Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99832 * 2 1 4 4 C 1.50700 * 109.46579 * 180.02562 * 3 2 1 5 5 N 1.29433 * 124.80578 * 90.02406 * 4 3 2 6 6 C 1.30943 * 117.36354 * 179.68270 * 5 4 3 7 7 C 1.35667 * 114.19304 * 0.52737 * 6 5 4 8 8 C 1.46680 * 126.13398 * 179.78394 * 7 6 5 9 9 O 1.21693 * 119.99678 * 359.71562 * 8 7 6 10 10 N 1.34769 * 120.00218 * 179.71199 * 8 7 6 11 11 C 1.46500 * 120.00269 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.49561 * 324.94001 * 11 10 8 13 13 C 1.53195 * 109.49197 * 85.00321 * 11 10 8 14 14 N 1.46917 * 108.77828 * 65.35234 * 13 11 10 15 15 C 1.36935 * 120.63313 * 233.58525 * 14 13 11 16 16 H 1.08003 * 120.00334 * 151.84309 * 15 14 13 17 17 C 1.38816 * 120.00109 * 331.84348 * 15 14 13 18 18 N 1.31624 * 119.99356 * 343.07479 * 17 15 14 19 19 Si 1.86793 * 120.00395 * 163.07501 * 17 15 14 20 20 H 1.48500 * 109.47341 * 59.99642 * 19 17 15 21 21 H 1.48504 * 109.47235 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46651 * 299.99824 * 19 17 15 23 23 C 1.46934 * 118.73910 * 53.60508 * 14 13 11 24 24 C 1.53194 * 108.89214 * 306.32295 * 23 14 13 25 25 C 1.53042 * 109.52905 * 204.85654 * 11 10 8 26 26 H 1.08991 * 109.45872 * 181.39580 * 25 11 10 27 27 C 1.52999 * 109.45796 * 61.41710 * 25 11 10 28 28 S 1.70959 * 124.80632 * 269.99534 * 4 3 2 29 29 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47102 * 300.00612 * 1 2 3 31 31 H 1.08998 * 109.46986 * 60.00096 * 1 2 3 32 32 H 1.08991 * 109.47519 * 60.00033 * 3 2 1 33 33 H 1.08997 * 109.47027 * 299.99559 * 3 2 1 34 34 H 1.07999 * 122.90665 * 180.34818 * 6 5 4 35 35 H 0.97002 * 120.00299 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.58933 * 305.55996 * 13 11 10 37 37 H 1.09007 * 109.58443 * 185.13674 * 13 11 10 38 38 H 0.96997 * 119.99488 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.58460 * 66.18260 * 23 14 13 40 40 H 1.09001 * 109.58650 * 186.46265 * 23 14 13 41 41 H 1.08996 * 109.49250 * 174.65763 * 24 23 14 42 42 H 1.09002 * 109.49602 * 294.75299 * 24 23 14 43 43 H 1.09000 * 109.46817 * 59.99939 * 27 25 11 44 44 H 1.08991 * 109.47274 * 179.97438 * 27 25 11 45 45 H 1.08995 * 109.47589 * 300.00425 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2486 1.1286 -1.0637 6 6 5.5435 1.0323 -0.8947 7 6 5.9334 0.9952 0.4042 8 6 7.3130 0.8861 0.8904 9 8 8.2335 0.8142 0.0977 10 7 7.5611 0.8656 2.2149 11 6 8.9389 0.7561 2.7005 12 1 9.5123 0.1190 2.0273 13 6 9.5749 2.1488 2.7522 14 7 8.8702 2.9535 3.7594 15 6 8.3506 4.1782 3.4352 16 1 7.4903 4.5577 3.9665 17 6 8.9297 4.9322 2.4236 18 7 10.1451 4.6490 2.0053 19 14 7.9840 6.3484 1.6560 20 1 7.6526 7.3477 2.7034 21 1 8.8169 6.9885 0.6062 22 1 6.7305 5.8345 1.0478 23 6 8.7340 2.4193 5.1214 24 6 8.1059 1.0240 5.0464 25 6 8.9397 0.1470 4.1045 26 1 9.9632 0.0889 4.4746 27 6 8.3364 -1.2581 4.0508 28 16 4.4859 1.1091 1.4027 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 6.2407 0.9836 -1.7180 35 1 6.8273 0.9226 2.8468 36 1 9.4878 2.6268 1.7764 37 1 10.6264 2.0604 3.0255 38 1 10.5499 5.1760 1.2987 39 1 9.7169 2.3529 5.5879 40 1 8.0940 3.0770 5.7095 41 1 8.0872 0.5796 6.0414 42 1 7.0883 1.1032 4.6636 43 1 8.9298 -1.8829 3.3832 44 1 8.3373 -1.6923 5.0505 45 1 7.3131 -1.2003 3.6802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968692980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = -34.856486 kcal Electronic energy + Delta-G solvation = -28099.055208 eV Core-core repulsion = 24243.386803 eV Total energy + Delta-G solvation = -3855.668405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45810 -40.68511 -39.10822 -38.67437 -35.95571 -34.44393 -32.92532 -32.65273 -30.99693 -29.45747 -28.83950 -27.12547 -25.90877 -25.16718 -24.06564 -22.97377 -22.70019 -20.88468 -20.33328 -19.73199 -18.62316 -18.12101 -17.61541 -17.06778 -16.89678 -16.55035 -16.38957 -16.02975 -15.79016 -15.65906 -15.21964 -15.17372 -14.91733 -14.78117 -14.51419 -14.12348 -13.73272 -13.61314 -13.28938 -13.15424 -13.03348 -12.75762 -12.71936 -12.62001 -12.50475 -12.38116 -12.27980 -11.96137 -11.58240 -11.42418 -11.25904 -11.07827 -10.91189 -10.74958 -10.67816 -10.53844 -10.18111 -10.01290 -8.64386 -7.86734 -5.31224 -0.96706 -0.00163 0.40684 1.24422 1.38947 1.42638 1.47656 2.00267 2.19180 2.47791 2.60564 3.25572 3.29375 3.66582 3.72489 3.77701 3.88717 3.97582 4.11353 4.12115 4.21788 4.34423 4.50081 4.54918 4.60585 4.66215 4.70600 4.79257 4.87571 4.89083 4.90584 4.95820 5.07348 5.17456 5.22982 5.25575 5.45375 5.48456 5.58296 5.65735 5.70823 6.03700 6.37185 6.39151 6.49657 7.11593 7.14449 7.87807 8.38617 9.18253 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004261 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.309605 B = 6569.188377 C = 7803.520590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.137 3.863 4 C 0.040 3.960 5 N -0.480 5.480 6 C 0.106 3.894 7 C -0.304 4.304 8 C 0.588 3.412 9 O -0.572 6.572 10 N -0.680 5.680 11 C 0.135 3.865 12 H 0.069 0.931 13 C 0.170 3.830 14 N -0.600 5.600 15 C -0.250 4.250 16 H 0.071 0.929 17 C -0.048 4.048 18 N -0.932 5.932 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.301 1.301 22 H -0.284 1.284 23 C 0.135 3.865 24 C -0.118 4.118 25 C -0.088 4.088 26 H 0.082 0.918 27 C -0.137 4.137 28 S 0.252 5.748 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.186 0.814 35 H 0.403 0.597 36 H 0.049 0.951 37 H 0.002 0.998 38 H 0.245 0.755 39 H 0.015 0.985 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.756 -11.834 3.609 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.057 3.943 4 C -0.235 4.235 5 N -0.196 5.196 6 C -0.053 4.053 7 C -0.429 4.429 8 C 0.373 3.627 9 O -0.453 6.453 10 N -0.330 5.330 11 C 0.029 3.971 12 H 0.087 0.913 13 C 0.043 3.957 14 N -0.324 5.324 15 C -0.381 4.381 16 H 0.089 0.911 17 C -0.244 4.244 18 N -0.579 5.579 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.228 1.228 22 H -0.210 1.210 23 C 0.010 3.990 24 C -0.156 4.156 25 C -0.107 4.107 26 H 0.100 0.900 27 C -0.194 4.194 28 S 0.509 5.491 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.203 0.797 35 H 0.240 0.760 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.054 0.946 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.437 -11.920 3.613 22.251 hybrid contribution 0.588 1.420 -1.517 2.160 sum -17.850 -10.500 2.095 20.815 Atomic orbital electron populations 1.23040 0.77880 1.04405 1.01745 1.87915 1.22578 1.26476 1.95828 1.21047 0.82033 0.86448 1.04758 1.27597 1.02166 1.02097 0.91594 1.66202 1.04573 1.16578 1.32272 1.22210 0.91068 0.96230 0.95763 1.25881 0.98840 1.19130 0.99016 1.16969 0.86196 0.76335 0.83157 1.90790 1.45750 1.52586 1.56219 1.45619 1.09959 1.72222 1.05170 1.21624 0.81804 0.97594 0.96084 0.91251 1.20886 0.91828 0.89029 0.93975 1.44166 1.65690 1.16828 1.05684 1.19395 1.07309 0.94372 1.16997 0.91112 1.25686 0.95826 1.00273 1.02603 1.70153 1.13866 1.42702 1.31145 0.85602 0.77973 0.80279 0.78297 1.19235 1.22807 1.21042 1.21159 0.97573 0.94400 0.85838 1.22041 0.98464 0.95183 0.99955 1.21351 1.01269 0.95651 0.92444 0.89962 1.21781 1.00500 0.94360 1.02785 1.83470 0.93939 1.62357 1.09332 0.88239 0.91843 0.92634 0.87589 0.88736 0.79709 0.76038 0.93284 0.98001 0.94619 0.96667 0.92315 0.88664 0.92303 0.93019 0.90203 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.66 10.69 -148.98 -1.59 -9.25 16 3 C 0.14 2.37 6.51 71.24 0.46 2.83 16 4 C 0.04 1.00 7.02 88.46 0.62 1.62 16 5 N -0.48 -14.64 10.51 -190.29 -2.00 -16.64 16 6 C 0.11 3.51 11.09 84.23 0.93 4.45 16 7 C -0.30 -10.32 6.48 23.88 0.15 -10.16 16 8 C 0.59 23.56 7.75 86.45 0.67 24.23 16 9 O -0.57 -27.32 16.53 -4.33 -0.07 -27.39 16 10 N -0.68 -24.47 4.25 -446.13 -1.90 -26.37 16 11 C 0.13 5.11 2.24 45.07 0.10 5.21 16 12 H 0.07 2.77 7.58 -2.39 -0.02 2.76 16 13 C 0.17 8.35 4.90 86.37 0.42 8.78 16 14 N -0.60 -28.75 2.91 -699.07 -2.04 -30.79 16 15 C -0.25 -13.42 9.58 84.03 0.81 -12.61 16 16 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 17 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 18 N -0.93 -57.36 11.20 21.65 0.24 -57.12 16 19 Si 0.95 46.22 29.59 68.60 2.03 48.25 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 22 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 23 C 0.14 5.04 6.50 86.36 0.56 5.60 16 24 C -0.12 -3.22 5.23 30.78 0.16 -3.06 16 25 C -0.09 -2.51 2.48 -10.66 -0.03 -2.53 16 26 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 27 C -0.14 -2.99 9.05 71.98 0.65 -2.34 16 28 S 0.25 6.29 22.31 -56.49 -1.26 5.03 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.19 6.03 8.06 -2.91 -0.02 6.00 16 35 H 0.40 12.60 5.83 -92.71 -0.54 12.06 16 36 H 0.05 2.90 6.06 -2.39 -0.01 2.89 16 37 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 38 H 0.24 14.94 8.31 -92.71 -0.77 14.16 16 39 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.06 1.57 6.41 -2.39 -0.02 1.55 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 1.14 7.54 -2.39 -0.02 1.12 16 Total: -1.00 -75.08 379.23 1.07 -74.01 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.46 Total: 19.07 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 7.19 Total: 21.18 kcal Atomic # 7 Polarization: -125.22 SS G_CDS: -5.69 Total: -130.91 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.66 Total: -36.64 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 6.29 SS G_CDS: -1.26 Total: 5.03 kcal Total: -75.08 1.07 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968692980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.158 kcal (2) G-P(sol) polarization free energy of solvation -75.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds