Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 114.00197 * 2 1 4 4 C 1.50692 * 109.47215 * 180.02562 * 3 2 1 5 5 N 1.28643 * 124.72444 * 89.99371 * 4 3 2 6 6 C 1.33560 * 115.77088 * 179.97438 * 5 4 3 7 7 C 1.47273 * 123.14215 * 179.97438 * 6 5 4 8 8 O 1.21632 * 119.99364 * 180.02562 * 7 6 5 9 9 N 1.34768 * 120.00063 * 0.02565 * 7 6 5 10 10 C 1.46501 * 120.00277 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.45597 * 35.02751 * 10 9 7 12 12 C 1.53041 * 109.44720 * 275.06752 * 10 9 7 13 13 C 1.52766 * 109.38583 * 301.22070 * 12 10 9 14 14 N 1.46923 * 109.00738 * 305.59243 * 13 12 10 15 15 C 1.36931 * 120.62975 * 233.58307 * 14 13 12 16 16 H 1.08000 * 120.00087 * 150.27281 * 15 14 13 17 17 C 1.38815 * 119.99962 * 330.26733 * 15 14 13 18 18 N 1.31616 * 119.99923 * 344.42202 * 17 15 14 19 19 Si 1.86802 * 119.99860 * 164.42123 * 17 15 14 20 20 H 1.48492 * 109.47071 * 266.31628 * 19 17 15 21 21 H 1.48504 * 109.47144 * 26.31902 * 19 17 15 22 22 H 1.48504 * 109.46762 * 146.31867 * 19 17 15 23 23 C 1.46928 * 118.73861 * 53.30417 * 14 13 12 24 24 H 1.09001 * 109.58728 * 66.57807 * 23 14 13 25 25 C 1.52997 * 109.58595 * 186.85390 * 23 14 13 26 26 C 1.53036 * 109.46390 * 155.00252 * 10 9 7 27 27 C 1.35204 * 113.71599 * 0.25526 * 6 5 4 28 28 S 1.70774 * 124.72065 * 269.99875 * 4 3 2 29 29 H 1.08995 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47255 * 300.00456 * 1 2 3 31 31 H 1.08995 * 109.46910 * 60.00425 * 1 2 3 32 32 H 1.09000 * 109.47046 * 59.99707 * 3 2 1 33 33 H 1.09000 * 109.46426 * 299.99680 * 3 2 1 34 34 H 0.97003 * 120.00110 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.50258 * 61.30273 * 12 10 9 36 36 H 1.09006 * 109.49628 * 181.39584 * 12 10 9 37 37 H 1.08992 * 109.51143 * 185.70597 * 13 12 10 38 38 H 1.08999 * 109.42622 * 65.42246 * 13 12 10 39 39 H 0.97002 * 120.00277 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.47164 * 60.00637 * 25 23 14 41 41 H 1.09005 * 109.47120 * 180.02562 * 25 23 14 42 42 H 1.08999 * 109.47362 * 300.00166 * 25 23 14 43 43 H 1.08999 * 109.49759 * 298.69510 * 26 10 9 44 44 H 1.08999 * 109.50063 * 178.59408 * 26 10 9 45 45 H 1.07996 * 125.58892 * 179.75189 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2426 1.1286 -1.0583 6 6 5.5579 1.0250 -0.8510 7 6 6.5416 0.9466 -1.9442 8 8 7.7273 0.8527 -1.6897 9 7 6.1280 0.9789 -3.2264 10 6 7.1066 0.9015 -4.3139 11 1 7.9256 0.2453 -4.0194 12 6 7.6542 2.3002 -4.6071 13 6 6.5011 3.2265 -4.9892 14 7 5.7531 2.6255 -6.1018 15 6 5.5252 3.3328 -7.2520 16 1 5.4309 2.8146 -8.1949 17 6 5.4153 4.7158 -7.2060 18 7 5.2222 5.3227 -6.0542 19 14 5.5416 5.7155 -8.7789 20 1 6.9453 6.1600 -8.9716 21 1 5.1247 4.8783 -9.9324 22 1 4.6550 6.9030 -8.6831 23 6 5.2596 1.2489 -5.9594 24 1 4.4936 1.2136 -5.1847 25 6 4.6670 0.7764 -7.2884 26 6 6.4315 0.3429 -5.5686 27 6 5.9015 0.9926 0.4563 28 16 4.4828 1.1094 1.4026 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.1825 1.0542 -3.4293 35 1 8.1554 2.6881 -3.7202 36 1 8.3640 2.2473 -5.4327 37 1 6.8978 4.1942 -5.2961 38 1 5.8402 3.3553 -4.1320 39 1 5.1458 6.2891 -6.0220 40 1 5.4357 0.8075 -8.0606 41 1 4.3011 -0.2448 -7.1805 42 1 3.8415 1.4297 -7.5709 43 1 6.0623 -0.6625 -5.3660 44 1 7.1527 0.3084 -6.3851 45 1 6.9076 0.9086 0.8398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948085909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = -35.075174 kcal Electronic energy + Delta-G solvation = -27846.597990 eV Core-core repulsion = 23990.920102 eV Total energy + Delta-G solvation = -3855.677888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72812 -40.42205 -39.13497 -38.59531 -35.95235 -34.11407 -33.04191 -32.54842 -31.37315 -29.20215 -28.10273 -27.11338 -26.82732 -25.94160 -23.79400 -22.81823 -22.23701 -21.06470 -20.36590 -19.82457 -18.31112 -17.59865 -17.57407 -17.19278 -17.01160 -16.67938 -16.49476 -16.22788 -15.82532 -15.62335 -15.42266 -15.10281 -14.86673 -14.67731 -14.31888 -14.12784 -13.68056 -13.37282 -13.25305 -13.17055 -12.99696 -12.87368 -12.69198 -12.50706 -12.36720 -12.33213 -12.16972 -11.97915 -11.73195 -11.43856 -11.27286 -11.02214 -10.95312 -10.77977 -10.69197 -10.51831 -10.20524 -9.89609 -8.60412 -7.82274 -5.28668 -0.61310 0.17393 0.49673 0.78391 1.46629 1.48582 1.56692 2.18247 2.24519 2.52960 2.64057 3.20277 3.32807 3.60237 3.71059 3.88332 4.04684 4.05785 4.16436 4.16676 4.18170 4.40703 4.41776 4.55917 4.58031 4.61260 4.64732 4.73225 4.77063 4.90191 4.90939 4.95232 5.01360 5.07944 5.14700 5.38639 5.50617 5.51219 5.54872 5.72710 5.74518 6.07040 6.26185 6.44060 6.57320 7.08956 7.18761 7.90635 8.43665 9.24377 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.003295 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.591834 B = 8495.767598 C = 9296.049893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.138 3.862 4 C -0.006 4.006 5 N -0.455 5.455 6 C -0.018 4.018 7 C 0.587 3.413 8 O -0.571 6.571 9 N -0.693 5.693 10 C 0.156 3.844 11 H 0.084 0.916 12 C -0.141 4.141 13 C 0.191 3.809 14 N -0.600 5.600 15 C -0.248 4.248 16 H 0.078 0.922 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.961 3.039 20 H -0.291 1.291 21 H -0.265 1.265 22 H -0.299 1.299 23 C 0.160 3.840 24 H 0.014 0.986 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.231 4.231 28 S 0.333 5.667 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.409 0.591 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.047 0.953 38 H -0.010 1.010 39 H 0.245 0.755 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 -11.852 16.330 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.059 3.941 4 C -0.285 4.285 5 N -0.173 5.173 6 C -0.154 4.154 7 C 0.372 3.628 8 O -0.452 6.452 9 N -0.342 5.342 10 C 0.052 3.948 11 H 0.102 0.898 12 C -0.181 4.181 13 C 0.065 3.935 14 N -0.324 5.324 15 C -0.379 4.379 16 H 0.095 0.905 17 C -0.248 4.248 18 N -0.585 5.585 19 Si 0.790 3.210 20 H -0.218 1.218 21 H -0.189 1.189 22 H -0.226 1.226 23 C 0.054 3.946 24 H 0.031 0.969 25 C -0.186 4.186 26 C -0.164 4.164 27 C -0.374 4.374 28 S 0.591 5.409 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.245 0.755 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.008 0.992 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.594 -11.906 17.002 21.779 hybrid contribution 0.267 1.402 -1.707 2.225 sum -6.328 -10.504 15.296 19.604 Atomic orbital electron populations 1.23004 0.78231 1.04275 1.01506 1.87897 1.22261 1.26786 1.95776 1.20952 0.82915 0.86133 1.04110 1.27101 1.02115 1.06313 0.92940 1.66844 1.03329 1.13758 1.33359 1.20286 0.90059 1.11057 0.93989 1.17406 0.86757 0.75998 0.82633 1.90739 1.17181 1.52896 1.84390 1.45996 1.11770 1.71616 1.04862 1.20912 0.91147 0.96408 0.86348 0.89809 1.22308 0.99078 0.96684 1.00022 1.20249 0.90148 0.94759 0.88379 1.44334 1.61568 1.11253 1.15235 1.19545 1.41854 0.89114 0.87352 0.90461 1.25814 1.01093 0.98911 0.98986 1.70204 1.54481 1.08016 1.25766 0.85337 0.76908 0.78285 0.80451 1.21795 1.18901 1.22628 1.20624 0.93041 0.84664 0.96268 0.96864 1.21725 1.00307 1.00127 0.96433 1.22235 0.99095 0.99013 0.96039 1.27015 1.08379 1.05232 0.96749 1.82237 0.91101 1.60117 1.07460 0.88262 0.91574 0.93446 0.87224 0.90558 0.75453 0.93494 0.91247 0.93483 0.99163 0.94569 0.92766 0.90674 0.94057 0.89553 0.89868 0.78102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.13 10.69 -148.98 -1.59 -9.72 16 3 C 0.14 2.54 6.51 71.23 0.46 3.00 16 4 C -0.01 -0.14 6.97 88.57 0.62 0.47 16 5 N -0.46 -14.24 10.12 -180.84 -1.83 -16.07 16 6 C -0.02 -0.58 6.70 40.56 0.27 -0.31 16 7 C 0.59 21.93 7.76 86.62 0.67 22.60 16 8 O -0.57 -23.33 16.37 -4.13 -0.07 -23.39 16 9 N -0.69 -25.70 4.26 -445.82 -1.90 -27.60 16 10 C 0.16 5.69 2.78 45.02 0.13 5.81 16 11 H 0.08 2.95 7.58 -2.39 -0.02 2.93 16 12 C -0.14 -5.92 5.75 30.53 0.18 -5.74 16 13 C 0.19 9.65 5.00 86.22 0.43 10.08 16 14 N -0.60 -29.77 2.99 -676.06 -2.02 -31.79 16 15 C -0.25 -13.37 8.58 84.04 0.72 -12.65 16 16 H 0.08 3.98 6.23 -2.91 -0.02 3.96 16 17 C -0.05 -2.99 4.94 84.86 0.42 -2.57 16 18 N -0.94 -56.63 11.23 21.65 0.24 -56.39 16 19 Si 0.96 45.34 29.58 68.60 2.03 47.37 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 23 C 0.16 6.41 3.20 44.97 0.14 6.55 16 24 H 0.01 0.58 6.65 -2.39 -0.02 0.56 16 25 C -0.13 -4.57 7.95 71.98 0.57 -4.00 16 26 C -0.12 -4.15 5.07 30.67 0.16 -3.99 16 27 C -0.23 -5.62 10.62 67.12 0.71 -4.90 16 28 S 0.33 5.60 22.92 -56.49 -1.29 4.30 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.41 15.56 6.39 -92.71 -0.59 14.97 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 37 H 0.05 2.71 6.14 -2.39 -0.01 2.70 16 38 H -0.01 -0.54 7.74 -2.39 -0.02 -0.55 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.05 1.92 7.44 -2.38 -0.02 1.90 16 41 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.04 1.62 7.62 -2.39 -0.02 1.60 16 43 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.20 4.28 8.03 -2.91 -0.02 4.26 16 Total: -1.00 -73.05 375.86 0.71 -72.34 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.42 Total: 25.04 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 6.73 Total: 15.92 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -5.51 Total: -131.86 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.66 Total: -33.11 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.29 Total: 4.30 kcal Total: -73.05 0.71 -72.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948085909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.264 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds