Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99808 * 2 1 4 4 C 1.50703 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.29433 * 124.80259 * 89.96245 * 4 3 2 6 6 C 1.30945 * 117.35986 * 179.77126 * 5 4 3 7 7 C 1.35661 * 114.19124 * 0.47959 * 6 5 4 8 8 C 1.46683 * 126.12971 * 179.82979 * 7 6 5 9 9 O 1.21686 * 119.99753 * 359.71194 * 8 7 6 10 10 N 1.34769 * 120.00387 * 179.71209 * 8 7 6 11 11 C 1.46504 * 120.00573 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.45260 * 34.97224 * 11 10 8 13 13 C 1.53043 * 109.45718 * 275.00202 * 11 10 8 14 14 C 1.53193 * 109.30963 * 178.62629 * 13 11 10 15 15 N 1.46924 * 108.77570 * 54.63298 * 14 13 11 16 16 C 1.36942 * 120.62759 * 126.37031 * 15 14 13 17 17 H 1.08000 * 119.99690 * 209.85042 * 16 15 14 18 18 C 1.38802 * 119.99965 * 29.84810 * 16 15 14 19 19 N 1.31622 * 120.00558 * 15.49936 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 195.49351 * 18 16 15 21 21 H 1.48504 * 109.47460 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47507 * 300.00635 * 20 18 16 23 23 H 1.48508 * 109.47038 * 60.00353 * 20 18 16 24 24 C 1.46923 * 118.74187 * 306.64404 * 15 14 13 25 25 H 1.09004 * 109.58631 * 293.57127 * 24 15 14 26 26 C 1.52996 * 109.58910 * 173.14615 * 24 15 14 27 27 C 1.52760 * 109.00965 * 53.30656 * 24 15 14 28 28 S 1.70952 * 124.80313 * 270.00477 * 4 3 2 29 29 H 1.09004 * 109.46906 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46832 * 299.99875 * 1 2 3 31 31 H 1.08999 * 109.47526 * 59.99616 * 1 2 3 32 32 H 1.08997 * 109.47101 * 60.00367 * 3 2 1 33 33 H 1.08997 * 109.47491 * 300.00708 * 3 2 1 34 34 H 1.08000 * 122.90264 * 180.30678 * 6 5 4 35 35 H 0.97009 * 119.99697 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.49796 * 58.67194 * 13 11 10 37 37 H 1.08994 * 109.49791 * 298.57660 * 13 11 10 38 38 H 1.08998 * 109.58588 * 294.84653 * 14 13 11 39 39 H 1.08998 * 109.58589 * 174.42141 * 14 13 11 40 40 H 0.96997 * 120.00640 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47177 * 59.99973 * 26 24 15 42 42 H 1.08998 * 109.46969 * 180.02562 * 26 24 15 43 43 H 1.08997 * 109.47304 * 299.99802 * 26 24 15 44 44 H 1.08997 * 109.56594 * 185.55354 * 27 24 15 45 45 H 1.09005 * 109.35800 * 65.49870 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2485 1.1278 -1.0637 6 6 5.5433 1.0300 -0.8947 7 6 5.9331 0.9937 0.4042 8 6 7.3127 0.8843 0.8903 9 8 8.2331 0.8112 0.0977 10 7 7.5610 0.8647 2.2148 11 6 8.9388 0.7549 2.7004 12 1 9.6053 1.2926 2.0261 13 6 9.3456 -0.7196 2.7509 14 6 10.7978 -0.8285 3.2263 15 7 10.9302 -0.1217 4.5076 16 6 11.4596 -0.7533 5.6013 17 1 11.1422 -0.4707 6.5941 18 6 12.4041 -1.7566 5.4337 19 7 13.0157 -1.8983 4.2769 20 14 12.8072 -2.9058 6.8502 21 1 13.8401 -3.8812 6.4177 22 1 13.3224 -2.1159 7.9973 23 1 11.5799 -3.6335 7.2618 24 6 10.4783 1.2735 4.5948 25 1 11.1128 1.9028 3.9706 26 6 10.5522 1.7468 6.0478 27 6 9.0348 1.3607 4.1025 28 16 4.4858 1.1092 1.4027 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 6.2403 0.9797 -1.7181 35 1 6.8273 0.9233 2.8467 36 1 9.2545 -1.1564 1.7565 37 1 8.6950 -1.2529 3.4439 38 1 11.4589 -0.3742 2.4884 39 1 11.0611 -1.8779 3.3589 40 1 13.6760 -2.5991 4.1599 41 1 11.5810 1.6765 6.4009 42 1 10.2162 2.7818 6.1103 43 1 9.9117 1.1192 6.6674 44 1 8.7226 2.4045 4.0701 45 1 8.3871 0.8077 4.7829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948085842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = -12.347555 kcal Electronic energy + Delta-G solvation = -26795.918667 eV Core-core repulsion = 22941.226322 eV Total energy + Delta-G solvation = -3854.692345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.41050 -39.47982 -38.24338 -37.60393 -34.66854 -32.51408 -32.04455 -31.25187 -29.73242 -28.60797 -26.69070 -26.35905 -24.97960 -24.25343 -22.59233 -21.76570 -20.38843 -20.05714 -19.22600 -18.70240 -17.15923 -17.08909 -16.36141 -16.27562 -15.90993 -15.47603 -15.20183 -15.08570 -14.68103 -14.15564 -14.00803 -13.90058 -13.64738 -13.32048 -13.15157 -12.87806 -12.81598 -12.71171 -11.97633 -11.88528 -11.61817 -11.25038 -11.13450 -10.95493 -10.91164 -10.66862 -10.42464 -10.35503 -10.23179 -10.16575 -10.06043 -9.95506 -9.81352 -9.75747 -9.42443 -9.33208 -8.79813 -8.43136 -6.64181 -5.77079 -3.21443 -0.11875 0.80652 1.23820 2.14746 3.04802 3.15528 3.25741 3.38557 3.44900 3.45131 3.87568 4.38346 4.49106 4.67667 4.76657 4.81704 4.85058 4.91266 5.03419 5.20000 5.24419 5.34319 5.42067 5.54391 5.73758 5.78238 5.95506 6.13573 6.17965 6.29437 6.35361 6.40161 6.47410 6.47872 6.60609 6.76960 6.81735 7.01305 7.08323 7.25338 7.36563 7.51883 7.68239 7.82463 8.16112 8.47231 9.22358 9.85887 10.43103 11.31795 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.002272 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.296505 B =12319.691814 C =12504.748632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.138 3.862 4 C 0.043 3.957 5 N -0.458 5.458 6 C 0.112 3.888 7 C -0.276 4.276 8 C 0.591 3.409 9 O -0.520 6.520 10 N -0.716 5.716 11 C 0.151 3.849 12 H 0.086 0.914 13 C -0.148 4.148 14 C 0.176 3.824 15 N -0.587 5.587 16 C -0.253 4.253 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.291 1.291 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.172 3.828 25 H 0.027 0.973 26 C -0.135 4.135 27 C -0.135 4.135 28 S 0.193 5.807 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.192 0.808 35 H 0.392 0.608 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.089 0.911 40 H 0.254 0.746 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.125 8.583 -5.689 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.232 4.232 5 N -0.174 5.174 6 C -0.045 4.045 7 C -0.401 4.401 8 C 0.374 3.626 9 O -0.398 6.398 10 N -0.366 5.366 11 C 0.048 3.952 12 H 0.104 0.896 13 C -0.188 4.188 14 C 0.049 3.951 15 N -0.310 5.310 16 C -0.382 4.382 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.217 1.217 22 H -0.209 1.209 23 H -0.211 1.211 24 C 0.064 3.936 25 H 0.045 0.955 26 C -0.193 4.193 27 C -0.175 4.175 28 S 0.449 5.551 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.209 0.791 35 H 0.226 0.774 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.701 8.279 -5.682 25.740 hybrid contribution 0.220 -0.533 0.165 0.600 sum -23.481 7.746 -5.516 25.333 Atomic orbital electron populations 1.22828 0.79767 1.03503 1.00402 1.87980 1.20489 1.26055 1.95537 1.20825 0.84285 0.86293 1.02761 1.26903 1.00608 1.04016 0.91690 1.66157 1.04967 1.15040 1.31196 1.22203 0.90486 0.96114 0.95747 1.26085 0.98510 1.17551 0.97939 1.16710 0.85571 0.77203 0.83093 1.90868 1.44035 1.49776 1.55091 1.46278 1.10731 1.73891 1.05655 1.21151 0.80168 0.98234 0.95627 0.89631 1.22597 1.01827 0.94060 1.00347 1.20738 0.88628 0.99525 0.86174 1.44141 1.71597 1.06273 1.09026 1.19099 1.16564 1.15613 0.86947 0.91318 1.25110 0.96227 1.01410 0.96806 1.70008 1.27018 1.33731 1.23795 0.86402 0.77646 0.80889 0.81980 1.21693 1.20911 1.21091 1.20263 0.90629 0.87874 0.94826 0.95507 1.21791 1.02572 0.98145 0.96768 1.22335 1.01191 0.99158 0.94798 1.83845 0.96623 1.63771 1.10842 0.88981 0.93569 0.93511 0.90572 0.89716 0.79140 0.77411 0.92744 0.92560 0.96024 0.89294 0.93567 0.91775 0.94304 0.92787 0.92543 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.36 10.69 -35.23 -0.38 -3.73 16 3 C 0.14 1.00 6.51 36.01 0.23 1.24 16 4 C 0.04 0.43 7.02 -13.29 -0.09 0.34 16 5 N -0.46 -5.55 10.51 -11.50 -0.12 -5.67 16 6 C 0.11 1.40 11.09 -18.85 -0.21 1.19 16 7 C -0.28 -3.50 6.48 -37.10 -0.24 -3.74 16 8 C 0.59 9.11 7.75 -12.85 -0.10 9.01 16 9 O -0.52 -9.88 16.53 5.20 0.09 -9.79 16 10 N -0.72 -10.29 5.07 -55.07 -0.28 -10.57 16 11 C 0.15 2.60 2.42 -67.89 -0.16 2.44 16 12 H 0.09 1.64 7.57 -51.93 -0.39 1.25 16 13 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 14 C 0.18 4.21 5.29 -3.71 -0.02 4.19 16 15 N -0.59 -14.18 2.99 -165.04 -0.49 -14.68 16 16 C -0.25 -6.65 8.57 -15.06 -0.13 -6.78 16 17 H 0.07 1.75 6.23 -52.49 -0.33 1.43 16 18 C 0.00 0.09 4.94 -17.43 -0.09 0.01 16 19 N -0.90 -26.04 11.23 55.49 0.62 -25.41 16 20 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.17 3.43 3.48 -67.83 -0.24 3.19 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 C -0.14 -2.43 7.94 37.16 0.29 -2.14 16 27 C -0.13 -2.21 4.81 -26.83 -0.13 -2.33 16 28 S 0.19 1.83 22.31 -107.50 -2.40 -0.57 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.39 4.61 7.79 -40.82 -0.32 4.29 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -32.42 380.06 -8.95 -41.37 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.77 Total: 2.12 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 0.08 Total: 4.79 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.27 Total: -56.34 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.29 Total: -13.53 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.40 Total: -0.57 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.42 -8.95 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948085842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.019 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds