Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00365 * 2 1 4 4 C 1.50697 * 109.47320 * 180.02562 * 3 2 1 5 5 N 1.30942 * 122.90372 * 269.71311 * 4 3 2 6 6 C 1.29428 * 117.36374 * 179.75310 * 5 4 3 7 7 S 1.70950 * 110.39276 * 0.48890 * 6 5 4 8 8 C 1.35664 * 122.90633 * 89.99825 * 4 3 2 9 9 C 1.46681 * 126.12798 * 0.02562 * 8 4 3 10 10 O 1.21690 * 120.00141 * 0.02562 * 9 8 4 11 11 N 1.34775 * 119.99694 * 179.97438 * 9 8 4 12 12 C 1.46506 * 119.99741 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.45857 * 34.97543 * 12 11 9 14 14 C 1.53040 * 109.46028 * 275.00421 * 12 11 9 15 15 C 1.53192 * 109.31077 * 178.61697 * 14 12 11 16 16 N 1.46925 * 108.77862 * 54.63171 * 15 14 12 17 17 C 1.36934 * 120.62891 * 126.36716 * 16 15 14 18 18 H 1.08003 * 119.99942 * 221.18578 * 17 16 15 19 19 C 1.38816 * 120.00389 * 41.18931 * 17 16 15 20 20 N 1.31614 * 120.00220 * 214.83816 * 19 17 16 21 21 Si 1.86799 * 119.99711 * 34.83091 * 19 17 16 22 22 H 1.48504 * 109.47115 * 84.63186 * 21 19 17 23 23 H 1.48499 * 109.47394 * 204.63341 * 21 19 17 24 24 H 1.48500 * 109.47463 * 324.63467 * 21 19 17 25 25 C 1.46924 * 118.74037 * 306.39347 * 16 15 14 26 26 H 1.09002 * 109.58465 * 293.82275 * 25 16 15 27 27 C 1.52997 * 109.58959 * 173.53424 * 25 16 15 28 28 C 1.53043 * 109.45971 * 154.93588 * 12 11 9 29 29 H 1.09004 * 109.46735 * 300.00272 * 1 2 3 30 30 H 1.09002 * 109.47375 * 59.99759 * 1 2 3 31 31 H 1.08997 * 109.47577 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47038 * 60.00153 * 3 2 1 33 33 H 1.09007 * 109.46945 * 300.00256 * 3 2 1 34 34 H 1.08005 * 124.80559 * 180.22698 * 6 5 4 35 35 H 0.97000 * 120.00483 * 0.02562 * 11 9 8 36 36 H 1.09008 * 109.49705 * 298.56349 * 14 12 11 37 37 H 1.08996 * 109.50164 * 58.66253 * 14 12 11 38 38 H 1.09001 * 109.58499 * 174.42330 * 15 14 12 39 39 H 1.08995 * 109.58965 * 294.70334 * 15 14 12 40 40 H 0.97001 * 120.00478 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.46760 * 59.99982 * 27 25 16 42 42 H 1.09001 * 109.47577 * 179.97438 * 27 25 16 43 43 H 1.09004 * 109.47259 * 300.00445 * 27 25 16 44 44 H 1.09004 * 109.49406 * 301.34028 * 28 12 11 45 45 H 1.08994 * 109.49901 * 61.43202 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 7 4.2225 1.1354 1.0984 6 6 5.5062 1.0282 0.9730 7 16 5.9424 0.9938 -0.6796 8 6 4.2468 1.1283 -1.1399 9 6 3.7231 1.1705 -2.5094 10 8 2.5250 1.2664 -2.7000 11 7 4.5689 1.1041 -3.5566 12 6 4.0458 1.1468 -4.9245 13 1 3.1791 1.8067 -4.9614 14 6 3.6327 -0.2620 -5.3566 15 6 3.0544 -0.2080 -6.7741 16 7 4.0355 0.4319 -7.6611 17 6 4.4467 -0.1893 -8.8100 18 1 5.4876 -0.1603 -9.0968 19 6 3.5258 -0.8564 -9.6063 20 7 3.8795 -1.9511 -10.2456 21 14 1.7845 -0.2002 -9.7702 22 1 1.7451 0.8398 -10.8295 23 1 0.8689 -1.3115 -10.1332 24 1 1.3553 0.3928 -8.4782 25 6 4.5675 1.7506 -7.2915 26 1 3.7683 2.4909 -7.3301 27 6 5.6802 2.1459 -8.2644 28 6 5.1289 1.6746 -5.8682 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 6.2036 0.9728 1.7958 35 1 5.5239 1.0280 -3.4047 36 1 4.5042 -0.9167 -5.3439 37 1 2.8782 -0.6465 -4.6703 38 1 2.8504 -1.2198 -7.1243 39 1 2.1306 0.3704 -6.7701 40 1 3.2359 -2.4174 -10.8017 41 1 5.2794 2.1877 -9.2771 42 1 6.0732 3.1246 -7.9888 43 1 6.4805 1.4071 -8.2206 44 1 5.4393 2.6686 -5.5459 45 1 5.9862 1.0018 -5.8507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947796606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -6.958334 kcal Electronic energy + Delta-G solvation = -27706.129431 eV Core-core repulsion = 23851.670780 eV Total energy + Delta-G solvation = -3854.458651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.69096 -39.48220 -37.80977 -37.59815 -34.76838 -32.46176 -31.93413 -31.43158 -30.25746 -28.23722 -26.60164 -26.28410 -24.79665 -24.66968 -22.63831 -22.05697 -20.44059 -20.04163 -19.23551 -18.79445 -17.14061 -16.68904 -16.41503 -16.10966 -15.66257 -15.38089 -15.17437 -15.08779 -14.71853 -14.49599 -14.21013 -13.91521 -13.59652 -13.38307 -13.15604 -13.09996 -12.64064 -12.45793 -12.07080 -11.77197 -11.73045 -11.47972 -11.31862 -11.05897 -10.98744 -10.60466 -10.49093 -10.32738 -10.30703 -10.11106 -10.02201 -9.87975 -9.86795 -9.59912 -9.45594 -9.35444 -8.88830 -8.36093 -6.72872 -6.08743 -3.39391 -0.10066 0.82087 1.19438 2.07800 2.96121 3.06479 3.42091 3.52485 3.58428 3.61974 4.08985 4.57881 4.60066 4.65897 4.80992 4.90202 5.13628 5.16950 5.23848 5.26630 5.34517 5.40001 5.43281 5.59453 5.61323 5.70819 5.79721 6.00585 6.03969 6.14953 6.24569 6.28822 6.39662 6.43579 6.54713 6.65404 6.84948 6.89052 6.99171 7.00969 7.09479 7.22005 7.43900 8.02817 8.08455 8.41632 8.99570 9.71790 10.20515 11.06632 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.003093 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.538723 B = 9051.195717 C =10229.103151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.379 6.379 3 C 0.129 3.871 4 C 0.135 3.865 5 N -0.463 5.463 6 C 0.030 3.970 7 S 0.173 5.827 8 C -0.264 4.264 9 C 0.592 3.408 10 O -0.516 6.516 11 N -0.715 5.715 12 C 0.152 3.848 13 H 0.085 0.915 14 C -0.143 4.143 15 C 0.147 3.853 16 N -0.595 5.595 17 C -0.277 4.277 18 H 0.077 0.923 19 C 0.051 3.949 20 N -0.880 5.880 21 Si 0.841 3.159 22 H -0.288 1.288 23 H -0.297 1.297 24 H -0.259 1.259 25 C 0.168 3.832 26 H 0.029 0.971 27 C -0.133 4.133 28 C -0.135 4.135 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.208 0.792 35 H 0.394 0.606 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 8.129 22.043 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.050 3.950 4 C -0.003 4.003 5 N -0.176 5.176 6 C -0.265 4.265 7 S 0.428 5.572 8 C -0.389 4.389 9 C 0.377 3.623 10 O -0.393 6.393 11 N -0.365 5.365 12 C 0.049 3.951 13 H 0.103 0.897 14 C -0.183 4.183 15 C 0.021 3.979 16 N -0.320 5.320 17 C -0.404 4.404 18 H 0.094 0.906 19 C -0.152 4.152 20 N -0.518 5.518 21 Si 0.668 3.332 22 H -0.215 1.215 23 H -0.224 1.224 24 H -0.184 1.184 25 C 0.062 3.938 26 H 0.046 0.954 27 C -0.190 4.190 28 C -0.175 4.175 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.224 0.776 35 H 0.228 0.772 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.462 7.822 21.772 23.392 hybrid contribution -1.479 0.433 0.085 1.543 sum 1.983 8.255 21.857 23.448 Atomic orbital electron populations 1.22731 0.80354 1.02877 1.00125 1.87888 1.20067 1.26330 1.95507 1.21022 0.85069 0.86345 1.02581 1.20243 0.97236 0.97547 0.85255 1.66028 1.04970 1.15489 1.31144 1.28696 0.95200 1.02208 1.00423 1.83982 1.05356 1.64391 1.03452 1.25765 0.96580 1.17069 0.99516 1.16658 0.86361 0.77088 0.82236 1.90803 1.14291 1.49548 1.84680 1.46216 1.09604 1.74058 1.06648 1.21098 0.97515 0.98464 0.78045 0.89652 1.22450 1.01274 0.95427 0.99176 1.21256 0.91335 0.97839 0.87458 1.44416 1.49805 1.15195 1.22534 1.18567 0.93465 1.29475 0.98935 0.90570 1.25583 0.97439 0.95946 0.96196 1.70075 1.36264 1.13797 1.31695 0.87391 0.87032 0.79375 0.79372 1.21504 1.22380 1.18412 1.20473 0.94437 0.88346 0.90565 0.95379 1.21750 0.98360 0.98668 1.00249 1.22376 0.97981 1.00017 0.97083 0.94211 0.93430 0.89530 0.91921 0.88830 0.77558 0.77219 0.91751 0.92385 0.91196 0.95531 0.92696 0.91613 0.94293 0.92452 0.92319 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.39 10.69 -35.23 -0.38 -5.76 16 3 C 0.13 1.66 5.75 36.00 0.21 1.87 16 4 C 0.14 1.76 6.42 -83.89 -0.54 1.22 16 5 N -0.46 -5.38 10.50 -11.53 -0.12 -5.50 16 6 C 0.03 0.25 12.22 51.75 0.63 0.88 16 7 S 0.17 1.42 22.35 -107.50 -2.40 -0.99 16 8 C -0.26 -3.30 6.48 -37.10 -0.24 -3.54 16 9 C 0.59 8.69 7.74 -12.85 -0.10 8.59 16 10 O -0.52 -9.04 13.93 5.20 0.07 -8.97 16 11 N -0.72 -9.61 5.07 -55.07 -0.28 -9.89 16 12 C 0.15 2.42 2.42 -67.88 -0.16 2.25 16 13 H 0.09 1.49 7.57 -51.93 -0.39 1.09 16 14 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 15 C 0.15 3.19 4.59 -3.71 -0.02 3.18 16 16 N -0.60 -13.52 2.47 -164.78 -0.41 -13.93 16 17 C -0.28 -7.33 8.42 -15.06 -0.13 -7.45 16 18 H 0.08 2.15 6.83 -52.48 -0.36 1.79 16 19 C 0.05 1.43 4.82 -17.43 -0.08 1.35 16 20 N -0.88 -26.01 13.97 55.49 0.78 -25.23 16 21 Si 0.84 21.25 27.39 -169.99 -4.66 16.59 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 24 H -0.26 -6.34 5.24 56.52 0.30 -6.05 16 25 C 0.17 3.16 3.49 -67.60 -0.24 2.93 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 C -0.13 -2.34 8.07 37.16 0.30 -2.04 16 28 C -0.13 -2.07 4.85 -26.61 -0.13 -2.19 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.28 6.00 -51.93 -0.31 0.97 16 34 H 0.21 0.80 8.06 -52.48 -0.42 0.37 16 35 H 0.39 4.31 7.79 -40.82 -0.32 3.99 16 36 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.65 7.02 -51.93 -0.36 1.28 16 39 H 0.03 0.59 6.71 -51.93 -0.35 0.24 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.06 1.28 7.68 -51.93 -0.40 0.88 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.05 7.42 -51.93 -0.39 0.66 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -32.81 372.56 -8.08 -40.90 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.77 Total: 1.42 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 0.47 Total: 5.77 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.03 Total: -54.56 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.30 Total: -14.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.66 Total: 16.59 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.40 Total: -0.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.81 -8.08 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947796606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.937 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds