Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42900 * 113.99786 * 2 1 4 4 C 1.50701 * 109.46517 * 179.97438 * 3 2 1 5 5 N 1.28647 * 124.71914 * 90.00115 * 4 3 2 6 6 C 1.33567 * 115.76764 * 180.02562 * 5 4 3 7 7 C 1.47264 * 123.14559 * 179.97438 * 6 5 4 8 8 O 1.21622 * 120.00427 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99751 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00202 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.45476 * 35.02528 * 10 9 7 12 12 C 1.53041 * 109.45590 * 275.06968 * 10 9 7 13 13 C 1.52759 * 109.38448 * 301.21486 * 12 10 9 14 14 N 1.46931 * 109.00997 * 305.59177 * 13 12 10 15 15 C 1.36936 * 120.62927 * 233.58601 * 14 13 12 16 16 H 1.08002 * 120.00172 * 153.10341 * 15 14 13 17 17 C 1.38812 * 120.00088 * 333.10162 * 15 14 13 18 18 N 1.31611 * 120.00091 * 158.91661 * 17 15 14 19 19 Si 1.86798 * 119.99879 * 339.18673 * 17 15 14 20 20 H 1.48497 * 109.47270 * 95.07383 * 19 17 15 21 21 H 1.48502 * 109.47210 * 215.07047 * 19 17 15 22 22 H 1.48506 * 109.47531 * 335.07041 * 19 17 15 23 23 C 1.46922 * 118.73721 * 53.30446 * 14 13 12 24 24 C 1.53039 * 109.46164 * 155.00030 * 10 9 7 25 25 H 1.09003 * 109.49537 * 178.60580 * 24 10 9 26 26 C 1.53001 * 109.49758 * 298.70399 * 24 10 9 27 27 C 1.35204 * 113.71134 * 0.26947 * 6 5 4 28 28 S 1.70770 * 124.71963 * 270.03444 * 4 3 2 29 29 H 1.09005 * 109.46599 * 60.00331 * 1 2 3 30 30 H 1.08997 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47187 * 300.00569 * 1 2 3 32 32 H 1.08994 * 109.47420 * 59.99445 * 3 2 1 33 33 H 1.09001 * 109.47116 * 299.99375 * 3 2 1 34 34 H 0.97003 * 120.00095 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.50030 * 61.29826 * 12 10 9 36 36 H 1.09004 * 109.49320 * 181.35523 * 12 10 9 37 37 H 1.08999 * 109.51124 * 185.70870 * 13 12 10 38 38 H 1.08996 * 109.43310 * 65.42539 * 13 12 10 39 39 H 0.97001 * 120.00195 * 180.02562 * 18 17 15 40 40 H 1.09009 * 109.58554 * 66.43557 * 23 14 13 41 41 H 1.08996 * 109.58909 * 186.71570 * 23 14 13 42 42 H 1.08999 * 109.46678 * 179.84163 * 26 24 10 43 43 H 1.09005 * 109.46593 * 299.83899 * 26 24 10 44 44 H 1.08998 * 109.47304 * 59.83805 * 26 24 10 45 45 H 1.08000 * 125.58379 * 179.73301 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2434 1.1283 -1.0565 6 6 5.5586 1.0235 -0.8481 7 6 6.5431 0.9447 -1.9404 8 8 7.7285 0.8498 -1.6851 9 7 6.1306 0.9777 -3.2231 10 6 7.1099 0.8987 -4.3098 11 1 7.9276 0.2412 -4.0145 12 6 7.6603 2.2964 -4.6026 13 6 6.5091 3.2246 -4.9858 14 7 5.7610 2.6247 -6.0991 15 6 5.5354 3.3323 -7.2496 16 1 5.3955 2.8115 -8.1853 17 6 5.4866 4.7191 -7.2132 18 7 5.6866 5.4137 -8.3131 19 14 5.1446 5.5996 -5.6017 20 1 6.4300 5.9832 -4.9647 21 1 4.3395 6.8193 -5.8651 22 1 4.3924 4.6965 -4.6939 23 6 5.2651 1.2491 -5.9570 24 6 6.4349 0.3411 -5.5649 25 1 7.1569 0.3053 -6.3808 26 6 5.9139 -1.0692 -5.2808 27 6 5.9009 0.9903 0.4595 28 16 4.4815 1.1089 1.4047 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 5.1853 1.0538 -3.4267 35 1 8.1614 2.6834 -3.7153 36 1 8.3712 2.2420 -5.4271 37 1 6.9078 4.1916 -5.2925 38 1 5.8477 3.3547 -4.1294 39 1 5.6528 6.3828 -8.2876 40 1 4.5000 1.2148 -5.1812 41 1 4.8409 0.9139 -6.9034 42 1 5.4308 -1.4648 -6.1742 43 1 6.7468 -1.7148 -5.0020 44 1 5.1932 -1.0326 -4.4639 45 1 6.9066 0.9050 0.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000945642652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = -33.591239 kcal Electronic energy + Delta-G solvation = -28060.293345 eV Core-core repulsion = 24204.679805 eV Total energy + Delta-G solvation = -3855.613540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.82069 -40.58734 -39.20448 -38.60899 -36.15088 -34.07444 -33.43342 -32.76800 -31.93061 -29.21540 -27.87707 -27.48314 -26.87966 -25.79372 -23.68172 -23.23887 -22.59764 -21.03376 -20.35698 -19.95390 -18.82090 -17.63124 -17.61052 -17.43766 -17.03273 -16.70243 -16.58388 -16.35503 -15.99049 -15.57183 -15.48326 -15.21940 -14.96098 -14.77242 -14.62060 -14.25008 -13.93751 -13.69171 -13.50770 -13.22947 -13.18432 -13.02789 -12.95429 -12.86050 -12.37991 -12.31080 -12.13545 -11.97142 -11.70674 -11.46500 -11.38455 -11.23420 -10.98518 -10.79620 -10.75606 -10.70454 -10.22807 -9.92761 -8.96369 -8.19339 -5.49588 -0.63063 0.15399 0.48569 0.75577 1.25238 1.35007 1.44130 2.15256 2.19912 2.37866 2.62087 3.00451 3.18017 3.30095 3.64336 3.72750 3.87924 4.01760 4.03270 4.14952 4.16789 4.18398 4.38282 4.39726 4.51069 4.53424 4.54577 4.60039 4.67692 4.72991 4.83524 4.87487 4.89851 4.90426 4.98539 5.10447 5.17676 5.25057 5.39403 5.52205 5.83628 6.05858 6.10625 6.22596 6.53891 6.87557 7.06091 7.59055 8.00380 9.00420 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.003750 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.643101 B = 7465.784797 C = 8123.463554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.137 3.863 4 C -0.006 4.006 5 N -0.454 5.454 6 C -0.019 4.019 7 C 0.590 3.410 8 O -0.567 6.567 9 N -0.694 5.694 10 C 0.164 3.836 11 H 0.089 0.911 12 C -0.139 4.139 13 C 0.132 3.868 14 N -0.615 5.615 15 C -0.244 4.244 16 H 0.061 0.939 17 C -0.029 4.029 18 N -0.953 5.953 19 Si 0.939 3.061 20 H -0.287 1.287 21 H -0.308 1.308 22 H -0.264 1.264 23 C 0.151 3.849 24 C -0.107 4.107 25 H 0.084 0.916 26 C -0.133 4.133 27 C -0.230 4.230 28 S 0.331 5.669 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.410 0.590 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.031 0.969 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 -12.946 24.099 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.058 3.942 4 C -0.284 4.284 5 N -0.172 5.172 6 C -0.155 4.155 7 C 0.374 3.626 8 O -0.448 6.448 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.107 0.893 12 C -0.179 4.179 13 C 0.007 3.993 14 N -0.339 5.339 15 C -0.373 4.373 16 H 0.078 0.922 17 C -0.224 4.224 18 N -0.600 5.600 19 Si 0.769 3.231 20 H -0.214 1.214 21 H -0.237 1.237 22 H -0.188 1.188 23 C 0.026 3.974 24 C -0.128 4.128 25 H 0.103 0.897 26 C -0.191 4.191 27 C -0.373 4.373 28 S 0.589 5.411 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.247 0.753 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.498 -13.012 24.703 28.910 hybrid contribution 0.129 1.278 -0.880 1.556 sum -7.369 -11.735 23.823 27.560 Atomic orbital electron populations 1.23002 0.78238 1.04254 1.01510 1.87902 1.22231 1.26813 1.95777 1.20961 0.82931 0.86151 1.04158 1.27090 1.02073 1.06307 0.92950 1.66850 1.03228 1.13830 1.33265 1.20286 0.90076 1.11155 0.93939 1.17355 0.86727 0.75985 0.82497 1.90757 1.17182 1.52511 1.84301 1.45971 1.11764 1.71926 1.04759 1.20891 0.91185 0.95873 0.86109 0.89260 1.22224 0.98244 0.96435 1.01022 1.21093 0.92679 0.95809 0.89744 1.44447 1.61862 1.12914 1.14710 1.18910 1.42728 0.89142 0.86554 0.92160 1.25765 1.00619 0.97181 0.98806 1.69948 1.54034 1.06485 1.29503 0.86027 0.77605 0.77612 0.81884 1.21438 1.23707 1.18831 1.21126 0.93875 0.82764 0.99626 1.21802 0.98869 0.95914 0.96191 0.89722 1.21688 1.01322 0.94035 1.02059 1.27019 1.08330 1.05150 0.96804 1.82343 0.91241 1.60008 1.07556 0.93353 0.88353 0.91640 0.87354 0.90345 0.75290 0.92006 0.90715 0.93749 0.95907 0.92975 0.95156 0.91639 0.91170 0.91727 0.92895 0.78133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.24 10.69 -148.98 -1.59 -8.83 16 3 C 0.14 2.15 6.51 71.24 0.46 2.61 16 4 C -0.01 -0.11 6.97 88.58 0.62 0.50 16 5 N -0.45 -12.48 10.12 -180.83 -1.83 -14.31 16 6 C -0.02 -0.53 6.70 40.55 0.27 -0.26 16 7 C 0.59 19.50 7.76 86.62 0.67 20.18 16 8 O -0.57 -20.93 16.37 -4.10 -0.07 -21.00 16 9 N -0.69 -22.56 3.60 -445.83 -1.60 -24.17 16 10 C 0.16 5.38 2.21 45.02 0.10 5.48 16 11 H 0.09 2.85 7.58 -2.39 -0.02 2.83 16 12 C -0.14 -5.28 5.75 30.53 0.18 -5.11 16 13 C 0.13 5.94 3.91 86.22 0.34 6.28 16 14 N -0.62 -29.13 2.78 -699.93 -1.95 -31.08 16 15 C -0.24 -13.87 10.04 84.03 0.84 -13.02 16 16 H 0.06 3.68 8.05 -2.91 -0.02 3.66 16 17 C -0.03 -1.70 5.23 84.86 0.44 -1.26 16 18 N -0.95 -60.49 13.97 21.65 0.30 -60.19 16 19 Si 0.94 48.27 24.35 68.60 1.67 49.94 16 20 H -0.29 -14.42 6.70 99.48 0.67 -13.76 16 21 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 22 H -0.26 -13.11 6.48 99.48 0.64 -12.47 16 23 C 0.15 5.70 5.51 86.36 0.48 6.18 16 24 C -0.11 -3.34 2.67 -10.72 -0.03 -3.37 16 25 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 26 C -0.13 -3.27 9.06 71.98 0.65 -2.62 16 27 C -0.23 -4.90 10.62 67.12 0.71 -4.19 16 28 S 0.33 4.73 22.92 -56.49 -1.29 3.44 16 29 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.41 13.44 6.25 -92.71 -0.58 12.86 16 35 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.04 2.23 4.49 -2.39 -0.01 2.22 16 38 H 0.02 1.04 6.60 -2.39 -0.02 1.03 16 39 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.03 1.11 6.64 -2.38 -0.02 1.09 16 41 H 0.07 2.48 7.93 -2.39 -0.02 2.47 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.05 1.31 7.53 -2.39 -0.02 1.29 16 45 H 0.20 3.72 8.03 -2.91 -0.02 3.69 16 Total: -1.00 -74.87 371.88 0.95 -73.92 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.33 Total: 19.35 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.98 Total: 12.92 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -5.08 Total: -129.73 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -1.66 Total: -29.83 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.67 Total: 49.94 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.29 Total: 3.44 kcal Total: -74.87 0.95 -73.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945642652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.326 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds