Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00069 * 2 1 4 4 C 1.50701 * 109.47292 * 179.97438 * 3 2 1 5 5 N 1.29433 * 124.80372 * 90.02225 * 4 3 2 6 6 C 1.30938 * 117.36954 * 179.73817 * 5 4 3 7 7 C 1.35663 * 114.18678 * 0.02562 * 6 5 4 8 8 C 1.46686 * 126.13018 * 179.97438 * 7 6 5 9 9 O 1.21682 * 119.99982 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99961 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.49946 * 35.00175 * 11 10 8 13 13 C 1.53190 * 109.49840 * 274.93442 * 11 10 8 14 14 N 1.46931 * 108.77736 * 185.41745 * 13 11 10 15 15 C 1.36932 * 120.62729 * 233.63084 * 14 13 11 16 16 H 1.08003 * 120.00205 * 27.95944 * 15 14 13 17 17 C 1.38814 * 119.99959 * 207.95774 * 15 14 13 18 18 N 1.31622 * 120.00000 * 17.50534 * 17 15 14 19 19 Si 1.86806 * 120.00166 * 197.50300 * 17 15 14 20 20 H 1.48498 * 109.46788 * 94.06847 * 19 17 15 21 21 H 1.48500 * 109.46972 * 214.06947 * 19 17 15 22 22 H 1.48507 * 109.46882 * 334.06797 * 19 17 15 23 23 C 1.46917 * 118.73709 * 53.60836 * 14 13 11 24 24 C 1.53196 * 108.77943 * 306.39107 * 23 14 13 25 25 C 1.53035 * 109.33441 * 54.61989 * 24 23 14 26 26 H 1.09002 * 109.43358 * 58.69033 * 25 24 23 27 27 C 1.53001 * 109.48504 * 178.64869 * 25 24 23 28 28 S 1.70945 * 124.80574 * 269.72436 * 4 3 2 29 29 H 1.08997 * 109.47303 * 59.99925 * 1 2 3 30 30 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47107 * 299.99654 * 1 2 3 32 32 H 1.09003 * 109.47007 * 60.00272 * 3 2 1 33 33 H 1.08999 * 109.47291 * 299.99692 * 3 2 1 34 34 H 1.07997 * 122.90740 * 179.97438 * 6 5 4 35 35 H 0.97001 * 120.00489 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.58967 * 305.20319 * 13 11 10 37 37 H 1.08996 * 109.58893 * 65.62661 * 13 11 10 38 38 H 0.96998 * 119.99999 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.59328 * 66.18294 * 23 14 13 40 40 H 1.09001 * 109.58386 * 186.60534 * 23 14 13 41 41 H 1.08990 * 109.49783 * 174.59115 * 24 23 14 42 42 H 1.09006 * 109.49342 * 294.68794 * 24 23 14 43 43 H 1.08998 * 109.47502 * 180.08733 * 27 25 24 44 44 H 1.09003 * 109.47004 * 300.08913 * 27 25 24 45 45 H 1.09002 * 109.47366 * 60.08280 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2494 1.1283 -1.0618 6 6 5.5441 1.0311 -0.8919 7 6 5.9337 1.0042 0.4073 8 6 7.3134 0.9007 0.8946 9 8 8.2345 0.8288 0.1027 10 7 7.5608 0.8852 2.2193 11 6 8.9387 0.7812 2.7059 12 1 9.6043 1.3197 2.0314 13 6 9.3512 -0.6931 2.7623 14 7 10.6841 -0.7882 3.3731 15 6 11.6987 -1.4495 2.7340 16 1 11.7079 -1.5116 1.6558 17 6 12.7153 -2.0401 3.4720 18 7 12.5467 -2.2721 4.7566 19 14 14.3228 -2.5055 2.6420 20 1 15.3018 -1.4009 2.8046 21 1 14.8622 -3.7408 3.2653 22 1 14.0822 -2.7450 1.1963 23 6 10.9077 -0.1600 4.6822 24 6 10.4779 1.3084 4.6044 25 6 9.0324 1.3876 4.1080 26 1 8.3848 0.8333 4.7874 27 6 8.5883 2.8510 4.0611 28 16 4.4852 1.1164 1.4046 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 6.2414 0.9761 -1.7147 35 1 6.8265 0.9421 2.8506 36 1 8.6331 -1.2507 3.3636 37 1 9.3817 -1.1028 1.7527 38 1 13.2569 -2.6851 5.2722 39 1 10.3166 -0.6741 5.4401 40 1 11.9654 -0.2179 4.9393 41 1 10.5482 1.7609 5.5934 42 1 11.1295 1.8420 3.9124 43 1 7.5583 2.9070 3.7090 44 1 8.6551 3.2831 5.0596 45 1 9.2354 3.4055 3.3813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968692979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -13.771217 kcal Electronic energy + Delta-G solvation = -27024.003628 eV Core-core repulsion = 23169.249549 eV Total energy + Delta-G solvation = -3854.754079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38335 -39.50998 -38.23292 -37.57016 -34.54029 -33.10895 -31.87886 -31.10180 -29.50807 -28.41050 -27.29010 -26.56941 -24.48029 -24.02881 -22.82531 -21.35823 -20.95953 -20.04914 -19.23643 -18.68025 -17.11300 -17.04093 -16.76884 -16.23318 -15.88425 -15.39373 -15.20910 -14.82831 -14.60134 -14.18931 -14.03418 -13.73189 -13.48908 -13.38329 -13.20512 -13.11566 -12.83870 -12.49729 -12.07412 -11.95348 -11.85084 -11.66543 -11.53392 -11.05858 -10.81232 -10.69311 -10.39251 -10.28480 -10.19397 -10.15313 -10.00557 -9.88527 -9.77693 -9.67091 -9.57119 -9.29308 -8.88519 -8.40756 -6.67736 -5.77938 -3.20156 -0.07866 0.84167 1.27218 2.18962 3.08286 3.20783 3.28935 3.41118 3.47976 3.50934 3.90507 4.40856 4.52265 4.71963 4.79441 4.84360 4.87417 4.93737 5.04490 5.12033 5.22047 5.25209 5.36119 5.45136 5.58662 5.81922 5.86157 5.92282 6.01761 6.12914 6.18937 6.25826 6.49515 6.50416 6.59295 6.62412 6.70029 6.80546 6.95393 7.29269 7.34420 7.56800 7.63730 7.84555 8.21819 8.46389 9.22638 9.84576 10.40188 11.30865 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002494 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.585702 B =11222.466807 C =11753.604515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.042 3.958 5 N -0.458 5.458 6 C 0.112 3.888 7 C -0.274 4.274 8 C 0.590 3.410 9 O -0.516 6.516 10 N -0.712 5.712 11 C 0.133 3.867 12 H 0.090 0.910 13 C 0.141 3.859 14 N -0.586 5.586 15 C -0.250 4.250 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.278 1.278 23 C 0.167 3.833 24 C -0.133 4.133 25 C -0.091 4.091 26 H 0.068 0.932 27 C -0.145 4.145 28 S 0.191 5.809 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.192 0.808 35 H 0.392 0.608 36 H 0.018 0.982 37 H 0.059 0.941 38 H 0.253 0.747 39 H 0.019 0.981 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.505 11.116 -3.399 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.059 3.941 4 C -0.233 4.233 5 N -0.173 5.173 6 C -0.046 4.046 7 C -0.398 4.398 8 C 0.374 3.626 9 O -0.393 6.393 10 N -0.362 5.362 11 C 0.028 3.972 12 H 0.108 0.892 13 C 0.013 3.987 14 N -0.309 5.309 15 C -0.380 4.380 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.203 1.203 23 C 0.041 3.959 24 C -0.173 4.173 25 C -0.111 4.111 26 H 0.086 0.914 27 C -0.202 4.202 28 S 0.447 5.553 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.209 0.791 35 H 0.226 0.774 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.104 10.829 -3.257 25.723 hybrid contribution 0.791 -0.126 -0.762 1.105 sum -22.313 10.703 -4.019 25.071 Atomic orbital electron populations 1.22825 0.79799 1.03497 1.00375 1.87982 1.20458 1.26060 1.95528 1.20821 0.84315 0.86286 1.02712 1.26886 1.00577 1.04120 0.91682 1.66149 1.04967 1.15001 1.31222 1.22201 0.90473 0.96136 0.95760 1.26083 0.98441 1.17417 0.97901 1.16673 0.85564 0.77339 0.83039 1.90887 1.43906 1.49462 1.55066 1.46054 1.10465 1.74025 1.05663 1.21877 0.80101 1.00238 0.95012 0.89166 1.21197 0.88299 0.91396 0.97800 1.43991 1.05611 1.61450 1.19849 1.19242 1.00485 1.27510 0.90747 0.91490 1.25029 1.00179 0.98242 0.96150 1.70044 1.32309 1.45569 1.06871 0.86255 0.83931 0.77529 0.78997 1.21431 1.21804 1.20293 1.20854 1.01921 0.86621 0.86501 1.22248 0.93814 1.01634 0.99576 1.21318 0.99034 0.95189 0.95526 0.91398 1.21865 1.00375 0.96636 1.01352 1.83812 0.96639 1.63947 1.10920 0.93521 0.88986 0.93597 0.90617 0.89740 0.79130 0.77446 0.96402 0.92219 0.93672 0.96260 0.89233 0.92604 0.92333 0.93544 0.92802 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.43 10.69 -35.23 -0.38 -3.81 16 3 C 0.14 1.03 6.51 36.01 0.23 1.27 16 4 C 0.04 0.44 7.02 -13.29 -0.09 0.34 16 5 N -0.46 -5.68 10.51 -11.50 -0.12 -5.81 16 6 C 0.11 1.43 11.09 -18.85 -0.21 1.22 16 7 C -0.27 -3.56 6.49 -37.09 -0.24 -3.80 16 8 C 0.59 9.35 7.75 -12.85 -0.10 9.25 16 9 O -0.52 -10.18 16.53 5.21 0.09 -10.09 16 10 N -0.71 -10.41 4.36 -55.00 -0.24 -10.65 16 11 C 0.13 2.35 2.06 -67.81 -0.14 2.21 16 12 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 13 C 0.14 3.07 6.09 -3.71 -0.02 3.04 16 14 N -0.59 -14.82 2.99 -172.32 -0.52 -15.33 16 15 C -0.25 -7.03 9.58 -15.06 -0.14 -7.18 16 16 H 0.07 1.90 7.89 -52.48 -0.41 1.49 16 17 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 18 N -0.90 -26.24 11.22 55.49 0.62 -25.61 16 19 Si 0.90 22.14 29.59 -169.99 -5.03 17.11 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16 24 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 25 C -0.09 -1.43 2.27 -90.58 -0.21 -1.64 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 C -0.14 -1.84 9.02 37.16 0.34 -1.50 16 28 S 0.19 1.84 22.31 -107.50 -2.40 -0.56 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 35 H 0.39 4.64 7.49 -40.82 -0.31 4.33 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.52 7.36 -51.93 -0.38 0.13 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -33.32 382.37 -8.78 -42.10 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.85 Total: 1.11 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 0.28 Total: 5.78 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.25 Total: -57.40 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.29 Total: -13.90 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.40 Total: -0.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.32 -8.78 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968692979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.328 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds