Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00141 * 2 1 4 4 C 1.50704 * 109.46942 * 180.02562 * 3 2 1 5 5 N 1.28645 * 124.71799 * 90.00320 * 4 3 2 6 6 C 1.33559 * 115.76683 * 180.02562 * 5 4 3 7 7 C 1.47270 * 123.14488 * 180.02562 * 6 5 4 8 8 O 1.21633 * 120.00068 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99801 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00215 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.45772 * 325.03101 * 10 9 7 12 12 C 1.53036 * 109.45957 * 84.99970 * 10 9 7 13 13 C 1.53188 * 109.31280 * 58.66076 * 12 10 9 14 14 N 1.46926 * 108.77858 * 54.62906 * 13 12 10 15 15 C 1.36945 * 120.63094 * 126.41241 * 14 13 12 16 16 H 1.07997 * 120.00070 * 209.02318 * 15 14 13 17 17 C 1.38811 * 119.99380 * 29.02043 * 15 14 13 18 18 N 1.31614 * 120.00263 * 15.01672 * 17 15 14 19 19 Si 1.86802 * 119.99539 * 195.00901 * 17 15 14 20 20 H 1.48510 * 109.46978 * 90.00339 * 19 17 15 21 21 H 1.48499 * 109.47310 * 210.00191 * 19 17 15 22 22 H 1.48503 * 109.47365 * 330.00784 * 19 17 15 23 23 C 1.46924 * 118.74035 * 306.39875 * 14 13 12 24 24 H 1.09001 * 109.58388 * 293.81460 * 23 14 13 25 25 C 1.53005 * 109.58653 * 173.39158 * 23 14 13 26 26 C 1.53042 * 109.46377 * 205.07407 * 10 9 7 27 27 C 1.35207 * 113.71474 * 0.02562 * 6 5 4 28 28 S 1.70771 * 124.72102 * 269.70192 * 4 3 2 29 29 H 1.09004 * 109.47102 * 299.99597 * 1 2 3 30 30 H 1.08999 * 109.47442 * 59.99315 * 1 2 3 31 31 H 1.08995 * 109.47645 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46906 * 60.00750 * 3 2 1 33 33 H 1.08994 * 109.47577 * 300.00141 * 3 2 1 34 34 H 0.97006 * 120.00174 * 0.02562 * 9 7 6 35 35 H 1.09006 * 109.49754 * 178.60890 * 12 10 9 36 36 H 1.08995 * 109.49857 * 298.70485 * 12 10 9 37 37 H 1.09000 * 109.59278 * 174.41867 * 13 12 10 38 38 H 1.09003 * 109.58846 * 294.70385 * 13 12 10 39 39 H 0.97005 * 119.99524 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.46924 * 60.00084 * 25 23 14 41 41 H 1.09004 * 109.46766 * 179.97438 * 25 23 14 42 42 H 1.08998 * 109.47087 * 299.99765 * 25 23 14 43 43 H 1.08998 * 109.49710 * 61.28816 * 26 10 9 44 44 H 1.08999 * 109.49806 * 181.39380 * 26 10 9 45 45 H 1.08006 * 125.58460 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2425 1.1287 -1.0584 6 6 5.5578 1.0239 -0.8511 7 6 6.5415 0.9466 -1.9443 8 8 7.7272 0.8516 -1.6899 9 7 6.1281 0.9812 -3.2266 10 6 7.1065 0.9038 -4.3141 11 1 8.0194 1.4211 -4.0187 12 6 7.4250 -0.5636 -4.6099 13 6 6.1344 -1.2952 -4.9914 14 7 5.4966 -0.5798 -6.1050 15 6 5.1586 -1.2401 -7.2561 16 1 5.1408 -0.7104 -8.1971 17 6 4.8388 -2.5902 -7.2134 18 7 4.5708 -3.1668 -6.0611 19 14 4.7888 -3.5885 -8.7915 20 1 6.1305 -4.1690 -9.0527 21 1 3.7943 -4.6826 -8.6538 22 1 4.4020 -2.7074 -9.9226 23 6 5.2282 0.8574 -5.9600 24 1 4.4792 1.0127 -5.1834 25 6 4.7184 1.4205 -7.2882 26 6 6.5291 1.5650 -5.5677 27 6 5.9017 0.9953 0.4562 28 16 4.4833 1.1165 1.4026 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 5.1825 1.0574 -3.4295 35 1 8.1343 -0.6227 -5.4355 36 1 7.8580 -1.0276 -3.7237 37 1 6.3691 -2.3144 -5.2985 38 1 5.4603 -1.3177 -4.1351 39 1 4.3469 -4.1102 -6.0314 40 1 3.7997 0.9071 -7.5718 41 1 4.5195 2.4866 -7.1783 42 1 5.4726 1.2690 -8.0604 43 1 6.3242 2.6158 -5.3632 44 1 7.2468 1.4858 -6.3842 45 1 6.9081 0.9145 0.8397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948085907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -34.837322 kcal Electronic energy + Delta-G solvation = -27915.618629 eV Core-core repulsion = 24059.951054 eV Total energy + Delta-G solvation = -3855.667574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72445 -40.41452 -39.13217 -38.60298 -35.95382 -34.11683 -33.02415 -32.53645 -31.36888 -29.19805 -28.09087 -27.12109 -26.83864 -25.94390 -23.78894 -22.81563 -22.23755 -21.06197 -20.36418 -19.82209 -18.31182 -17.61784 -17.57352 -17.17921 -17.01420 -16.68081 -16.48873 -16.24331 -15.82291 -15.61023 -15.40578 -15.11068 -14.88019 -14.66427 -14.30842 -14.12411 -13.68670 -13.36958 -13.25187 -13.16056 -12.99663 -12.86686 -12.68606 -12.50049 -12.36975 -12.33080 -12.17012 -11.97797 -11.72993 -11.44159 -11.27212 -11.02205 -10.95428 -10.77956 -10.68029 -10.51760 -10.20429 -9.89530 -8.61059 -7.81704 -5.28404 -0.61512 0.18068 0.50075 0.78280 1.46563 1.48318 1.56366 2.13237 2.29880 2.53021 2.67408 3.20061 3.33214 3.60472 3.71317 3.88705 4.05046 4.06078 4.16852 4.17058 4.19012 4.40841 4.41456 4.52502 4.58314 4.60276 4.64795 4.73254 4.76524 4.90126 4.90786 4.95058 5.01552 5.08159 5.14667 5.38721 5.50935 5.51770 5.55758 5.72744 5.75099 6.09645 6.26498 6.43867 6.57496 7.09051 7.18560 7.90932 8.43417 9.24667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.003550 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.267803 B = 7884.964923 C = 9175.204743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.138 3.862 4 C -0.007 4.007 5 N -0.455 5.455 6 C -0.018 4.018 7 C 0.587 3.413 8 O -0.572 6.572 9 N -0.693 5.693 10 C 0.156 3.844 11 H 0.085 0.915 12 C -0.141 4.141 13 C 0.189 3.811 14 N -0.600 5.600 15 C -0.247 4.247 16 H 0.080 0.920 17 C -0.056 4.056 18 N -0.940 5.940 19 Si 0.962 3.038 20 H -0.289 1.289 21 H -0.300 1.300 22 H -0.264 1.264 23 C 0.159 3.841 24 H 0.013 0.987 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.231 4.231 28 S 0.333 5.667 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.048 0.952 38 H -0.012 1.012 39 H 0.245 0.755 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 14.227 16.285 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.335 6.335 3 C 0.058 3.942 4 C -0.285 4.285 5 N -0.173 5.173 6 C -0.154 4.154 7 C 0.372 3.628 8 O -0.452 6.452 9 N -0.342 5.342 10 C 0.052 3.948 11 H 0.103 0.897 12 C -0.181 4.181 13 C 0.063 3.937 14 N -0.324 5.324 15 C -0.378 4.378 16 H 0.097 0.903 17 C -0.250 4.250 18 N -0.587 5.587 19 Si 0.791 3.209 20 H -0.217 1.217 21 H -0.227 1.227 22 H -0.189 1.189 23 C 0.053 3.947 24 H 0.031 0.969 25 C -0.186 4.186 26 C -0.163 4.163 27 C -0.374 4.374 28 S 0.591 5.409 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.245 0.755 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.006 0.994 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.633 13.908 16.956 22.414 hybrid contribution 0.057 -1.229 -1.689 2.089 sum -4.577 12.679 15.267 20.366 Atomic orbital electron populations 1.22984 0.78214 1.04020 1.01691 1.87932 1.22364 1.27403 1.95793 1.21015 0.82800 0.85926 1.04425 1.27150 1.02203 1.06287 0.92903 1.66850 1.03274 1.13788 1.33346 1.20289 0.90061 1.11083 0.93982 1.17412 0.86765 0.75991 0.82643 1.90739 1.17262 1.52827 1.84398 1.45997 1.11804 1.71572 1.04859 1.20915 0.91757 0.95747 0.86395 0.89719 1.22375 0.99292 0.96488 0.99936 1.20351 0.89793 0.95235 0.88287 1.44353 1.68626 1.04401 1.14994 1.19566 1.38168 0.92590 0.87441 0.90290 1.25831 1.00258 0.99907 0.99026 1.70211 1.51914 1.10832 1.25720 0.85331 0.76760 0.78427 0.80345 1.21655 1.22731 1.18868 1.20642 0.93745 0.84006 0.96286 0.96898 1.21723 1.00581 0.99870 0.96386 1.22235 0.98760 0.99326 0.95983 1.27018 1.08399 1.05232 0.96762 1.82230 0.91100 1.60111 1.07498 0.91024 0.93260 0.89087 0.86814 0.89989 0.75459 0.91204 0.93691 0.93328 0.99392 0.94613 0.94121 0.90533 0.92750 0.89352 0.89878 0.78129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.55 10.69 -148.98 -1.59 -11.15 16 3 C 0.14 2.49 6.51 71.24 0.46 2.96 16 4 C -0.01 -0.16 6.97 88.58 0.62 0.46 16 5 N -0.45 -14.22 10.12 -180.83 -1.83 -16.05 16 6 C -0.02 -0.59 6.70 40.56 0.27 -0.32 16 7 C 0.59 21.95 7.76 86.62 0.67 22.63 16 8 O -0.57 -23.38 16.37 -4.14 -0.07 -23.45 16 9 N -0.69 -25.71 4.26 -445.82 -1.90 -27.61 16 10 C 0.16 5.69 2.78 45.02 0.13 5.82 16 11 H 0.08 2.96 7.57 -2.39 -0.02 2.95 16 12 C -0.14 -5.99 5.77 30.67 0.18 -5.81 16 13 C 0.19 9.76 5.03 86.36 0.43 10.19 16 14 N -0.60 -30.02 2.99 -675.22 -2.02 -32.04 16 15 C -0.25 -13.42 8.60 84.03 0.72 -12.70 16 16 H 0.08 4.08 6.21 -2.91 -0.02 4.06 16 17 C -0.06 -3.16 4.96 84.86 0.42 -2.74 16 18 N -0.94 -57.70 11.14 21.65 0.24 -57.46 16 19 Si 0.96 45.79 29.58 68.60 2.03 47.82 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 23 C 0.16 6.37 3.20 44.98 0.14 6.52 16 24 H 0.01 0.57 6.64 -2.39 -0.02 0.55 16 25 C -0.13 -4.53 7.94 71.98 0.57 -3.96 16 26 C -0.12 -4.09 5.07 30.67 0.16 -3.93 16 27 C -0.23 -5.64 10.62 67.12 0.71 -4.92 16 28 S 0.33 5.58 22.92 -56.49 -1.29 4.29 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.41 15.56 6.39 -92.70 -0.59 14.97 16 35 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 36 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 2.86 6.06 -2.39 -0.01 2.84 16 38 H -0.01 -0.68 7.74 -2.39 -0.02 -0.70 16 39 H 0.24 14.72 8.31 -92.70 -0.77 13.95 16 40 H 0.04 1.59 7.62 -2.39 -0.02 1.57 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.05 1.91 7.45 -2.39 -0.02 1.90 16 43 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.20 4.29 8.03 -2.91 -0.02 4.27 16 Total: -1.00 -75.09 375.75 0.72 -74.37 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.42 Total: 25.44 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 6.74 Total: 15.83 kcal Atomic # 7 Polarization: -127.65 SS G_CDS: -5.51 Total: -133.16 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.66 Total: -34.59 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.29 Total: 4.29 kcal Total: -75.09 0.72 -74.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948085907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.531 kcal (2) G-P(sol) polarization free energy of solvation -75.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds