Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00141 * 2 1 4 4 C 1.50704 * 109.46942 * 180.02562 * 3 2 1 5 5 N 1.28645 * 124.71799 * 90.00320 * 4 3 2 6 6 C 1.33559 * 115.76683 * 180.02562 * 5 4 3 7 7 C 1.47270 * 123.14488 * 180.02562 * 6 5 4 8 8 O 1.21633 * 120.00068 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99801 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00215 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.45772 * 325.03101 * 10 9 7 12 12 C 1.53036 * 109.45957 * 84.99970 * 10 9 7 13 13 C 1.53188 * 109.31280 * 58.66076 * 12 10 9 14 14 N 1.46926 * 108.77858 * 54.62906 * 13 12 10 15 15 C 1.36945 * 120.63094 * 126.41241 * 14 13 12 16 16 H 1.07997 * 120.00070 * 209.02318 * 15 14 13 17 17 C 1.38811 * 119.99380 * 29.02043 * 15 14 13 18 18 N 1.31614 * 120.00263 * 15.01672 * 17 15 14 19 19 Si 1.86802 * 119.99539 * 195.00901 * 17 15 14 20 20 H 1.48510 * 109.46978 * 90.00339 * 19 17 15 21 21 H 1.48499 * 109.47310 * 210.00191 * 19 17 15 22 22 H 1.48503 * 109.47365 * 330.00784 * 19 17 15 23 23 C 1.46924 * 118.74035 * 306.39875 * 14 13 12 24 24 H 1.09001 * 109.58388 * 293.81460 * 23 14 13 25 25 C 1.53005 * 109.58653 * 173.39158 * 23 14 13 26 26 C 1.53042 * 109.46377 * 205.07407 * 10 9 7 27 27 C 1.35207 * 113.71474 * 0.02562 * 6 5 4 28 28 S 1.70771 * 124.72102 * 269.70192 * 4 3 2 29 29 H 1.09004 * 109.47102 * 299.99597 * 1 2 3 30 30 H 1.08999 * 109.47442 * 59.99315 * 1 2 3 31 31 H 1.08995 * 109.47645 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46906 * 60.00750 * 3 2 1 33 33 H 1.08994 * 109.47577 * 300.00141 * 3 2 1 34 34 H 0.97006 * 120.00174 * 0.02562 * 9 7 6 35 35 H 1.09006 * 109.49754 * 178.60890 * 12 10 9 36 36 H 1.08995 * 109.49857 * 298.70485 * 12 10 9 37 37 H 1.09000 * 109.59278 * 174.41867 * 13 12 10 38 38 H 1.09003 * 109.58846 * 294.70385 * 13 12 10 39 39 H 0.97005 * 119.99524 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.46924 * 60.00084 * 25 23 14 41 41 H 1.09004 * 109.46766 * 179.97438 * 25 23 14 42 42 H 1.08998 * 109.47087 * 299.99765 * 25 23 14 43 43 H 1.08998 * 109.49710 * 61.28816 * 26 10 9 44 44 H 1.08999 * 109.49806 * 181.39380 * 26 10 9 45 45 H 1.08006 * 125.58460 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2425 1.1287 -1.0584 6 6 5.5578 1.0239 -0.8511 7 6 6.5415 0.9466 -1.9443 8 8 7.7272 0.8516 -1.6899 9 7 6.1281 0.9812 -3.2266 10 6 7.1065 0.9038 -4.3141 11 1 8.0194 1.4211 -4.0187 12 6 7.4250 -0.5636 -4.6099 13 6 6.1344 -1.2952 -4.9914 14 7 5.4966 -0.5798 -6.1050 15 6 5.1586 -1.2401 -7.2561 16 1 5.1408 -0.7104 -8.1971 17 6 4.8388 -2.5902 -7.2134 18 7 4.5708 -3.1668 -6.0611 19 14 4.7888 -3.5885 -8.7915 20 1 6.1305 -4.1690 -9.0527 21 1 3.7943 -4.6826 -8.6538 22 1 4.4020 -2.7074 -9.9226 23 6 5.2282 0.8574 -5.9600 24 1 4.4792 1.0127 -5.1834 25 6 4.7184 1.4205 -7.2882 26 6 6.5291 1.5650 -5.5677 27 6 5.9017 0.9953 0.4562 28 16 4.4833 1.1165 1.4026 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 5.1825 1.0574 -3.4295 35 1 8.1343 -0.6227 -5.4355 36 1 7.8580 -1.0276 -3.7237 37 1 6.3691 -2.3144 -5.2985 38 1 5.4603 -1.3177 -4.1351 39 1 4.3469 -4.1102 -6.0314 40 1 3.7997 0.9071 -7.5718 41 1 4.5195 2.4866 -7.1783 42 1 5.4726 1.2690 -8.0604 43 1 6.3242 2.6158 -5.3632 44 1 7.2468 1.4858 -6.3842 45 1 6.9081 0.9145 0.8397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948085907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -11.442329 kcal Electronic energy + Delta-G solvation = -27914.604146 eV Core-core repulsion = 24059.951054 eV Total energy + Delta-G solvation = -3854.653091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.51966 -39.09556 -38.00075 -37.35329 -34.25382 -32.29929 -31.81705 -31.07668 -29.58859 -28.34856 -26.45955 -26.23241 -25.28358 -24.57345 -22.05881 -21.59327 -20.56977 -19.93356 -18.97258 -18.42170 -16.84810 -16.65777 -16.19542 -16.08523 -15.85779 -15.34934 -15.06561 -14.92132 -14.28435 -14.09716 -13.81007 -13.69733 -13.61201 -13.07994 -12.91281 -12.69520 -12.47708 -12.40818 -12.09711 -11.77365 -11.69166 -11.37970 -11.15511 -10.96018 -10.65554 -10.58177 -10.35406 -10.10400 -10.08838 -10.01474 -9.98360 -9.81308 -9.76892 -9.62157 -9.24500 -9.11289 -8.52806 -8.40038 -6.57620 -5.71426 -3.15938 0.35520 1.05329 1.45027 1.91818 3.30744 3.40790 3.47543 3.48499 3.59069 3.62783 4.08919 4.53037 4.60268 4.88897 5.02963 5.07671 5.10373 5.17991 5.23386 5.37675 5.41057 5.45187 5.48343 5.66858 5.72168 5.79004 6.04295 6.17523 6.29642 6.35765 6.42356 6.49259 6.61963 6.67990 6.77311 6.82308 6.99942 7.06697 7.11204 7.31995 7.45757 7.77241 7.87072 7.93621 8.49880 8.51896 9.27665 9.91453 10.48381 11.36441 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.003550 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.267803 B = 7884.964923 C = 9175.204743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.141 3.859 4 C 0.018 3.982 5 N -0.418 5.418 6 C 0.017 3.983 7 C 0.591 3.409 8 O -0.545 6.545 9 N -0.691 5.691 10 C 0.152 3.848 11 H 0.074 0.926 12 C -0.153 4.153 13 C 0.175 3.825 14 N -0.586 5.586 15 C -0.250 4.250 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.280 1.280 23 C 0.167 3.833 24 H 0.022 0.978 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.223 4.223 28 S 0.222 5.778 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.411 0.589 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 12.000 15.375 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C 0.062 3.938 4 C -0.262 4.262 5 N -0.135 5.135 6 C -0.118 4.118 7 C 0.374 3.626 8 O -0.424 6.424 9 N -0.341 5.341 10 C 0.048 3.952 11 H 0.092 0.908 12 C -0.194 4.194 13 C 0.049 3.951 14 N -0.309 5.309 15 C -0.380 4.380 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.730 3.270 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.060 3.940 24 H 0.039 0.961 25 C -0.193 4.193 26 C -0.178 4.178 27 C -0.366 4.366 28 S 0.479 5.521 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.182 11.636 16.048 20.259 hybrid contribution -0.008 -0.579 -1.566 1.670 sum -4.190 11.057 14.482 18.696 Atomic orbital electron populations 1.22809 0.79923 1.03484 1.00211 1.87998 1.20347 1.26028 1.95480 1.20759 0.84284 0.86313 1.02488 1.26585 1.00744 1.06951 0.91888 1.66883 1.03227 1.12163 1.31209 1.20555 0.89908 1.07608 0.93774 1.17004 0.86468 0.76992 0.82166 1.90778 1.16118 1.51506 1.83955 1.46003 1.12101 1.71421 1.04621 1.20968 0.90977 0.97657 0.85551 0.90825 1.22564 1.01547 0.94945 1.00306 1.20719 0.88686 0.96388 0.89301 1.44123 1.68452 1.02630 1.15739 1.19185 1.40107 0.92352 0.86316 0.91236 1.25083 0.99506 0.98622 0.96385 1.70030 1.49788 1.11187 1.23609 0.86329 0.77330 0.80042 0.83269 1.21556 1.21885 1.20502 1.20393 0.92184 0.86217 0.95217 0.96083 1.21795 1.01877 0.97861 0.97803 1.22363 1.00652 0.98176 0.96586 1.26662 1.06064 1.06941 0.96883 1.82672 0.94871 1.63388 1.11177 0.93873 0.93416 0.89036 0.90892 0.89796 0.75185 0.91693 0.92813 0.89535 0.96344 0.93757 0.91947 0.94358 0.92713 0.92603 0.90558 0.79173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.55 10.69 -35.23 -0.38 -4.93 16 3 C 0.14 1.40 6.51 36.01 0.23 1.64 16 4 C 0.02 0.22 6.97 -13.61 -0.09 0.13 16 5 N -0.42 -6.50 10.12 -8.51 -0.09 -6.59 16 6 C 0.02 0.27 6.70 -84.52 -0.57 -0.29 16 7 C 0.59 10.84 7.76 -12.59 -0.10 10.75 16 8 O -0.55 -11.00 16.37 5.25 0.09 -10.91 16 9 N -0.69 -12.64 4.26 -54.89 -0.23 -12.88 16 10 C 0.15 2.81 2.78 -67.89 -0.19 2.62 16 11 H 0.07 1.33 7.57 -51.93 -0.39 0.94 16 12 C -0.15 -3.20 5.77 -26.62 -0.15 -3.35 16 13 C 0.17 4.31 5.03 -3.71 -0.02 4.29 16 14 N -0.59 -14.42 2.99 -164.77 -0.49 -14.92 16 15 C -0.25 -6.71 8.60 -15.06 -0.13 -6.84 16 16 H 0.07 1.82 6.21 -52.49 -0.33 1.49 16 17 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16 18 N -0.90 -26.52 11.14 55.49 0.62 -25.90 16 19 Si 0.90 21.85 29.58 -169.99 -5.03 16.83 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.17 3.41 3.20 -67.60 -0.22 3.19 16 24 H 0.02 0.46 6.64 -51.93 -0.34 0.11 16 25 C -0.14 -2.53 7.94 37.16 0.30 -2.23 16 26 C -0.14 -2.41 5.07 -26.61 -0.13 -2.55 16 27 C -0.22 -2.85 10.62 29.65 0.31 -2.53 16 28 S 0.22 2.16 22.92 -107.50 -2.46 -0.30 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.41 7.63 6.39 -40.82 -0.26 7.37 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 38 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.19 2.15 8.03 -52.48 -0.42 1.73 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -32.99 375.75 -8.65 -41.64 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.61 Total: 6.13 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 0.27 Total: 6.17 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.19 Total: -60.29 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.29 Total: -15.84 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.46 Total: -0.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.99 -8.65 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948085907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.203 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds