Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00148 * 2 1 4 4 C 1.50703 * 109.47139 * 179.97438 * 3 2 1 5 5 N 1.30939 * 122.90328 * 269.96322 * 4 3 2 6 6 C 1.29434 * 117.36143 * 180.02562 * 5 4 3 7 7 S 1.70951 * 110.38872 * 359.72393 * 6 5 4 8 8 C 1.35660 * 122.90020 * 89.99955 * 4 3 2 9 9 C 1.46685 * 126.13401 * 359.96770 * 8 4 3 10 10 O 1.21689 * 119.99864 * 359.97438 * 9 8 4 11 11 N 1.34773 * 120.00237 * 179.97438 * 9 8 4 12 12 C 1.46492 * 120.00231 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.45268 * 35.02571 * 12 11 9 14 14 C 1.53047 * 109.45786 * 275.06604 * 12 11 9 15 15 C 1.52760 * 109.38266 * 301.21717 * 14 12 11 16 16 N 1.46929 * 109.00960 * 305.59022 * 15 14 12 17 17 C 1.36938 * 120.63068 * 233.58060 * 16 15 14 18 18 H 1.08000 * 119.99931 * 152.30316 * 17 16 15 19 19 C 1.38817 * 119.99746 * 332.30577 * 17 16 15 20 20 N 1.31612 * 120.00092 * 342.50375 * 19 17 16 21 21 Si 1.86798 * 119.99583 * 162.77719 * 19 17 16 22 22 H 1.48500 * 109.47109 * 60.00223 * 21 19 17 23 23 H 1.48508 * 109.46991 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47656 * 299.99742 * 21 19 17 25 25 C 1.46929 * 118.73866 * 53.30862 * 16 15 14 26 26 C 1.53039 * 109.46351 * 154.99826 * 12 11 9 27 27 H 1.09006 * 109.50021 * 178.60099 * 26 12 11 28 28 C 1.52996 * 109.49629 * 298.70028 * 26 12 11 29 29 H 1.08991 * 109.47308 * 300.00311 * 1 2 3 30 30 H 1.09002 * 109.46634 * 60.00425 * 1 2 3 31 31 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46688 * 60.00131 * 3 2 1 33 33 H 1.08997 * 109.46753 * 299.99828 * 3 2 1 34 34 H 1.07995 * 124.80175 * 179.97438 * 6 5 4 35 35 H 0.97004 * 119.99462 * 359.97438 * 11 9 8 36 36 H 1.08994 * 109.49959 * 61.29626 * 14 12 11 37 37 H 1.09001 * 109.49807 * 181.36072 * 14 12 11 38 38 H 1.08999 * 109.51393 * 185.70211 * 15 14 12 39 39 H 1.09003 * 109.43370 * 65.42441 * 15 14 12 40 40 H 0.97003 * 120.00017 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.58437 * 66.43102 * 25 16 15 42 42 H 1.08997 * 109.58308 * 186.71283 * 25 16 15 43 43 H 1.09005 * 109.47218 * 179.83670 * 28 26 12 44 44 H 1.08993 * 109.47324 * 299.83576 * 28 26 12 45 45 H 1.09004 * 109.47251 * 59.84253 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2213 1.1312 1.1003 6 6 5.5056 1.0298 0.9758 7 16 5.9423 0.9867 -0.6764 8 6 4.2476 1.1280 -1.1381 9 6 3.7249 1.1686 -2.5080 10 8 2.5269 1.2623 -2.6996 11 7 4.5715 1.1019 -3.5546 12 6 4.0495 1.1430 -4.9227 13 1 3.1828 1.8028 -4.9610 14 6 3.6364 -0.2664 -5.3533 15 6 4.8450 -1.1969 -5.2691 16 7 5.9460 -0.6237 -6.0553 17 6 6.5683 -1.3621 -7.0262 18 1 7.0265 -0.8679 -7.8701 19 6 6.6101 -2.7460 -6.9257 20 7 6.3736 -3.3293 -5.7698 21 14 7.0097 -3.7799 -8.4293 22 1 8.3572 -3.4162 -8.9363 23 1 6.9920 -5.2182 -8.0599 24 1 5.9981 -3.5276 -9.4867 25 6 6.3626 0.7590 -5.7842 26 6 5.1332 1.6694 -5.8664 27 1 4.7537 1.6768 -6.8882 28 6 5.5220 3.0908 -5.4551 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 6.2023 0.9757 1.7992 35 1 5.5265 1.0275 -3.4018 36 1 2.8481 -0.6315 -4.6951 37 1 3.2705 -0.2407 -6.3797 38 1 4.5801 -2.1751 -5.6704 39 1 5.1532 -1.2979 -4.2285 40 1 6.4032 -4.2963 -5.6995 41 1 6.7969 0.8207 -4.7864 42 1 7.1003 1.0700 -6.5238 43 1 6.2959 3.4643 -6.1257 44 1 4.6471 3.7382 -5.5137 45 1 5.9001 3.0827 -4.4327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943483761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = -30.807321 kcal Electronic energy + Delta-G solvation = -28336.315958 eV Core-core repulsion = 24480.823138 eV Total energy + Delta-G solvation = -3855.492820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68506 -40.75121 -39.02931 -38.53204 -36.02325 -34.09101 -32.94366 -32.59518 -31.70332 -29.20485 -27.40560 -27.30837 -26.79550 -25.59057 -24.11288 -23.09199 -22.60604 -20.69844 -20.22611 -19.60807 -18.71009 -17.96367 -17.60019 -17.08047 -16.81401 -16.52279 -16.37378 -16.07348 -15.73666 -15.63841 -15.54211 -15.13260 -14.98934 -14.71405 -14.51133 -14.23095 -13.93870 -13.56916 -13.30925 -13.16666 -12.95612 -12.70268 -12.53992 -12.53001 -12.37899 -12.30370 -12.22043 -11.96557 -11.67922 -11.50550 -11.33009 -11.12614 -10.86481 -10.68457 -10.56084 -10.51574 -10.15142 -10.00288 -8.67136 -7.86087 -5.30902 -0.88357 0.09649 0.49303 1.25955 1.47527 1.50458 1.56363 1.92283 2.09614 2.52153 2.85384 3.29142 3.31348 3.61507 3.69125 3.78681 3.90376 4.04641 4.06696 4.12019 4.34854 4.39844 4.46706 4.52135 4.58560 4.59628 4.64671 4.75755 4.79843 4.81313 4.89652 4.97699 5.01308 5.08353 5.15805 5.30257 5.41504 5.46643 5.53972 5.65206 5.72844 6.13334 6.34173 6.39003 6.49807 7.02780 7.15093 7.86662 8.37902 9.19726 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003465 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.791261 B = 8078.577146 C = 8221.796074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.409 6.409 3 C 0.130 3.870 4 C 0.126 3.874 5 N -0.489 5.489 6 C 0.047 3.953 7 S 0.216 5.784 8 C -0.301 4.301 9 C 0.593 3.407 10 O -0.551 6.551 11 N -0.699 5.699 12 C 0.168 3.832 13 H 0.085 0.915 14 C -0.143 4.143 15 C 0.188 3.812 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.070 0.930 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.962 3.038 22 H -0.273 1.273 23 H -0.298 1.298 24 H -0.280 1.280 25 C 0.149 3.851 26 C -0.107 4.107 27 H 0.083 0.917 28 C -0.134 4.134 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.252 0.748 35 H 0.401 0.599 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.047 0.953 39 H -0.004 1.004 40 H 0.248 0.752 41 H 0.019 0.981 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 14.069 11.887 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.328 6.328 3 C 0.052 3.948 4 C -0.013 4.013 5 N -0.203 5.203 6 C -0.248 4.248 7 S 0.473 5.527 8 C -0.426 4.426 9 C 0.379 3.621 10 O -0.432 6.432 11 N -0.350 5.350 12 C 0.064 3.936 13 H 0.103 0.897 14 C -0.184 4.184 15 C 0.062 3.938 16 N -0.329 5.329 17 C -0.392 4.392 18 H 0.088 0.912 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.791 3.209 22 H -0.199 1.199 23 H -0.225 1.225 24 H -0.207 1.207 25 C 0.023 3.977 26 C -0.128 4.128 27 H 0.101 0.899 28 C -0.192 4.192 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.268 0.732 35 H 0.238 0.762 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.014 0.986 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.946 13.729 11.778 18.327 hybrid contribution -0.485 -1.040 -0.531 1.264 sum -3.431 12.689 11.247 17.299 Atomic orbital electron populations 1.22895 0.78852 1.03764 1.00960 1.87862 1.21966 1.27364 1.95652 1.21012 0.85349 0.85866 1.02601 1.20399 0.97602 0.97556 0.85763 1.66085 1.06171 1.17413 1.30619 1.29496 0.94874 0.98913 1.01485 1.84070 1.02545 1.62868 1.03243 1.25624 0.99079 1.19285 0.98573 1.16864 0.85952 0.76222 0.83079 1.90731 1.15373 1.51653 1.85426 1.45950 1.10100 1.73083 1.05835 1.20865 0.97013 0.95965 0.79795 0.89679 1.22327 0.98533 0.96862 1.00636 1.20294 0.85913 0.95146 0.92447 1.44241 1.36407 1.10683 1.41567 1.19482 1.31127 0.89051 0.99549 0.91189 1.25724 1.01295 0.98700 0.98588 1.70181 1.54912 1.08847 1.23942 0.85419 0.78422 0.77304 0.79762 1.19883 1.22453 1.20669 1.21094 0.94584 0.83955 0.98050 1.21828 0.95911 0.96048 0.99003 0.89882 1.21707 1.02039 0.93829 1.01609 0.92028 0.93771 0.88715 0.90350 0.90012 0.73194 0.76186 0.93474 0.91564 0.93489 0.98588 0.94308 0.96348 0.91930 0.91054 0.91852 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -12.88 10.69 -148.98 -1.59 -14.47 16 3 C 0.13 3.71 5.74 71.24 0.41 4.12 16 4 C 0.13 3.70 6.42 42.10 0.27 3.97 16 5 N -0.49 -12.49 10.50 -190.40 -2.00 -14.49 16 6 C 0.05 0.85 12.22 130.60 1.60 2.45 16 7 S 0.22 4.57 22.35 -56.49 -1.26 3.31 16 8 C -0.30 -8.85 6.48 23.88 0.15 -8.70 16 9 C 0.59 19.92 7.74 86.45 0.67 20.59 16 10 O -0.55 -20.91 13.93 -4.31 -0.06 -20.97 16 11 N -0.70 -22.27 3.60 -446.39 -1.61 -23.88 16 12 C 0.17 5.54 2.21 45.02 0.10 5.64 16 13 H 0.09 2.74 7.58 -2.39 -0.02 2.72 16 14 C -0.14 -5.74 5.75 30.53 0.18 -5.57 16 15 C 0.19 9.10 5.03 86.22 0.43 9.53 16 16 N -0.61 -28.95 3.00 -699.91 -2.10 -31.05 16 17 C -0.26 -13.92 9.59 84.03 0.81 -13.11 16 18 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 19 C -0.05 -2.61 4.91 84.86 0.42 -2.19 16 20 N -0.93 -54.84 11.20 21.65 0.24 -54.60 16 21 Si 0.96 44.37 29.59 68.60 2.03 46.40 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 C 0.15 5.50 5.51 86.36 0.48 5.98 16 26 C -0.11 -3.23 2.67 -10.72 -0.03 -3.26 16 27 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 28 C -0.13 -3.01 9.05 71.98 0.65 -2.36 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 2.46 6.01 -2.39 -0.01 2.45 16 34 H 0.25 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.40 12.23 5.91 -92.71 -0.55 11.68 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.05 2.64 6.04 -2.39 -0.01 2.63 16 39 H 0.00 -0.20 7.74 -2.39 -0.02 -0.22 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.02 0.67 6.64 -2.39 -0.02 0.65 16 42 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 43 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.05 1.19 7.53 -2.38 -0.02 1.18 16 Total: -1.00 -70.92 373.42 1.49 -69.42 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.46 Total: 21.28 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 7.38 Total: 19.04 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -5.46 Total: -124.01 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.65 Total: -35.44 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.26 Total: 3.31 kcal Total: -70.92 1.49 -69.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943483761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.617 kcal (2) G-P(sol) polarization free energy of solvation -70.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds