Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99832 * 2 1 4 4 C 1.50700 * 109.46579 * 180.02562 * 3 2 1 5 5 N 1.29433 * 124.80578 * 90.02406 * 4 3 2 6 6 C 1.30943 * 117.36354 * 179.68270 * 5 4 3 7 7 C 1.35667 * 114.19304 * 0.52737 * 6 5 4 8 8 C 1.46680 * 126.13398 * 179.78394 * 7 6 5 9 9 O 1.21693 * 119.99678 * 359.71562 * 8 7 6 10 10 N 1.34769 * 120.00218 * 179.71199 * 8 7 6 11 11 C 1.46500 * 120.00269 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.49561 * 324.94001 * 11 10 8 13 13 C 1.53195 * 109.49197 * 85.00321 * 11 10 8 14 14 N 1.46917 * 108.77828 * 65.35234 * 13 11 10 15 15 C 1.36935 * 120.63313 * 233.58525 * 14 13 11 16 16 H 1.08003 * 120.00334 * 151.84309 * 15 14 13 17 17 C 1.38816 * 120.00109 * 331.84348 * 15 14 13 18 18 N 1.31624 * 119.99356 * 343.07479 * 17 15 14 19 19 Si 1.86793 * 120.00395 * 163.07501 * 17 15 14 20 20 H 1.48500 * 109.47341 * 59.99642 * 19 17 15 21 21 H 1.48504 * 109.47235 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46651 * 299.99824 * 19 17 15 23 23 C 1.46934 * 118.73910 * 53.60508 * 14 13 11 24 24 C 1.53194 * 108.89214 * 306.32295 * 23 14 13 25 25 C 1.53042 * 109.52905 * 204.85654 * 11 10 8 26 26 H 1.08991 * 109.45872 * 181.39580 * 25 11 10 27 27 C 1.52999 * 109.45796 * 61.41710 * 25 11 10 28 28 S 1.70959 * 124.80632 * 269.99534 * 4 3 2 29 29 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47102 * 300.00612 * 1 2 3 31 31 H 1.08998 * 109.46986 * 60.00096 * 1 2 3 32 32 H 1.08991 * 109.47519 * 60.00033 * 3 2 1 33 33 H 1.08997 * 109.47027 * 299.99559 * 3 2 1 34 34 H 1.07999 * 122.90665 * 180.34818 * 6 5 4 35 35 H 0.97002 * 120.00299 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.58933 * 305.55996 * 13 11 10 37 37 H 1.09007 * 109.58443 * 185.13674 * 13 11 10 38 38 H 0.96997 * 119.99488 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.58460 * 66.18260 * 23 14 13 40 40 H 1.09001 * 109.58650 * 186.46265 * 23 14 13 41 41 H 1.08996 * 109.49250 * 174.65763 * 24 23 14 42 42 H 1.09002 * 109.49602 * 294.75299 * 24 23 14 43 43 H 1.09000 * 109.46817 * 59.99939 * 27 25 11 44 44 H 1.08991 * 109.47274 * 179.97438 * 27 25 11 45 45 H 1.08995 * 109.47589 * 300.00425 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2486 1.1286 -1.0637 6 6 5.5435 1.0323 -0.8947 7 6 5.9334 0.9952 0.4042 8 6 7.3130 0.8861 0.8904 9 8 8.2335 0.8142 0.0977 10 7 7.5611 0.8656 2.2149 11 6 8.9389 0.7561 2.7005 12 1 9.5123 0.1190 2.0273 13 6 9.5749 2.1488 2.7522 14 7 8.8702 2.9535 3.7594 15 6 8.3506 4.1782 3.4352 16 1 7.4903 4.5577 3.9665 17 6 8.9297 4.9322 2.4236 18 7 10.1451 4.6490 2.0053 19 14 7.9840 6.3484 1.6560 20 1 7.6526 7.3477 2.7034 21 1 8.8169 6.9885 0.6062 22 1 6.7305 5.8345 1.0478 23 6 8.7340 2.4193 5.1214 24 6 8.1059 1.0240 5.0464 25 6 8.9397 0.1470 4.1045 26 1 9.9632 0.0889 4.4746 27 6 8.3364 -1.2581 4.0508 28 16 4.4859 1.1091 1.4027 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 6.2407 0.9836 -1.7180 35 1 6.8273 0.9226 2.8468 36 1 9.4878 2.6268 1.7764 37 1 10.6264 2.0604 3.0255 38 1 10.5499 5.1760 1.2987 39 1 9.7169 2.3529 5.5879 40 1 8.0940 3.0770 5.7095 41 1 8.0872 0.5796 6.0414 42 1 7.0883 1.1032 4.6636 43 1 8.9298 -1.8829 3.3832 44 1 8.3373 -1.6923 5.0505 45 1 7.3131 -1.2003 3.6802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968692980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = -12.021351 kcal Electronic energy + Delta-G solvation = -28098.065002 eV Core-core repulsion = 24243.386803 eV Total energy + Delta-G solvation = -3854.678199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.10912 -39.35316 -38.08246 -37.39912 -34.17360 -32.90033 -31.63701 -31.03198 -29.53438 -28.31559 -27.29731 -26.42291 -24.30947 -23.94571 -22.59534 -21.54837 -21.12394 -19.57861 -18.83918 -18.48331 -16.91116 -16.88768 -16.74200 -15.96128 -15.65163 -15.09490 -15.02171 -14.69685 -14.45071 -13.97952 -13.92371 -13.69359 -13.60722 -13.29508 -12.93937 -12.92652 -12.68288 -12.59240 -11.99097 -11.80687 -11.62828 -11.56616 -11.42452 -11.13280 -10.92964 -10.73260 -10.54805 -10.25943 -10.19468 -9.96907 -9.90288 -9.74492 -9.57041 -9.49121 -9.45860 -9.00307 -8.47654 -8.44469 -6.66196 -5.77980 -3.21178 0.22142 1.13298 1.57433 2.46891 3.37116 3.39398 3.43923 3.45080 3.45689 3.67937 4.13683 4.49252 4.62401 4.93586 4.98893 5.05624 5.07967 5.13103 5.20455 5.20622 5.31611 5.31942 5.38153 5.41848 5.53430 5.84617 5.89603 5.97209 6.09419 6.12352 6.25153 6.32898 6.40692 6.49693 6.60068 6.65894 6.71875 6.83372 6.93863 7.31851 7.55975 7.64539 7.78981 7.94816 8.45595 8.59482 9.20450 9.84478 10.40243 11.30011 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004261 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.309605 B = 6569.188377 C = 7803.520590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.140 3.860 4 C 0.034 3.966 5 N -0.458 5.458 6 C 0.104 3.896 7 C -0.263 4.263 8 C 0.592 3.408 9 O -0.528 6.528 10 N -0.689 5.689 11 C 0.125 3.875 12 H 0.080 0.920 13 C 0.160 3.840 14 N -0.587 5.587 15 C -0.256 4.256 16 H 0.063 0.937 17 C 0.009 3.991 18 N -0.897 5.897 19 Si 0.896 3.104 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.142 3.858 24 C -0.130 4.130 25 C -0.094 4.094 26 H 0.080 0.920 27 C -0.145 4.145 28 S 0.196 5.804 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.190 0.810 35 H 0.393 0.607 36 H 0.098 0.902 37 H 0.028 0.972 38 H 0.255 0.745 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.326 -10.739 1.465 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.241 4.241 5 N -0.174 5.174 6 C -0.053 4.053 7 C -0.388 4.388 8 C 0.375 3.625 9 O -0.406 6.406 10 N -0.339 5.339 11 C 0.020 3.980 12 H 0.098 0.902 13 C 0.033 3.967 14 N -0.310 5.310 15 C -0.386 4.386 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.540 5.540 19 Si 0.726 3.274 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.212 1.212 23 C 0.015 3.985 24 C -0.169 4.169 25 C -0.113 4.113 26 H 0.099 0.901 27 C -0.203 4.203 28 S 0.452 5.548 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.207 0.793 35 H 0.228 0.772 36 H 0.116 0.884 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.949 -10.808 1.397 18.499 hybrid contribution -0.382 1.093 -0.902 1.468 sum -15.331 -9.715 0.495 18.157 Atomic orbital electron populations 1.22806 0.80042 1.03266 1.00379 1.87963 1.20264 1.26363 1.95539 1.20801 0.84479 0.85987 1.02698 1.26802 1.00415 1.04966 0.91911 1.66116 1.05011 1.14970 1.31283 1.22129 0.90425 0.97000 0.95753 1.26100 0.98651 1.16258 0.97777 1.16579 0.85391 0.77340 0.83141 1.90826 1.43963 1.50648 1.55208 1.45738 1.10075 1.72744 1.05312 1.21893 0.81783 1.00790 0.93555 0.90242 1.21217 0.92488 0.86632 0.96364 1.43964 1.65940 1.17349 1.03703 1.19027 1.07762 0.93867 1.17919 0.91917 1.25003 0.95096 0.97634 1.01329 1.69980 1.12176 1.41395 1.30455 0.86476 0.79457 0.82367 0.79123 1.20867 1.21531 1.21170 1.20936 0.97216 0.91909 0.88398 1.22148 0.98924 0.98017 0.97838 1.21378 1.00566 0.94040 0.95358 0.90145 1.21859 1.00767 0.96633 1.01016 1.83814 0.96643 1.63560 1.10804 0.89156 0.93638 0.93595 0.90611 0.89847 0.79325 0.77201 0.88439 0.95409 0.93489 0.96332 0.92785 0.92554 0.92926 0.92977 0.92987 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.13 10.69 -35.23 -0.38 -4.51 16 3 C 0.14 1.43 6.51 36.01 0.23 1.66 16 4 C 0.03 0.46 7.02 -13.29 -0.09 0.37 16 5 N -0.46 -7.16 10.51 -11.50 -0.12 -7.28 16 6 C 0.10 1.70 11.09 -18.85 -0.21 1.49 16 7 C -0.26 -4.46 6.48 -37.09 -0.24 -4.70 16 8 C 0.59 11.55 7.75 -12.86 -0.10 11.45 16 9 O -0.53 -11.92 16.53 5.20 0.09 -11.83 16 10 N -0.69 -12.45 4.25 -55.00 -0.23 -12.69 16 11 C 0.13 2.35 2.24 -67.81 -0.15 2.20 16 12 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 13 C 0.16 3.77 4.90 -3.71 -0.02 3.75 16 14 N -0.59 -13.96 2.91 -172.31 -0.50 -14.46 16 15 C -0.26 -6.84 9.58 -15.06 -0.14 -6.98 16 16 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 17 C 0.01 0.25 4.92 -17.43 -0.09 0.16 16 18 N -0.90 -26.30 11.20 55.49 0.62 -25.68 16 19 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.14 2.76 6.50 -3.71 -0.02 2.74 16 24 C -0.13 -2.00 5.23 -26.45 -0.14 -2.14 16 25 C -0.09 -1.44 2.48 -90.42 -0.22 -1.67 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 27 C -0.15 -1.84 9.05 37.16 0.34 -1.50 16 28 S 0.20 2.65 22.31 -107.50 -2.40 0.25 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.19 2.90 8.06 -52.49 -0.42 2.48 16 35 H 0.39 6.46 5.83 -40.82 -0.24 6.23 16 36 H 0.10 2.72 6.06 -51.93 -0.31 2.41 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.80 6.41 -51.93 -0.33 0.47 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -32.70 379.23 -8.69 -41.39 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.70 Total: 3.89 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 0.25 Total: 8.15 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.24 Total: -60.11 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.29 Total: -16.34 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.40 Total: 0.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.70 -8.69 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968692980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.364 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds