Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00365 * 2 1 4 4 C 1.50697 * 109.47320 * 180.02562 * 3 2 1 5 5 N 1.30942 * 122.90372 * 269.71311 * 4 3 2 6 6 C 1.29428 * 117.36374 * 179.75310 * 5 4 3 7 7 S 1.70950 * 110.39276 * 0.48890 * 6 5 4 8 8 C 1.35664 * 122.90633 * 89.99825 * 4 3 2 9 9 C 1.46681 * 126.12798 * 0.02562 * 8 4 3 10 10 O 1.21690 * 120.00141 * 0.02562 * 9 8 4 11 11 N 1.34775 * 119.99694 * 179.97438 * 9 8 4 12 12 C 1.46506 * 119.99741 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.45857 * 34.97543 * 12 11 9 14 14 C 1.53040 * 109.46028 * 275.00421 * 12 11 9 15 15 C 1.53192 * 109.31077 * 178.61697 * 14 12 11 16 16 N 1.46925 * 108.77862 * 54.63171 * 15 14 12 17 17 C 1.36934 * 120.62891 * 126.36716 * 16 15 14 18 18 H 1.08003 * 119.99942 * 221.18578 * 17 16 15 19 19 C 1.38816 * 120.00389 * 41.18931 * 17 16 15 20 20 N 1.31614 * 120.00220 * 214.83816 * 19 17 16 21 21 Si 1.86799 * 119.99711 * 34.83091 * 19 17 16 22 22 H 1.48504 * 109.47115 * 84.63186 * 21 19 17 23 23 H 1.48499 * 109.47394 * 204.63341 * 21 19 17 24 24 H 1.48500 * 109.47463 * 324.63467 * 21 19 17 25 25 C 1.46924 * 118.74037 * 306.39347 * 16 15 14 26 26 H 1.09002 * 109.58465 * 293.82275 * 25 16 15 27 27 C 1.52997 * 109.58959 * 173.53424 * 25 16 15 28 28 C 1.53043 * 109.45971 * 154.93588 * 12 11 9 29 29 H 1.09004 * 109.46735 * 300.00272 * 1 2 3 30 30 H 1.09002 * 109.47375 * 59.99759 * 1 2 3 31 31 H 1.08997 * 109.47577 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47038 * 60.00153 * 3 2 1 33 33 H 1.09007 * 109.46945 * 300.00256 * 3 2 1 34 34 H 1.08005 * 124.80559 * 180.22698 * 6 5 4 35 35 H 0.97000 * 120.00483 * 0.02562 * 11 9 8 36 36 H 1.09008 * 109.49705 * 298.56349 * 14 12 11 37 37 H 1.08996 * 109.50164 * 58.66253 * 14 12 11 38 38 H 1.09001 * 109.58499 * 174.42330 * 15 14 12 39 39 H 1.08995 * 109.58965 * 294.70334 * 15 14 12 40 40 H 0.97001 * 120.00478 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.46760 * 59.99982 * 27 25 16 42 42 H 1.09001 * 109.47577 * 179.97438 * 27 25 16 43 43 H 1.09004 * 109.47259 * 300.00445 * 27 25 16 44 44 H 1.09004 * 109.49406 * 301.34028 * 28 12 11 45 45 H 1.08994 * 109.49901 * 61.43202 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 7 4.2225 1.1354 1.0984 6 6 5.5062 1.0282 0.9730 7 16 5.9424 0.9938 -0.6796 8 6 4.2468 1.1283 -1.1399 9 6 3.7231 1.1705 -2.5094 10 8 2.5250 1.2664 -2.7000 11 7 4.5689 1.1041 -3.5566 12 6 4.0458 1.1468 -4.9245 13 1 3.1791 1.8067 -4.9614 14 6 3.6327 -0.2620 -5.3566 15 6 3.0544 -0.2080 -6.7741 16 7 4.0355 0.4319 -7.6611 17 6 4.4467 -0.1893 -8.8100 18 1 5.4876 -0.1603 -9.0968 19 6 3.5258 -0.8564 -9.6063 20 7 3.8795 -1.9511 -10.2456 21 14 1.7845 -0.2002 -9.7702 22 1 1.7451 0.8398 -10.8295 23 1 0.8689 -1.3115 -10.1332 24 1 1.3553 0.3928 -8.4782 25 6 4.5675 1.7506 -7.2915 26 1 3.7683 2.4909 -7.3301 27 6 5.6802 2.1459 -8.2644 28 6 5.1289 1.6746 -5.8682 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 6.2036 0.9728 1.7958 35 1 5.5239 1.0280 -3.4047 36 1 4.5042 -0.9167 -5.3439 37 1 2.8782 -0.6465 -4.6703 38 1 2.8504 -1.2198 -7.1243 39 1 2.1306 0.3704 -6.7701 40 1 3.2359 -2.4174 -10.8017 41 1 5.2794 2.1877 -9.2771 42 1 6.0732 3.1246 -7.9888 43 1 6.4805 1.4071 -8.2206 44 1 5.4393 2.6686 -5.5459 45 1 5.9862 1.0018 -5.8507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947796606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -30.950556 kcal Electronic energy + Delta-G solvation = -27707.169811 eV Core-core repulsion = 23851.670780 eV Total energy + Delta-G solvation = -3855.499031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63354 -40.59715 -39.24021 -38.55828 -36.19168 -34.29471 -33.29975 -32.62688 -31.74584 -29.26095 -28.00272 -27.19717 -26.39688 -25.59678 -24.18462 -23.35947 -21.78475 -21.40481 -20.44933 -19.66687 -18.44795 -17.98970 -17.58921 -17.28143 -16.97295 -16.54053 -16.30232 -16.23837 -16.15138 -15.73377 -15.26958 -15.17819 -15.00668 -14.80300 -14.62468 -14.43379 -13.99400 -13.92729 -13.37614 -13.31389 -12.79298 -12.69488 -12.57778 -12.54618 -12.47081 -12.34578 -12.07749 -11.92585 -11.67274 -11.60462 -11.45311 -11.21096 -10.85660 -10.69452 -10.58997 -10.47065 -10.17782 -10.03003 -8.63912 -8.24525 -5.49802 -0.89313 0.09325 0.47675 1.25599 1.36639 1.44233 1.52283 1.89631 1.98294 2.48428 2.83583 2.95134 3.30116 3.41275 3.63317 3.79692 3.88701 3.97482 4.07389 4.21423 4.29791 4.33817 4.44174 4.50467 4.53300 4.56869 4.62395 4.66481 4.74713 4.79682 4.88778 4.92436 5.00937 5.06268 5.09933 5.11312 5.25411 5.40572 5.51654 5.62056 5.95986 6.09405 6.30003 6.33056 6.51100 7.01784 7.03339 7.68059 8.19113 8.95209 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.003093 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.538723 B = 9051.195717 C =10229.103151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.406 6.406 3 C 0.127 3.873 4 C 0.126 3.874 5 N -0.493 5.493 6 C 0.044 3.956 7 S 0.243 5.757 8 C -0.304 4.304 9 C 0.592 3.408 10 O -0.553 6.553 11 N -0.704 5.704 12 C 0.162 3.838 13 H 0.073 0.927 14 C -0.131 4.131 15 C 0.147 3.853 16 N -0.607 5.607 17 C -0.254 4.254 18 H 0.054 0.946 19 C 0.001 3.999 20 N -0.926 5.926 21 Si 0.893 3.107 22 H -0.291 1.291 23 H -0.304 1.304 24 H -0.249 1.249 25 C 0.158 3.842 26 H 0.032 0.968 27 C -0.126 4.126 28 C -0.121 4.121 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.251 0.749 35 H 0.409 0.591 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.095 0.905 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 9.807 24.787 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C 0.048 3.952 4 C -0.013 4.013 5 N -0.208 5.208 6 C -0.250 4.250 7 S 0.500 5.500 8 C -0.429 4.429 9 C 0.378 3.622 10 O -0.433 6.433 11 N -0.355 5.355 12 C 0.058 3.942 13 H 0.091 0.909 14 C -0.171 4.171 15 C 0.021 3.979 16 N -0.332 5.332 17 C -0.383 4.383 18 H 0.072 0.928 19 C -0.197 4.197 20 N -0.568 5.568 21 Si 0.720 3.280 22 H -0.218 1.218 23 H -0.231 1.231 24 H -0.174 1.174 25 C 0.053 3.947 26 H 0.050 0.950 27 C -0.184 4.184 28 C -0.160 4.160 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.267 0.733 35 H 0.245 0.755 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.113 0.887 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.267 9.537 24.552 26.861 hybrid contribution -1.907 -0.067 -0.648 2.015 sum 3.360 9.470 23.904 25.930 Atomic orbital electron populations 1.22891 0.78959 1.03823 1.00831 1.87836 1.21806 1.27265 1.95639 1.21016 0.85858 0.85898 1.02403 1.20329 0.97363 0.97592 0.86030 1.66075 1.06417 1.17520 1.30748 1.29516 0.94736 0.98824 1.01957 1.83697 1.01165 1.62669 1.02519 1.25589 0.99737 1.19467 0.98068 1.16955 0.85936 0.76117 0.83227 1.90783 1.15941 1.51063 1.85467 1.45924 1.10299 1.73897 1.05370 1.20789 0.97591 0.96320 0.79546 0.90897 1.22249 1.00787 0.97322 0.96720 1.21153 0.91318 0.96152 0.89252 1.44561 1.49952 1.17036 1.21610 1.18516 0.92433 1.28010 0.99361 0.92808 1.26034 1.00337 0.96422 0.96953 1.70152 1.37373 1.15386 1.33903 0.86562 0.83634 0.78326 0.79459 1.21793 1.23126 1.17371 1.20757 0.94900 0.86056 0.93009 0.95038 1.21684 0.97465 1.00624 0.98582 1.22207 0.97312 1.02215 0.94276 0.92134 0.94058 0.88519 0.90629 0.90354 0.73279 0.75462 0.91936 0.92822 0.93905 0.96021 0.92946 0.94147 0.90177 0.93493 0.88671 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -11.58 10.69 -148.98 -1.59 -13.18 16 3 C 0.13 3.28 5.75 71.23 0.41 3.69 16 4 C 0.13 3.14 6.42 42.09 0.27 3.41 16 5 N -0.49 -10.33 10.50 -190.40 -2.00 -12.33 16 6 C 0.04 0.54 12.22 130.60 1.60 2.13 16 7 S 0.24 3.08 22.35 -56.49 -1.26 1.82 16 8 C -0.30 -7.06 6.48 23.88 0.15 -6.91 16 9 C 0.59 16.72 7.74 86.45 0.67 17.39 16 10 O -0.55 -19.49 13.93 -4.32 -0.06 -19.56 16 11 N -0.70 -17.37 5.07 -446.35 -2.26 -19.64 16 12 C 0.16 4.86 2.42 45.02 0.11 4.96 16 13 H 0.07 2.44 7.57 -2.39 -0.02 2.42 16 14 C -0.13 -4.69 5.65 30.67 0.17 -4.52 16 15 C 0.15 6.41 4.59 86.36 0.40 6.81 16 16 N -0.61 -27.39 2.47 -675.24 -1.67 -29.05 16 17 C -0.25 -13.65 8.42 84.03 0.71 -12.94 16 18 H 0.05 3.11 6.83 -2.91 -0.02 3.09 16 19 C 0.00 0.08 4.82 84.86 0.41 0.49 16 20 N -0.93 -56.50 13.97 21.65 0.30 -56.20 16 21 Si 0.89 44.97 27.39 68.60 1.88 46.85 16 22 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 23 H -0.30 -15.56 7.11 99.48 0.71 -14.86 16 24 H -0.25 -11.99 5.24 99.48 0.52 -11.47 16 25 C 0.16 5.64 3.49 44.97 0.16 5.80 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 C -0.13 -4.20 8.07 71.98 0.58 -3.62 16 28 C -0.12 -3.32 4.85 30.67 0.15 -3.17 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.22 6.00 -2.38 -0.01 2.21 16 34 H 0.25 0.58 8.06 -2.91 -0.02 0.55 16 35 H 0.41 7.60 7.79 -92.71 -0.72 6.88 16 36 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 2.07 7.02 -2.39 -0.02 2.05 16 39 H 0.02 0.97 6.71 -2.39 -0.02 0.95 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 41 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.64 7.42 -2.38 -0.02 1.63 16 44 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -74.32 372.56 0.47 -73.85 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.10 Total: 12.01 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 7.03 Total: 15.42 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -5.63 Total: -117.22 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.65 Total: -32.73 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.26 Total: 1.82 kcal Total: -74.32 0.47 -73.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947796606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.895 kcal (2) G-P(sol) polarization free energy of solvation -74.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds