Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 114.00197 * 2 1 4 4 C 1.50692 * 109.47215 * 180.02562 * 3 2 1 5 5 N 1.28643 * 124.72444 * 89.99371 * 4 3 2 6 6 C 1.33560 * 115.77088 * 179.97438 * 5 4 3 7 7 C 1.47273 * 123.14215 * 179.97438 * 6 5 4 8 8 O 1.21632 * 119.99364 * 180.02562 * 7 6 5 9 9 N 1.34768 * 120.00063 * 0.02565 * 7 6 5 10 10 C 1.46501 * 120.00277 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.45597 * 35.02751 * 10 9 7 12 12 C 1.53041 * 109.44720 * 275.06752 * 10 9 7 13 13 C 1.52766 * 109.38583 * 301.22070 * 12 10 9 14 14 N 1.46923 * 109.00738 * 305.59243 * 13 12 10 15 15 C 1.36931 * 120.62975 * 233.58307 * 14 13 12 16 16 H 1.08000 * 120.00087 * 150.27281 * 15 14 13 17 17 C 1.38815 * 119.99962 * 330.26733 * 15 14 13 18 18 N 1.31616 * 119.99923 * 344.42202 * 17 15 14 19 19 Si 1.86802 * 119.99860 * 164.42123 * 17 15 14 20 20 H 1.48492 * 109.47071 * 266.31628 * 19 17 15 21 21 H 1.48504 * 109.47144 * 26.31902 * 19 17 15 22 22 H 1.48504 * 109.46762 * 146.31867 * 19 17 15 23 23 C 1.46928 * 118.73861 * 53.30417 * 14 13 12 24 24 H 1.09001 * 109.58728 * 66.57807 * 23 14 13 25 25 C 1.52997 * 109.58595 * 186.85390 * 23 14 13 26 26 C 1.53036 * 109.46390 * 155.00252 * 10 9 7 27 27 C 1.35204 * 113.71599 * 0.25526 * 6 5 4 28 28 S 1.70774 * 124.72065 * 269.99875 * 4 3 2 29 29 H 1.08995 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47255 * 300.00456 * 1 2 3 31 31 H 1.08995 * 109.46910 * 60.00425 * 1 2 3 32 32 H 1.09000 * 109.47046 * 59.99707 * 3 2 1 33 33 H 1.09000 * 109.46426 * 299.99680 * 3 2 1 34 34 H 0.97003 * 120.00110 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.50258 * 61.30273 * 12 10 9 36 36 H 1.09006 * 109.49628 * 181.39584 * 12 10 9 37 37 H 1.08992 * 109.51143 * 185.70597 * 13 12 10 38 38 H 1.08999 * 109.42622 * 65.42246 * 13 12 10 39 39 H 0.97002 * 120.00277 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.47164 * 60.00637 * 25 23 14 41 41 H 1.09005 * 109.47120 * 180.02562 * 25 23 14 42 42 H 1.08999 * 109.47362 * 300.00166 * 25 23 14 43 43 H 1.08999 * 109.49759 * 298.69510 * 26 10 9 44 44 H 1.08999 * 109.50063 * 178.59408 * 26 10 9 45 45 H 1.07996 * 125.58892 * 179.75189 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2426 1.1286 -1.0583 6 6 5.5579 1.0250 -0.8510 7 6 6.5416 0.9466 -1.9442 8 8 7.7273 0.8527 -1.6897 9 7 6.1280 0.9789 -3.2264 10 6 7.1066 0.9015 -4.3139 11 1 7.9256 0.2453 -4.0194 12 6 7.6542 2.3002 -4.6071 13 6 6.5011 3.2265 -4.9892 14 7 5.7531 2.6255 -6.1018 15 6 5.5252 3.3328 -7.2520 16 1 5.4309 2.8146 -8.1949 17 6 5.4153 4.7158 -7.2060 18 7 5.2222 5.3227 -6.0542 19 14 5.5416 5.7155 -8.7789 20 1 6.9453 6.1600 -8.9716 21 1 5.1247 4.8783 -9.9324 22 1 4.6550 6.9030 -8.6831 23 6 5.2596 1.2489 -5.9594 24 1 4.4936 1.2136 -5.1847 25 6 4.6670 0.7764 -7.2884 26 6 6.4315 0.3429 -5.5686 27 6 5.9015 0.9926 0.4563 28 16 4.4828 1.1094 1.4026 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.1825 1.0542 -3.4293 35 1 8.1554 2.6881 -3.7202 36 1 8.3640 2.2473 -5.4327 37 1 6.8978 4.1942 -5.2961 38 1 5.8402 3.3553 -4.1320 39 1 5.1458 6.2891 -6.0220 40 1 5.4357 0.8075 -8.0606 41 1 4.3011 -0.2448 -7.1805 42 1 3.8415 1.4297 -7.5709 43 1 6.0623 -0.6625 -5.3660 44 1 7.1527 0.3084 -6.3851 45 1 6.9076 0.9086 0.8398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948085909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = -12.379614 kcal Electronic energy + Delta-G solvation = -27845.613837 eV Core-core repulsion = 23990.920102 eV Total energy + Delta-G solvation = -3854.693735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52373 -39.10922 -38.04501 -37.36860 -34.26107 -32.30640 -31.82922 -31.11215 -29.60668 -28.37170 -26.48578 -26.26850 -25.29091 -24.58060 -22.07671 -21.60200 -20.57602 -19.93613 -18.97905 -18.43034 -16.87764 -16.66572 -16.20636 -16.11539 -15.89750 -15.37428 -15.07204 -14.90518 -14.34168 -14.09528 -13.80824 -13.71739 -13.62856 -13.08122 -12.95798 -12.70888 -12.49898 -12.41993 -12.09943 -11.78930 -11.74934 -11.39133 -11.16005 -10.98062 -10.67512 -10.59124 -10.36237 -10.13131 -10.11552 -10.02962 -9.98904 -9.81318 -9.78259 -9.63375 -9.25930 -9.11494 -8.53242 -8.42113 -6.58862 -5.74081 -3.18245 0.35635 1.04829 1.44875 1.91717 3.31233 3.39243 3.46447 3.47174 3.48905 3.66709 4.07847 4.51452 4.59797 4.89101 5.01725 5.04742 5.09741 5.15116 5.24027 5.36481 5.38742 5.39548 5.44665 5.65985 5.71263 5.78828 6.03676 6.17058 6.28741 6.35617 6.41912 6.49273 6.61533 6.67023 6.70478 6.81116 6.99345 7.06215 7.10760 7.31784 7.42824 7.72666 7.85615 7.93365 8.49629 8.49933 9.25646 9.89432 10.46839 11.34123 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.003295 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.591834 B = 8495.767598 C = 9296.049893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.140 3.860 4 C 0.019 3.981 5 N -0.418 5.418 6 C 0.017 3.983 7 C 0.591 3.409 8 O -0.545 6.545 9 N -0.691 5.691 10 C 0.152 3.848 11 H 0.074 0.926 12 C -0.153 4.153 13 C 0.176 3.824 14 N -0.586 5.586 15 C -0.250 4.250 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.289 1.289 21 H -0.279 1.279 22 H -0.292 1.292 23 C 0.167 3.833 24 H 0.022 0.978 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.223 4.223 28 S 0.223 5.777 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.411 0.589 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 -10.141 15.356 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.061 3.939 4 C -0.261 4.261 5 N -0.135 5.135 6 C -0.118 4.118 7 C 0.374 3.626 8 O -0.424 6.424 9 N -0.341 5.341 10 C 0.048 3.952 11 H 0.092 0.908 12 C -0.194 4.194 13 C 0.050 3.950 14 N -0.310 5.310 15 C -0.379 4.379 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.730 3.270 20 H -0.216 1.216 21 H -0.204 1.204 22 H -0.219 1.219 23 C 0.060 3.940 24 H 0.040 0.960 25 C -0.194 4.194 26 C -0.178 4.178 27 C -0.366 4.366 28 S 0.479 5.521 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.248 0.752 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.845 -10.156 16.030 19.857 hybrid contribution 0.125 0.914 -1.562 1.815 sum -5.719 -9.242 14.468 18.096 Atomic orbital electron populations 1.22804 0.79965 1.03253 1.00457 1.87945 1.20323 1.26366 1.95557 1.20789 0.84272 0.86034 1.02851 1.26554 1.00692 1.06959 0.91891 1.66878 1.03263 1.12125 1.31233 1.20552 0.89915 1.07593 0.93772 1.17003 0.86464 0.76990 0.82165 1.90778 1.16057 1.51572 1.83951 1.46000 1.12082 1.71447 1.04618 1.20968 0.90601 0.98010 0.85570 0.90798 1.22495 1.00618 0.95904 1.00342 1.20602 0.89624 0.95392 0.89357 1.44108 1.61155 1.09783 1.15922 1.19186 1.43701 0.88777 0.86275 0.91266 1.25083 1.00346 0.97711 0.96394 1.70037 1.52411 1.08415 1.23754 0.86321 0.77498 0.79929 0.83276 1.21583 1.20429 1.21899 1.20393 0.91997 0.86324 0.95270 0.96029 1.21798 1.01217 0.98563 0.97780 1.22360 1.00384 0.98490 0.96566 1.26660 1.06058 1.06953 0.96885 1.82676 0.94868 1.63372 1.11167 0.89196 0.93773 0.93356 0.90749 0.89522 0.75173 0.92764 0.91690 0.89776 0.96410 0.93806 0.92730 0.94323 0.91942 0.92543 0.90549 0.79174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.10 10.69 -35.23 -0.38 -4.48 16 3 C 0.14 1.39 6.51 36.00 0.23 1.62 16 4 C 0.02 0.23 6.97 -13.62 -0.09 0.14 16 5 N -0.42 -6.50 10.12 -8.51 -0.09 -6.59 16 6 C 0.02 0.28 6.70 -84.52 -0.57 -0.29 16 7 C 0.59 10.83 7.76 -12.59 -0.10 10.74 16 8 O -0.55 -10.98 16.37 5.25 0.09 -10.90 16 9 N -0.69 -12.63 4.26 -54.89 -0.23 -12.86 16 10 C 0.15 2.81 2.78 -67.89 -0.19 2.62 16 11 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 12 C -0.15 -3.16 5.75 -26.83 -0.15 -3.32 16 13 C 0.18 4.27 5.00 -3.93 -0.02 4.25 16 14 N -0.59 -14.32 2.99 -165.04 -0.49 -14.81 16 15 C -0.25 -6.66 8.58 -15.06 -0.13 -6.79 16 16 H 0.07 1.80 6.23 -52.49 -0.33 1.48 16 17 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 18 N -0.90 -26.19 11.23 55.49 0.62 -25.56 16 19 Si 0.90 21.68 29.58 -169.99 -5.03 16.65 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C 0.17 3.40 3.20 -67.60 -0.22 3.19 16 24 H 0.02 0.47 6.65 -51.93 -0.35 0.12 16 25 C -0.14 -2.54 7.95 37.16 0.30 -2.24 16 26 C -0.14 -2.43 5.07 -26.61 -0.13 -2.56 16 27 C -0.22 -2.85 10.62 29.65 0.31 -2.53 16 28 S 0.22 2.17 22.92 -107.50 -2.46 -0.30 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.41 7.63 6.39 -40.82 -0.26 7.37 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 2.31 6.14 -51.93 -0.32 1.99 16 38 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 1.02 7.44 -51.93 -0.39 0.64 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.19 2.15 8.03 -52.49 -0.42 1.72 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -32.43 375.86 -8.65 -41.08 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.61 Total: 5.94 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 0.27 Total: 6.16 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.19 Total: -59.83 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.29 Total: -15.37 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.46 Total: -0.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.43 -8.65 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948085909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.702 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds