Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42900 * 113.99786 * 2 1 4 4 C 1.50701 * 109.46517 * 179.97438 * 3 2 1 5 5 N 1.28647 * 124.71914 * 90.00115 * 4 3 2 6 6 C 1.33567 * 115.76764 * 180.02562 * 5 4 3 7 7 C 1.47264 * 123.14559 * 179.97438 * 6 5 4 8 8 O 1.21622 * 120.00427 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99751 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00202 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.45476 * 35.02528 * 10 9 7 12 12 C 1.53041 * 109.45590 * 275.06968 * 10 9 7 13 13 C 1.52759 * 109.38448 * 301.21486 * 12 10 9 14 14 N 1.46931 * 109.00997 * 305.59177 * 13 12 10 15 15 C 1.36936 * 120.62927 * 233.58601 * 14 13 12 16 16 H 1.08002 * 120.00172 * 153.10341 * 15 14 13 17 17 C 1.38812 * 120.00088 * 333.10162 * 15 14 13 18 18 N 1.31611 * 120.00091 * 158.91661 * 17 15 14 19 19 Si 1.86798 * 119.99879 * 339.18673 * 17 15 14 20 20 H 1.48497 * 109.47270 * 95.07383 * 19 17 15 21 21 H 1.48502 * 109.47210 * 215.07047 * 19 17 15 22 22 H 1.48506 * 109.47531 * 335.07041 * 19 17 15 23 23 C 1.46922 * 118.73721 * 53.30446 * 14 13 12 24 24 C 1.53039 * 109.46164 * 155.00030 * 10 9 7 25 25 H 1.09003 * 109.49537 * 178.60580 * 24 10 9 26 26 C 1.53001 * 109.49758 * 298.70399 * 24 10 9 27 27 C 1.35204 * 113.71134 * 0.26947 * 6 5 4 28 28 S 1.70770 * 124.71963 * 270.03444 * 4 3 2 29 29 H 1.09005 * 109.46599 * 60.00331 * 1 2 3 30 30 H 1.08997 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47187 * 300.00569 * 1 2 3 32 32 H 1.08994 * 109.47420 * 59.99445 * 3 2 1 33 33 H 1.09001 * 109.47116 * 299.99375 * 3 2 1 34 34 H 0.97003 * 120.00095 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.50030 * 61.29826 * 12 10 9 36 36 H 1.09004 * 109.49320 * 181.35523 * 12 10 9 37 37 H 1.08999 * 109.51124 * 185.70870 * 13 12 10 38 38 H 1.08996 * 109.43310 * 65.42539 * 13 12 10 39 39 H 0.97001 * 120.00195 * 180.02562 * 18 17 15 40 40 H 1.09009 * 109.58554 * 66.43557 * 23 14 13 41 41 H 1.08996 * 109.58909 * 186.71570 * 23 14 13 42 42 H 1.08999 * 109.46678 * 179.84163 * 26 24 10 43 43 H 1.09005 * 109.46593 * 299.83899 * 26 24 10 44 44 H 1.08998 * 109.47304 * 59.83805 * 26 24 10 45 45 H 1.08000 * 125.58379 * 179.73301 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2434 1.1283 -1.0565 6 6 5.5586 1.0235 -0.8481 7 6 6.5431 0.9447 -1.9404 8 8 7.7285 0.8498 -1.6851 9 7 6.1306 0.9777 -3.2231 10 6 7.1099 0.8987 -4.3098 11 1 7.9276 0.2412 -4.0145 12 6 7.6603 2.2964 -4.6026 13 6 6.5091 3.2246 -4.9858 14 7 5.7610 2.6247 -6.0991 15 6 5.5354 3.3323 -7.2496 16 1 5.3955 2.8115 -8.1853 17 6 5.4866 4.7191 -7.2132 18 7 5.6866 5.4137 -8.3131 19 14 5.1446 5.5996 -5.6017 20 1 6.4300 5.9832 -4.9647 21 1 4.3395 6.8193 -5.8651 22 1 4.3924 4.6965 -4.6939 23 6 5.2651 1.2491 -5.9570 24 6 6.4349 0.3411 -5.5649 25 1 7.1569 0.3053 -6.3808 26 6 5.9139 -1.0692 -5.2808 27 6 5.9009 0.9903 0.4595 28 16 4.4815 1.1089 1.4047 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 5.1853 1.0538 -3.4267 35 1 8.1614 2.6834 -3.7153 36 1 8.3712 2.2420 -5.4271 37 1 6.9078 4.1916 -5.2925 38 1 5.8477 3.3547 -4.1294 39 1 5.6528 6.3828 -8.2876 40 1 4.5000 1.2148 -5.1812 41 1 4.8409 0.9139 -6.9034 42 1 5.4308 -1.4648 -6.1742 43 1 6.7468 -1.7148 -5.0020 44 1 5.1932 -1.0326 -4.4639 45 1 6.9066 0.9050 0.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945642652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -8.730325 kcal Electronic energy + Delta-G solvation = -28059.215295 eV Core-core repulsion = 24204.679805 eV Total energy + Delta-G solvation = -3854.535490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70148 -39.38861 -38.18752 -37.54813 -34.41715 -32.58880 -31.89240 -31.52677 -30.31266 -28.48351 -26.59339 -26.30480 -25.66719 -24.53067 -22.18715 -21.52976 -21.45459 -20.03312 -19.05206 -18.75308 -16.97793 -16.94279 -16.45404 -16.27931 -16.03442 -15.57379 -15.23808 -15.00599 -14.52626 -14.35073 -14.04772 -13.87068 -13.54087 -13.42865 -13.27459 -13.05340 -12.60867 -12.48729 -12.30611 -12.14558 -11.85499 -11.72491 -11.58489 -11.48083 -11.24719 -10.63588 -10.49754 -10.23890 -10.20099 -10.11730 -9.95261 -9.93608 -9.91902 -9.65992 -9.46299 -9.24338 -8.76793 -8.54544 -6.96278 -5.94032 -3.28948 0.23107 0.92688 1.32881 1.77344 3.18769 3.34260 3.34858 3.49123 3.51007 3.52994 3.95560 4.48305 4.54737 4.77034 4.91090 4.93156 4.96053 4.98278 5.02936 5.08033 5.13438 5.26786 5.31469 5.37692 5.46605 5.62509 5.73635 5.90260 5.92346 6.01832 6.08161 6.20751 6.32786 6.40208 6.44057 6.60972 6.62493 6.66785 6.72810 6.78342 6.96196 7.17386 7.75726 7.96355 8.32913 8.33412 8.94762 9.73442 10.10905 11.21892 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.003750 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.643101 B = 7465.784797 C = 8123.463554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.140 3.860 4 C 0.018 3.982 5 N -0.421 5.421 6 C 0.014 3.986 7 C 0.591 3.409 8 O -0.541 6.541 9 N -0.694 5.694 10 C 0.158 3.842 11 H 0.081 0.919 12 C -0.147 4.147 13 C 0.129 3.871 14 N -0.605 5.605 15 C -0.259 4.259 16 H 0.086 0.914 17 C 0.025 3.975 18 N -0.908 5.908 19 Si 0.880 3.120 20 H -0.291 1.291 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.154 3.846 24 C -0.119 4.119 25 H 0.088 0.912 26 C -0.143 4.143 27 C -0.222 4.222 28 S 0.228 5.772 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.410 0.590 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.020 0.980 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 -11.582 20.866 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.262 4.262 5 N -0.138 5.138 6 C -0.121 4.121 7 C 0.374 3.626 8 O -0.419 6.419 9 N -0.345 5.345 10 C 0.054 3.946 11 H 0.099 0.901 12 C -0.187 4.187 13 C 0.004 3.996 14 N -0.328 5.328 15 C -0.387 4.387 16 H 0.104 0.896 17 C -0.174 4.174 18 N -0.551 5.551 19 Si 0.711 3.289 20 H -0.218 1.218 21 H -0.233 1.233 22 H -0.195 1.195 23 C 0.028 3.972 24 C -0.140 4.140 25 H 0.106 0.894 26 C -0.200 4.200 27 C -0.365 4.365 28 S 0.485 5.515 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.248 0.752 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.553 -11.608 21.426 25.234 hybrid contribution -0.110 0.938 0.032 0.945 sum -6.663 -10.670 21.458 24.873 Atomic orbital electron populations 1.22817 0.79869 1.03342 1.00470 1.87950 1.20396 1.26245 1.95554 1.20786 0.84224 0.86132 1.02822 1.26571 1.00736 1.06909 0.91968 1.66881 1.03226 1.12322 1.31342 1.20538 0.89930 1.07903 0.93770 1.17004 0.86511 0.76971 0.82102 1.90788 1.16033 1.51227 1.83881 1.46008 1.12055 1.71753 1.04671 1.20986 0.90699 0.97359 0.85559 0.90099 1.22332 0.99602 0.95650 1.01108 1.21181 0.91816 0.96166 0.90459 1.44347 1.61209 1.11565 1.15674 1.18919 1.44893 0.88999 0.85880 0.89604 1.25230 0.99630 0.96288 0.96236 1.69840 1.51466 1.06347 1.27457 0.86980 0.77845 0.78879 0.85211 1.21845 1.23252 1.19497 1.20942 0.92399 0.84652 0.99246 1.21939 1.00374 0.94917 0.96722 0.89392 1.21767 1.00821 0.96049 1.01412 1.26683 1.06165 1.06733 0.96889 1.82726 0.94736 1.63084 1.10977 0.93355 0.89109 0.93733 0.90722 0.89615 0.75219 0.92182 0.90578 0.91170 0.95785 0.92815 0.96221 0.91453 0.92458 0.93115 0.92927 0.79103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.79 10.69 -35.23 -0.38 -4.17 16 3 C 0.14 1.26 6.51 36.01 0.23 1.49 16 4 C 0.02 0.20 6.97 -13.61 -0.09 0.11 16 5 N -0.42 -6.04 10.12 -8.51 -0.09 -6.13 16 6 C 0.01 0.21 6.70 -84.52 -0.57 -0.36 16 7 C 0.59 10.01 7.76 -12.59 -0.10 9.92 16 8 O -0.54 -10.18 16.37 5.26 0.09 -10.09 16 9 N -0.69 -11.61 3.60 -54.89 -0.20 -11.81 16 10 C 0.16 2.68 2.21 -67.89 -0.15 2.53 16 11 H 0.08 1.36 7.58 -51.93 -0.39 0.96 16 12 C -0.15 -2.82 5.75 -26.83 -0.15 -2.98 16 13 C 0.13 2.92 3.91 -3.93 -0.02 2.91 16 14 N -0.60 -14.30 2.78 -172.58 -0.48 -14.78 16 15 C -0.26 -7.22 10.04 -15.06 -0.15 -7.37 16 16 H 0.09 2.54 8.05 -52.49 -0.42 2.11 16 17 C 0.02 0.73 5.23 -17.43 -0.09 0.64 16 18 N -0.91 -28.02 13.97 55.49 0.78 -27.24 16 19 Si 0.88 22.88 24.35 -169.99 -4.14 18.74 16 20 H -0.29 -7.44 6.70 56.52 0.38 -7.06 16 21 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 22 H -0.27 -6.91 6.48 56.52 0.37 -6.54 16 23 C 0.15 2.97 5.51 -3.71 -0.02 2.95 16 24 C -0.12 -1.93 2.67 -90.50 -0.24 -2.17 16 25 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 26 C -0.14 -1.92 9.06 37.16 0.34 -1.58 16 27 C -0.22 -2.61 10.62 29.65 0.31 -2.29 16 28 S 0.23 2.01 22.92 -107.50 -2.46 -0.45 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.41 6.91 6.25 -40.82 -0.25 6.65 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.07 1.75 4.49 -51.93 -0.23 1.52 16 38 H 0.02 0.56 6.60 -51.93 -0.34 0.21 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.02 0.37 6.64 -51.92 -0.34 0.03 16 41 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.71 7.53 -51.93 -0.39 0.32 16 45 H 0.19 1.97 8.03 -52.49 -0.42 1.55 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -33.96 371.88 -7.50 -41.46 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.64 Total: 3.76 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 0.41 Total: 5.10 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.01 Total: -59.95 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.29 Total: -14.27 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.14 Total: 18.74 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.46 Total: -0.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.96 -7.50 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945642652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.733 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds