Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99648 * 2 1 4 4 C 1.50703 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.30943 * 122.90147 * 269.70361 * 4 3 2 6 6 C 1.29431 * 117.36407 * 179.75482 * 5 4 3 7 7 S 1.70951 * 110.38685 * 0.49502 * 6 5 4 8 8 C 1.35662 * 122.90782 * 89.99875 * 4 3 2 9 9 C 1.46680 * 126.12841 * 0.02562 * 8 4 3 10 10 O 1.21687 * 120.00160 * 0.02562 * 9 8 4 11 11 N 1.34773 * 120.00075 * 180.02562 * 9 8 4 12 12 C 1.46499 * 120.00183 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.45894 * 325.02671 * 12 11 9 14 14 C 1.53036 * 109.46016 * 85.00265 * 12 11 9 15 15 C 1.53187 * 109.31816 * 58.65553 * 14 12 11 16 16 N 1.46927 * 108.77558 * 54.63384 * 15 14 12 17 17 C 1.36939 * 120.63361 * 126.41712 * 16 15 14 18 18 H 1.07997 * 120.00205 * 209.01236 * 17 16 15 19 19 C 1.38810 * 119.99603 * 29.01247 * 17 16 15 20 20 N 1.31626 * 120.00462 * 15.02185 * 19 17 16 21 21 Si 1.86803 * 119.99927 * 195.02347 * 19 17 16 22 22 H 1.48504 * 109.46881 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46964 * 119.99659 * 21 19 17 24 24 H 1.48500 * 109.47443 * 240.00118 * 21 19 17 25 25 C 1.46934 * 118.74053 * 306.39510 * 16 15 14 26 26 H 1.08998 * 109.58444 * 293.82621 * 25 16 15 27 27 C 1.52993 * 109.58641 * 173.39214 * 25 16 15 28 28 C 1.53045 * 109.46085 * 205.06688 * 12 11 9 29 29 H 1.09000 * 109.47286 * 300.00332 * 1 2 3 30 30 H 1.08998 * 109.46867 * 60.00500 * 1 2 3 31 31 H 1.08999 * 109.46593 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47076 * 299.99433 * 3 2 1 33 33 H 1.09000 * 109.47546 * 59.99637 * 3 2 1 34 34 H 1.08001 * 124.80525 * 180.23246 * 6 5 4 35 35 H 0.97005 * 120.00245 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.50151 * 178.60832 * 14 12 11 37 37 H 1.09006 * 109.49951 * 298.66782 * 14 12 11 38 38 H 1.08998 * 109.59541 * 174.42290 * 15 14 12 39 39 H 1.09007 * 109.58733 * 294.71075 * 15 14 12 40 40 H 0.96991 * 120.00443 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.46746 * 60.00462 * 27 25 16 42 42 H 1.09000 * 109.46866 * 179.97438 * 27 25 16 43 43 H 1.08999 * 109.47618 * 299.99984 * 27 25 16 44 44 H 1.09005 * 109.49477 * 61.29932 * 28 12 11 45 45 H 1.09002 * 109.49993 * 181.38909 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2225 1.1359 1.0985 6 6 5.5062 1.0287 0.9730 7 16 5.9423 0.9943 -0.6795 8 6 4.2468 1.1286 -1.1399 9 6 3.7231 1.1707 -2.5094 10 8 2.5251 1.2666 -2.7000 11 7 4.5688 1.1033 -3.5566 12 6 4.0458 1.1460 -4.9244 13 1 3.0853 0.6322 -4.9621 14 6 3.8620 2.6031 -5.3547 15 6 5.2071 3.3308 -5.2677 16 7 6.1983 2.5886 -6.0586 17 6 6.9301 3.2189 -7.0294 18 1 7.2816 2.6639 -7.8865 19 6 7.2198 4.5713 -6.9117 20 7 7.0596 5.1807 -5.7561 21 14 7.8372 5.5266 -8.3936 22 1 7.9299 4.6180 -9.5646 23 1 6.8932 6.6316 -8.6985 24 1 9.1788 6.0895 -8.0959 25 6 6.3899 1.1572 -5.7877 26 1 6.8096 1.0271 -4.7902 27 6 7.3392 0.5608 -6.8287 28 6 5.0314 0.4540 -5.8689 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8465 0.8899 34 1 6.2035 0.9734 1.7959 35 1 5.5239 1.0273 -3.4047 36 1 3.4963 2.6360 -6.3810 37 1 3.1418 3.0888 -4.6962 38 1 5.1033 4.3399 -5.6662 39 1 5.5294 3.3801 -4.2275 40 1 7.2625 6.1256 -5.6738 41 1 8.3011 1.0710 -6.7778 42 1 7.4804 -0.5008 -6.6258 43 1 6.9130 0.6873 -7.8239 44 1 5.1440 -0.5900 -5.5760 45 1 4.6547 0.5070 -6.8904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947796607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -7.323356 kcal Electronic energy + Delta-G solvation = -28192.126881 eV Core-core repulsion = 24337.652402 eV Total energy + Delta-G solvation = -3854.474479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50607 -39.41551 -37.64212 -37.47374 -34.38109 -32.42801 -31.78214 -31.06174 -29.77017 -28.02678 -26.47155 -26.18022 -25.00334 -24.62762 -22.55724 -21.81653 -20.66604 -19.53107 -18.96924 -18.45097 -16.96258 -16.54990 -16.37752 -15.82639 -15.48522 -15.32378 -15.06714 -14.94685 -14.57425 -14.18258 -13.90962 -13.84321 -13.71298 -13.18004 -13.01351 -12.85037 -12.50991 -12.35751 -11.88757 -11.60854 -11.48602 -11.33443 -11.25145 -11.04783 -10.72172 -10.68157 -10.43285 -10.21686 -10.14159 -10.11748 -9.86562 -9.73655 -9.65091 -9.45531 -9.33867 -9.13608 -8.70171 -8.49904 -6.68307 -5.81237 -3.25630 0.12348 1.05776 1.44036 2.27714 3.18653 3.30265 3.34312 3.42852 3.43913 3.78129 4.24188 4.45337 4.81111 4.85011 5.00152 5.23785 5.27188 5.31995 5.34303 5.35715 5.45338 5.56615 5.58654 5.61500 5.62461 5.89347 5.94537 6.05410 6.17324 6.26462 6.31198 6.40136 6.51249 6.56556 6.70059 6.88179 6.95327 7.00323 7.08074 7.33334 7.42496 7.64869 7.67733 7.79065 8.30208 8.42273 9.18143 9.81524 10.37711 11.26821 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.003270 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.145238 B = 8560.744813 C = 8953.863918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.130 3.870 4 C 0.132 3.868 5 N -0.464 5.464 6 C 0.024 3.976 7 S 0.186 5.814 8 C -0.263 4.263 9 C 0.594 3.406 10 O -0.525 6.525 11 N -0.704 5.704 12 C 0.155 3.845 13 H 0.077 0.923 14 C -0.154 4.154 15 C 0.175 3.825 16 N -0.587 5.587 17 C -0.250 4.250 18 H 0.071 0.929 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.168 3.832 26 H 0.018 0.982 27 C -0.137 4.137 28 C -0.140 4.140 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.207 0.793 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.016 0.984 40 H 0.252 0.748 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -10.132 10.849 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.052 3.948 4 C -0.007 4.007 5 N -0.178 5.178 6 C -0.271 4.271 7 S 0.442 5.558 8 C -0.388 4.388 9 C 0.378 3.622 10 O -0.404 6.404 11 N -0.355 5.355 12 C 0.051 3.949 13 H 0.095 0.905 14 C -0.194 4.194 15 C 0.049 3.951 16 N -0.310 5.310 17 C -0.380 4.380 18 H 0.088 0.912 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.061 3.939 26 H 0.035 0.965 27 C -0.194 4.194 28 C -0.180 4.180 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.223 0.777 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.034 0.966 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.225 -10.115 10.734 15.647 hybrid contribution -0.092 0.933 -0.382 1.013 sum -5.317 -9.182 10.351 14.823 Atomic orbital electron populations 1.22707 0.80631 1.02611 1.00117 1.87877 1.19844 1.26658 1.95515 1.21013 0.85200 0.86027 1.02592 1.20177 0.97089 0.98130 0.85297 1.66018 1.05010 1.15619 1.31172 1.28671 0.95196 1.02542 1.00688 1.84202 1.05144 1.63582 1.02881 1.25756 0.96682 1.16825 0.99539 1.16613 0.86260 0.76982 0.82300 1.90754 1.14449 1.50385 1.84806 1.46074 1.10032 1.73176 1.06241 1.20970 0.97011 0.97750 0.79137 0.90532 1.22574 1.01253 0.94966 1.00647 1.20721 0.84133 0.96226 0.94025 1.44150 1.42023 1.03192 1.41650 1.19213 1.28039 0.92368 0.98333 0.91161 1.25078 0.99711 0.98506 0.96260 1.70018 1.52367 1.10260 1.22058 0.86263 0.78067 0.80084 0.82579 1.20278 1.21650 1.21805 1.20386 0.91571 0.86318 0.95670 0.96467 1.21801 1.00426 0.97849 0.99366 1.22387 0.97984 0.98116 0.99478 0.94249 0.93527 0.89737 0.88774 0.91976 0.77655 0.76512 0.91559 0.92714 0.89404 0.96569 0.93755 0.91869 0.94265 0.92611 0.92485 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.60 10.69 -35.23 -0.38 -5.98 16 3 C 0.13 1.86 5.75 36.01 0.21 2.07 16 4 C 0.13 1.97 6.42 -83.89 -0.54 1.43 16 5 N -0.46 -6.36 10.50 -11.53 -0.12 -6.48 16 6 C 0.02 0.26 12.22 51.75 0.63 0.89 16 7 S 0.19 2.15 22.35 -107.50 -2.40 -0.26 16 8 C -0.26 -3.96 6.48 -37.10 -0.24 -4.20 16 9 C 0.59 10.04 7.74 -12.85 -0.10 9.94 16 10 O -0.53 -9.86 13.93 5.20 0.07 -9.79 16 11 N -0.70 -11.50 4.26 -55.07 -0.23 -11.74 16 12 C 0.15 2.63 2.78 -67.89 -0.19 2.44 16 13 H 0.08 1.29 7.57 -51.93 -0.39 0.90 16 14 C -0.15 -2.97 5.77 -26.62 -0.15 -3.13 16 15 C 0.17 4.00 5.03 -3.71 -0.02 3.99 16 16 N -0.59 -13.56 2.99 -164.78 -0.49 -14.05 16 17 C -0.25 -6.40 8.60 -15.06 -0.13 -6.53 16 18 H 0.07 1.76 6.21 -52.49 -0.33 1.44 16 19 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 20 N -0.90 -25.28 11.14 55.49 0.62 -24.66 16 21 Si 0.90 21.08 29.58 -169.99 -5.03 16.06 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.17 3.16 3.20 -67.60 -0.22 2.94 16 26 H 0.02 0.34 6.64 -51.93 -0.34 -0.01 16 27 C -0.14 -2.38 7.94 37.15 0.30 -2.08 16 28 C -0.14 -2.26 5.07 -26.61 -0.13 -2.40 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.43 6.00 -51.93 -0.31 1.12 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.21 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.40 6.27 6.05 -40.82 -0.25 6.02 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 39 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.06 1.19 7.62 -51.93 -0.40 0.80 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -31.16 370.72 -8.42 -39.58 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.48 Total: 4.87 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 0.44 Total: 6.86 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.23 Total: -56.93 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.30 Total: -15.77 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.40 Total: -0.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.16 -8.42 -39.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947796607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.261 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds