Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00212 * 2 1 4 4 C 1.50703 * 109.47153 * 179.97438 * 3 2 1 5 5 N 1.30941 * 122.90702 * 270.03971 * 4 3 2 6 6 C 1.29427 * 117.36141 * 179.97438 * 5 4 3 7 7 S 1.70949 * 110.39482 * 359.72485 * 6 5 4 8 8 C 1.35668 * 122.90157 * 90.00152 * 4 3 2 9 9 C 1.46681 * 126.12805 * 0.03747 * 8 4 3 10 10 O 1.21679 * 120.00350 * 359.97438 * 9 8 4 11 11 N 1.34778 * 119.99420 * 179.97438 * 9 8 4 12 12 C 1.46505 * 119.99744 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.49865 * 35.06864 * 12 11 9 14 14 C 1.53188 * 109.49935 * 275.00131 * 12 11 9 15 15 N 1.46925 * 108.77350 * 294.68219 * 14 12 11 16 16 C 1.36936 * 120.63223 * 126.37026 * 15 14 12 17 17 H 1.07992 * 120.00660 * 207.69661 * 16 15 14 18 18 C 1.38816 * 119.99831 * 27.69413 * 16 15 14 19 19 N 1.31620 * 119.99978 * 17.35967 * 18 16 15 20 20 Si 1.86803 * 120.00186 * 197.36330 * 18 16 15 21 21 H 1.48505 * 109.46752 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47225 * 119.99636 * 20 18 16 23 23 H 1.48494 * 109.47200 * 239.99956 * 20 18 16 24 24 C 1.46928 * 118.74136 * 306.39373 * 15 14 12 25 25 C 1.53191 * 108.89396 * 53.53533 * 24 15 14 26 26 C 1.53039 * 109.49666 * 155.15983 * 12 11 9 27 27 H 1.09004 * 109.46226 * 178.59685 * 26 12 11 28 28 C 1.53003 * 109.46292 * 298.56787 * 26 12 11 29 29 H 1.08993 * 109.46920 * 59.99985 * 1 2 3 30 30 H 1.08995 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46470 * 300.00083 * 1 2 3 32 32 H 1.08995 * 109.46826 * 60.00169 * 3 2 1 33 33 H 1.08997 * 109.46925 * 299.99888 * 3 2 1 34 34 H 1.08000 * 124.79911 * 180.02562 * 6 5 4 35 35 H 0.97001 * 120.00431 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.58725 * 174.89941 * 14 12 11 37 37 H 1.08992 * 109.58737 * 54.46868 * 14 12 11 38 38 H 0.97006 * 119.99919 * 180.02562 * 19 18 16 39 39 H 1.08993 * 109.58775 * 173.39738 * 24 15 14 40 40 H 1.09002 * 109.58388 * 293.68018 * 24 15 14 41 41 H 1.08997 * 109.49299 * 65.39002 * 25 24 15 42 42 H 1.09000 * 109.49820 * 185.49074 * 25 24 15 43 43 H 1.09003 * 109.46949 * 60.00124 * 28 26 12 44 44 H 1.09004 * 109.46879 * 179.97438 * 28 26 12 45 45 H 1.08997 * 109.47314 * 300.00069 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2212 1.1297 1.1003 6 6 5.5054 1.0275 0.9757 7 16 5.9423 0.9855 -0.6765 8 6 4.2477 1.1280 -1.1381 9 6 3.7250 1.1701 -2.5080 10 8 2.5272 1.2652 -2.6996 11 7 4.5717 1.1033 -3.5546 12 6 4.0496 1.1447 -4.9228 13 1 3.1835 1.8053 -4.9619 14 6 3.6369 -0.2657 -5.3555 15 7 4.8373 -1.1102 -5.4218 16 6 4.8934 -2.2976 -4.7420 17 1 5.8456 -2.6881 -4.4147 18 6 3.7262 -2.9995 -4.4736 19 7 2.6260 -2.7275 -5.1429 20 14 3.7169 -4.3299 -3.1624 21 1 5.0696 -4.4404 -2.5597 22 1 2.7327 -3.9783 -2.1073 23 1 3.3408 -5.6282 -3.7772 24 6 5.9768 -0.6564 -6.2308 25 6 6.3644 0.7591 -5.7916 26 6 5.1343 1.6670 -5.8677 27 1 4.7535 1.6741 -6.8891 28 6 5.5245 3.0890 -5.4595 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 6.2020 0.9714 1.7991 35 1 5.5266 1.0278 -3.4019 36 1 3.1653 -0.2233 -6.3374 37 1 2.9378 -0.6807 -4.6296 38 1 1.8103 -3.2177 -4.9551 39 1 6.8213 -1.3292 -6.0824 40 1 5.6967 -0.6483 -7.2842 41 1 6.7326 0.7337 -4.7660 42 1 7.1441 1.1434 -6.4492 43 1 5.9049 3.0822 -4.4380 44 1 6.2973 3.4609 -6.1321 45 1 4.6496 3.7366 -5.5171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968399102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = -32.208418 kcal Electronic energy + Delta-G solvation = -29064.638626 eV Core-core repulsion = 25209.085050 eV Total energy + Delta-G solvation = -3855.553576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60851 -40.66799 -38.97151 -38.57308 -35.95043 -34.41910 -32.87376 -32.51721 -30.99132 -29.23527 -28.72611 -27.19430 -25.84272 -25.60238 -24.14908 -22.93201 -22.68214 -20.71979 -20.28917 -19.67299 -18.61064 -18.05895 -17.63627 -16.95177 -16.88893 -16.54993 -16.26572 -16.05249 -15.76795 -15.66069 -15.20042 -15.17086 -14.86996 -14.72540 -14.50168 -14.12653 -13.97615 -13.62194 -13.33795 -13.16677 -13.00249 -12.77685 -12.64881 -12.57686 -12.49118 -12.34760 -12.21406 -11.94515 -11.56735 -11.36402 -11.21903 -11.07764 -10.86972 -10.65878 -10.59614 -10.53012 -10.11129 -9.95643 -8.64813 -7.87343 -5.30480 -0.85814 0.10896 0.49612 1.28189 1.35448 1.41927 1.47338 1.96531 2.24541 2.46692 2.85972 3.29313 3.30840 3.67413 3.72994 3.84373 3.93541 3.98560 4.08120 4.12373 4.31059 4.41898 4.45860 4.51237 4.55754 4.67315 4.71179 4.73720 4.80386 4.87367 4.93044 4.96645 5.08747 5.17991 5.24183 5.26655 5.46673 5.50109 5.59558 5.67557 5.72339 6.10478 6.38795 6.42836 6.55463 7.14431 7.17316 7.88258 8.38004 9.17396 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008754 B = 0.005968 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.596564 B = 4690.817023 C = 5971.535077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.413 6.413 3 C 0.130 3.870 4 C 0.118 3.882 5 N -0.489 5.489 6 C 0.041 3.959 7 S 0.232 5.768 8 C -0.297 4.297 9 C 0.586 3.414 10 O -0.561 6.561 11 N -0.681 5.681 12 C 0.137 3.863 13 H 0.070 0.930 14 C 0.170 3.830 15 N -0.600 5.600 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.047 4.047 19 N -0.929 5.929 20 Si 0.942 3.058 21 H -0.258 1.258 22 H -0.308 1.308 23 H -0.290 1.290 24 C 0.135 3.865 25 C -0.117 4.117 26 C -0.088 4.088 27 H 0.081 0.919 28 C -0.136 4.136 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.255 0.745 35 H 0.402 0.598 36 H 0.001 0.999 37 H 0.048 0.952 38 H 0.243 0.757 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 14.043 8.462 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.332 6.332 3 C 0.051 3.949 4 C -0.021 4.021 5 N -0.203 5.203 6 C -0.253 4.253 7 S 0.488 5.512 8 C -0.422 4.422 9 C 0.372 3.628 10 O -0.442 6.442 11 N -0.331 5.331 12 C 0.031 3.969 13 H 0.088 0.912 14 C 0.042 3.958 15 N -0.323 5.323 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.243 4.243 19 N -0.576 5.576 20 Si 0.772 3.228 21 H -0.182 1.182 22 H -0.236 1.236 23 H -0.217 1.217 24 C 0.010 3.990 25 C -0.156 4.156 26 C -0.107 4.107 27 H 0.099 0.901 28 C -0.193 4.193 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.271 0.729 35 H 0.239 0.761 36 H 0.019 0.981 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.484 13.779 8.321 18.683 hybrid contribution -1.591 -1.116 0.539 2.017 sum 7.893 12.663 8.860 17.354 Atomic orbital electron populations 1.22863 0.79014 1.03443 1.01009 1.87880 1.21928 1.27790 1.95634 1.21008 0.85805 0.85627 1.02417 1.20345 0.97456 0.98227 0.86047 1.66051 1.06349 1.17421 1.30476 1.29517 0.94806 0.99283 1.01702 1.83615 1.01831 1.62910 1.02814 1.25676 0.99691 1.18376 0.98490 1.16949 0.85999 0.76476 0.83421 1.90734 1.15987 1.51996 1.85507 1.45605 1.09703 1.72425 1.05351 1.21585 0.97136 0.97543 0.80640 0.91230 1.20889 0.89286 0.88477 0.97104 1.44168 1.13835 1.19614 1.54679 1.19417 0.92989 0.97646 1.27465 0.91176 1.25606 0.97202 1.00177 1.01287 1.70154 1.01297 1.44410 1.41717 0.85563 0.77868 0.79605 0.79734 1.18220 1.23598 1.21683 1.21157 0.89966 0.94944 0.92909 1.21986 0.97001 0.94818 1.01797 1.21303 0.94931 0.96010 0.98484 0.90102 1.21774 1.01741 0.94015 1.01773 0.94124 0.89380 0.91320 0.90112 0.90440 0.72919 0.76094 0.98141 0.93350 0.94745 0.92368 0.96691 0.92269 0.88681 0.92732 0.90271 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 11.01 113.37 1.25 2.24 16 2 O -0.41 -16.35 10.69 -148.98 -1.59 -17.94 16 3 C 0.13 4.51 5.75 71.24 0.41 4.92 16 4 C 0.12 4.06 6.42 42.10 0.27 4.33 16 5 N -0.49 -14.19 10.50 -190.40 -2.00 -16.19 16 6 C 0.04 0.84 12.22 130.60 1.60 2.43 16 7 S 0.23 5.21 22.35 -56.49 -1.26 3.95 16 8 C -0.30 -10.15 6.48 23.88 0.15 -9.99 16 9 C 0.59 23.44 7.74 86.45 0.67 24.11 16 10 O -0.56 -26.33 13.93 -4.28 -0.06 -26.39 16 11 N -0.68 -24.33 4.25 -446.14 -1.90 -26.22 16 12 C 0.14 5.16 2.24 45.07 0.10 5.26 16 13 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 14 C 0.17 8.38 4.91 86.36 0.42 8.80 16 15 N -0.60 -28.93 2.91 -699.12 -2.04 -30.97 16 16 C -0.24 -13.31 9.59 84.03 0.81 -12.51 16 17 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 18 C -0.05 -2.74 4.91 84.86 0.42 -2.33 16 19 N -0.93 -57.99 11.19 21.65 0.24 -57.74 16 20 Si 0.94 47.83 29.59 68.60 2.03 49.86 16 21 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.31 -16.60 7.11 99.48 0.71 -15.90 16 23 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 24 C 0.14 5.06 6.51 86.36 0.56 5.62 16 25 C -0.12 -3.19 5.21 30.68 0.16 -3.03 16 26 C -0.09 -2.48 2.47 -10.75 -0.03 -2.51 16 27 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 28 C -0.14 -2.86 9.05 71.98 0.65 -2.21 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.88 6.01 -2.39 -0.01 2.86 16 34 H 0.26 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.40 12.46 5.83 -92.71 -0.54 11.92 16 36 H 0.00 0.03 8.14 -2.39 -0.02 0.02 16 37 H 0.05 2.90 6.03 -2.39 -0.01 2.89 16 38 H 0.24 15.05 8.31 -92.70 -0.77 14.28 16 39 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 40 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.06 1.56 6.41 -2.39 -0.02 1.55 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 1.12 7.54 -2.39 -0.02 1.10 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -78.78 374.25 1.34 -77.44 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.47 Total: 19.06 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 7.44 Total: 25.15 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -5.69 Total: -131.12 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.65 Total: -44.33 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.26 Total: 3.95 kcal Total: -78.78 1.34 -77.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968399102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.231 kcal (2) G-P(sol) polarization free energy of solvation -78.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds