Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00212 * 2 1 4 4 C 1.50703 * 109.47153 * 179.97438 * 3 2 1 5 5 N 1.30941 * 122.90702 * 270.03971 * 4 3 2 6 6 C 1.29427 * 117.36141 * 179.97438 * 5 4 3 7 7 S 1.70949 * 110.39482 * 359.72485 * 6 5 4 8 8 C 1.35668 * 122.90157 * 90.00152 * 4 3 2 9 9 C 1.46681 * 126.12805 * 0.03747 * 8 4 3 10 10 O 1.21679 * 120.00350 * 359.97438 * 9 8 4 11 11 N 1.34778 * 119.99420 * 179.97438 * 9 8 4 12 12 C 1.46505 * 119.99744 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.49865 * 35.06864 * 12 11 9 14 14 C 1.53188 * 109.49935 * 275.00131 * 12 11 9 15 15 N 1.46925 * 108.77350 * 294.68219 * 14 12 11 16 16 C 1.36936 * 120.63223 * 126.37026 * 15 14 12 17 17 H 1.07992 * 120.00660 * 207.69661 * 16 15 14 18 18 C 1.38816 * 119.99831 * 27.69413 * 16 15 14 19 19 N 1.31620 * 119.99978 * 17.35967 * 18 16 15 20 20 Si 1.86803 * 120.00186 * 197.36330 * 18 16 15 21 21 H 1.48505 * 109.46752 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47225 * 119.99636 * 20 18 16 23 23 H 1.48494 * 109.47200 * 239.99956 * 20 18 16 24 24 C 1.46928 * 118.74136 * 306.39373 * 15 14 12 25 25 C 1.53191 * 108.89396 * 53.53533 * 24 15 14 26 26 C 1.53039 * 109.49666 * 155.15983 * 12 11 9 27 27 H 1.09004 * 109.46226 * 178.59685 * 26 12 11 28 28 C 1.53003 * 109.46292 * 298.56787 * 26 12 11 29 29 H 1.08993 * 109.46920 * 59.99985 * 1 2 3 30 30 H 1.08995 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46470 * 300.00083 * 1 2 3 32 32 H 1.08995 * 109.46826 * 60.00169 * 3 2 1 33 33 H 1.08997 * 109.46925 * 299.99888 * 3 2 1 34 34 H 1.08000 * 124.79911 * 180.02562 * 6 5 4 35 35 H 0.97001 * 120.00431 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.58725 * 174.89941 * 14 12 11 37 37 H 1.08992 * 109.58737 * 54.46868 * 14 12 11 38 38 H 0.97006 * 119.99919 * 180.02562 * 19 18 16 39 39 H 1.08993 * 109.58775 * 173.39738 * 24 15 14 40 40 H 1.09002 * 109.58388 * 293.68018 * 24 15 14 41 41 H 1.08997 * 109.49299 * 65.39002 * 25 24 15 42 42 H 1.09000 * 109.49820 * 185.49074 * 25 24 15 43 43 H 1.09003 * 109.46949 * 60.00124 * 28 26 12 44 44 H 1.09004 * 109.46879 * 179.97438 * 28 26 12 45 45 H 1.08997 * 109.47314 * 300.00069 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2212 1.1297 1.1003 6 6 5.5054 1.0275 0.9757 7 16 5.9423 0.9855 -0.6765 8 6 4.2477 1.1280 -1.1381 9 6 3.7250 1.1701 -2.5080 10 8 2.5272 1.2652 -2.6996 11 7 4.5717 1.1033 -3.5546 12 6 4.0496 1.1447 -4.9228 13 1 3.1835 1.8053 -4.9619 14 6 3.6369 -0.2657 -5.3555 15 7 4.8373 -1.1102 -5.4218 16 6 4.8934 -2.2976 -4.7420 17 1 5.8456 -2.6881 -4.4147 18 6 3.7262 -2.9995 -4.4736 19 7 2.6260 -2.7275 -5.1429 20 14 3.7169 -4.3299 -3.1624 21 1 5.0696 -4.4404 -2.5597 22 1 2.7327 -3.9783 -2.1073 23 1 3.3408 -5.6282 -3.7772 24 6 5.9768 -0.6564 -6.2308 25 6 6.3644 0.7591 -5.7916 26 6 5.1343 1.6670 -5.8677 27 1 4.7535 1.6741 -6.8891 28 6 5.5245 3.0890 -5.4595 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 6.2020 0.9714 1.7991 35 1 5.5266 1.0278 -3.4019 36 1 3.1653 -0.2233 -6.3374 37 1 2.9378 -0.6807 -4.6296 38 1 1.8103 -3.2177 -4.9551 39 1 6.8213 -1.3292 -6.0824 40 1 5.6967 -0.6483 -7.2842 41 1 6.7326 0.7337 -4.7660 42 1 7.1441 1.1434 -6.4492 43 1 5.9049 3.0822 -4.4380 44 1 6.2973 3.4609 -6.1321 45 1 4.6496 3.7366 -5.5171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968399102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -8.069395 kcal Electronic energy + Delta-G solvation = -29063.591880 eV Core-core repulsion = 25209.085050 eV Total energy + Delta-G solvation = -3854.506830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.31339 -39.28842 -37.47599 -37.23694 -34.15978 -32.89641 -31.34692 -31.00099 -29.44689 -27.89350 -27.18321 -25.98236 -24.45591 -24.08070 -22.62330 -21.49051 -21.11494 -19.37540 -18.83757 -18.41432 -16.80711 -16.71289 -16.33303 -15.55220 -15.25642 -14.98459 -14.91927 -14.74292 -14.39408 -13.94436 -13.88351 -13.69372 -13.51764 -13.27380 -12.93672 -12.83110 -12.60928 -12.15842 -11.97013 -11.60733 -11.46684 -11.38494 -11.14933 -11.10426 -10.90087 -10.69961 -10.52440 -10.19178 -9.98413 -9.90421 -9.74087 -9.61377 -9.52456 -9.47103 -9.20822 -8.97550 -8.44884 -8.41311 -6.63972 -5.74714 -3.17216 0.28956 1.20027 1.57133 2.44735 3.39622 3.42371 3.49631 3.53199 3.65599 3.98505 4.43853 4.53861 4.98154 5.03352 5.12827 5.20211 5.25662 5.32436 5.43133 5.44218 5.55405 5.57003 5.65377 5.77014 5.83947 5.89595 5.90699 5.96766 6.06665 6.11758 6.25289 6.32625 6.41231 6.50175 6.60941 6.73072 6.84291 6.95020 7.33164 7.35700 7.57391 7.67581 7.83128 7.96388 8.48405 8.61289 9.23715 9.88008 10.42841 11.33161 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008754 B = 0.005968 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.596564 B = 4690.817023 C = 5971.535077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.376 6.376 3 C 0.132 3.868 4 C 0.125 3.875 5 N -0.462 5.462 6 C 0.020 3.980 7 S 0.172 5.828 8 C -0.249 4.249 9 C 0.593 3.407 10 O -0.522 6.522 11 N -0.689 5.689 12 C 0.126 3.874 13 H 0.079 0.921 14 C 0.159 3.841 15 N -0.587 5.587 16 C -0.255 4.255 17 H 0.064 0.936 18 C 0.010 3.990 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.290 1.290 24 C 0.142 3.858 25 C -0.130 4.130 26 C -0.095 4.095 27 H 0.080 0.920 28 C -0.145 4.145 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.205 0.795 35 H 0.393 0.607 36 H 0.027 0.973 37 H 0.099 0.901 38 H 0.253 0.747 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 12.581 7.168 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.294 6.294 3 C 0.053 3.947 4 C -0.012 4.012 5 N -0.176 5.176 6 C -0.276 4.276 7 S 0.427 5.573 8 C -0.374 4.374 9 C 0.376 3.624 10 O -0.400 6.400 11 N -0.339 5.339 12 C 0.021 3.979 13 H 0.097 0.903 14 C 0.032 3.968 15 N -0.309 5.309 16 C -0.384 4.384 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.539 5.539 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.217 1.217 24 C 0.016 3.984 25 C -0.169 4.169 26 C -0.114 4.114 27 H 0.098 0.902 28 C -0.202 4.202 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.222 0.778 35 H 0.228 0.772 36 H 0.045 0.955 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.702 12.301 7.039 15.277 hybrid contribution -0.520 -0.660 0.929 1.253 sum 5.182 11.641 7.969 15.029 Atomic orbital electron populations 1.22697 0.80670 1.02784 0.99776 1.87951 1.19815 1.26251 1.95413 1.20974 0.85202 0.86365 1.02164 1.20198 0.97171 0.98575 0.85303 1.65991 1.04963 1.15390 1.31234 1.28591 0.95241 1.03281 1.00455 1.83933 1.05984 1.64217 1.03137 1.25816 0.96307 1.15430 0.99814 1.16523 0.86314 0.77378 0.82152 1.90763 1.14262 1.50391 1.84585 1.45734 1.09409 1.72755 1.05973 1.21880 0.95594 1.01164 0.79295 0.90295 1.21222 0.89962 0.85682 0.99886 1.43973 1.12800 1.20238 1.53910 1.19084 0.93180 0.97402 1.28777 0.91865 1.24971 0.96994 0.97786 0.99197 1.70000 1.01043 1.42981 1.39872 0.86390 0.77749 0.81524 0.82143 1.20341 1.21245 1.21746 1.20926 0.91709 0.92140 0.93674 1.22097 0.96222 0.97958 1.00630 1.21331 0.96357 0.94085 0.99591 0.90195 1.21858 1.00878 0.96567 1.00914 0.93493 0.89686 0.94491 0.92322 0.88912 0.77845 0.77212 0.95515 0.88288 0.93658 0.92791 0.96386 0.92935 0.92598 0.93193 0.93014 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 11.01 101.05 1.11 1.66 16 2 O -0.38 -7.17 10.69 -35.23 -0.38 -7.55 16 3 C 0.13 2.23 5.75 36.01 0.21 2.43 16 4 C 0.13 2.16 6.42 -83.89 -0.54 1.63 16 5 N -0.46 -7.17 10.50 -11.53 -0.12 -7.29 16 6 C 0.02 0.24 12.22 51.75 0.63 0.87 16 7 S 0.17 2.19 22.35 -107.50 -2.40 -0.21 16 8 C -0.25 -4.29 6.48 -37.09 -0.24 -4.53 16 9 C 0.59 11.54 7.74 -12.85 -0.10 11.44 16 10 O -0.52 -11.49 13.93 5.21 0.07 -11.42 16 11 N -0.69 -12.37 4.25 -55.00 -0.23 -12.61 16 12 C 0.13 2.35 2.24 -67.81 -0.15 2.20 16 13 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 14 C 0.16 3.77 4.91 -3.71 -0.02 3.75 16 15 N -0.59 -14.04 2.91 -172.33 -0.50 -14.54 16 16 C -0.25 -6.89 9.59 -15.06 -0.14 -7.04 16 17 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 18 C 0.01 0.28 4.91 -17.43 -0.09 0.20 16 19 N -0.90 -26.53 11.19 55.49 0.62 -25.91 16 20 Si 0.89 22.70 29.59 -169.99 -5.03 17.67 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 C 0.14 2.77 6.51 -3.71 -0.02 2.75 16 25 C -0.13 -1.99 5.21 -26.59 -0.14 -2.13 16 26 C -0.09 -1.43 2.47 -90.56 -0.22 -1.66 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 C -0.14 -1.79 9.05 37.16 0.34 -1.45 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.61 6.01 -51.93 -0.31 1.30 16 34 H 0.20 1.52 8.06 -52.49 -0.42 1.09 16 35 H 0.39 6.43 5.83 -40.82 -0.24 6.19 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 2.79 6.03 -51.93 -0.31 2.48 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.80 6.41 -51.93 -0.33 0.47 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.61 7.54 -51.93 -0.39 0.21 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -33.56 374.25 -8.30 -41.86 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.59 Total: 4.24 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 0.62 Total: 10.12 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.24 Total: -60.35 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.30 Total: -18.97 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.40 Total: -0.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.56 -8.30 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968399102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.790 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds