 H 0.255 0.745 41 H 0.011 0.989 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 12.323 11.309 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.296 6.296 3 C 0.052 3.948 4 C -0.008 4.008 5 N -0.178 5.178 6 C -0.271 4.271 7 S 0.441 5.559 8 C -0.388 4.388 9 C 0.378 3.622 10 O -0.404 6.404 11 N -0.353 5.353 12 C 0.058 3.942 13 H 0.095 0.905 14 C -0.195 4.195 15 C 0.048 3.952 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.544 5.544 21 Si 0.731 3.269 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.025 3.975 26 C -0.141 4.141 27 H 0.103 0.897 28 C -0.200 4.200 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.223 0.777 35 H 0.235 0.765 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.936 11.940 11.209 16.843 hybrid contribution -0.223 -0.510 -0.435 0.706 sum -4.159 11.430 10.774 16.249 Atomic orbital electron populations 1.22709 0.80610 1.02770 0.99934 1.87918 1.19846 1.26417 1.95461 1.20991 0.85214 0.86233 1.02331 1.20194 0.97119 0.98153 0.85295 1.66021 1.04990 1.15628 1.31143 1.28669 0.95216 1.02547 1.00688 1.84202 1.05250 1.63541 1.02900 1.25761 0.96745 1.16696 0.99551 1.16606 0.86259 0.77030 0.82280 1.90756 1.14328 1.50516 1.84793 1.46035 1.10034 1.73034 1.06188 1.20971 0.96165 0.97998 0.79093 0.90532 1.22506 1.00626 0.95655 1.00696 1.20637 0.84473 0.95997 0.94105 1.44047 1.36252 1.09096 1.41886 1.19120 1.32111 0.88530 0.98885 0.91693 1.25016 1.00469 0.97516 0.96356 1.70026 1.52982 1.09278 1.22091 0.86389 0.78325 0.79370 0.82771 1.20902 1.21648 1.21014 1.20903 0.92972 0.85993 0.97657 1.21973 0.98068 0.94772 0.99279 0.89721 1.21772 1.00958 0.96286 1.00995 0.94331 0.93581 0.89620 0.92118 0.88927 0.77667 0.76504 0.92476 0.91601 0.89508 0.96510 0.93539 0.97118 0.92335 0.92590 0.93178 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -5.91 10.69 -35.23 -0.38 -6.28 16 3 C 0.13 1.87 5.74 36.01 0.21 2.08 16 4 C 0.13 1.96 6.42 -83.89 -0.54 1.42 16 5 N -0.46 -6.34 10.50 -11.53 -0.12 -6.46 16 6 C 0.02 0.25 12.22 51.75 0.63 0.89 16 7 S 0.19 2.13 22.35 -107.50 -2.40 -0.27 16 8 C -0.26 -3.93 6.48 -37.10 -0.24 -4.17 16 9 C 0.59 9.96 7.74 -12.85 -0.10 9.86 16 10 O -0.53 -9.80 13.93 5.20 0.07 -9.73 16 11 N -0.70 -11.35 3.60 -55.08 -0.20 -11.54 16 12 C 0.16 2.72 2.21 -67.89 -0.15 2.57 16 13 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 14 C -0.15 -3.04 5.75 -26.83 -0.15 -3.20 16 15 C 0.17 4.07 5.03 -3.93 -0.02 4.05 16 16 N -0.59 -14.04 3.00 -172.58 -0.52 -14.55 16 17 C -0.26 -6.81 9.59 -15.06 -0.14 -6.96 16 18 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 19 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 20 N -0.90 -25.69 11.20 55.49 0.62 -25.07 16 21 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.15 2.90 5.51 -3.71 -0.02 2.88 16 26 C -0.12 -1.91 2.67 -90.50 -0.24 -2.15 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 28 C -0.14 -1.81 9.05 37.16 0.34 -1.48 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.36 6.01 -51.93 -0.31 1.05 16 34 H 0.21 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.40 6.23 5.91 -40.82 -0.24 5.99 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 39 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.01 0.21 6.64 -51.93 -0.34 -0.14 16 42 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.61 7.53 -51.93 -0.39 0.22 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -31.93 373.42 -8.32 -40.25 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.59 Total: 4.33 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 0.59 Total: 7.38 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.22 Total: -57.62 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.30 Total: -16.01 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.40 Total: -0.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.93 -8.32 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.031 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds