Wall clock time and date at job start Sat Apr 11 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99897 * 2 1 4 4 C 1.50701 * 109.46829 * 180.02562 * 3 2 1 5 5 N 1.28648 * 124.72255 * 90.25523 * 4 3 2 6 6 C 1.33557 * 115.76517 * 180.22419 * 5 4 3 7 7 C 1.47271 * 123.13904 * 179.82663 * 6 5 4 8 8 O 1.21636 * 119.99706 * 179.70500 * 7 6 5 9 9 N 1.34771 * 120.00013 * 359.70204 * 7 6 5 10 10 C 1.46499 * 119.99893 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.49953 * 324.93658 * 10 9 7 12 12 C 1.53198 * 109.49844 * 84.99641 * 10 9 7 13 13 N 1.46927 * 108.77162 * 65.31990 * 12 10 9 14 14 C 1.36944 * 120.62668 * 233.62769 * 13 12 10 15 15 H 1.08004 * 119.99606 * 152.60958 * 14 13 12 16 16 C 1.38807 * 120.00306 * 332.61320 * 14 13 12 17 17 N 1.31617 * 120.00175 * 159.35523 * 16 14 13 18 18 Si 1.86804 * 119.99716 * 339.36323 * 16 14 13 19 19 H 1.48501 * 109.47294 * 92.87947 * 18 16 14 20 20 H 1.48497 * 109.46818 * 212.87970 * 18 16 14 21 21 H 1.48501 * 109.46988 * 332.87820 * 18 16 14 22 22 C 1.46927 * 118.74109 * 53.60786 * 13 12 10 23 23 C 1.53189 * 108.77442 * 306.38954 * 22 13 12 24 24 C 1.53039 * 109.31280 * 54.63825 * 23 22 13 25 25 H 1.08995 * 109.46010 * 58.65318 * 24 23 22 26 26 C 1.53001 * 109.46071 * 178.61439 * 24 23 22 27 27 C 1.35210 * 113.71851 * 359.54962 * 6 5 4 28 28 S 1.70773 * 124.71674 * 270.01724 * 4 3 2 29 29 H 1.08995 * 109.47268 * 60.00208 * 1 2 3 30 30 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47236 * 300.00344 * 1 2 3 32 32 H 1.08994 * 109.47027 * 59.99907 * 3 2 1 33 33 H 1.08998 * 109.46898 * 299.99872 * 3 2 1 34 34 H 0.96996 * 120.00093 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.58679 * 185.10012 * 12 10 9 36 36 H 1.08989 * 109.58614 * 305.53195 * 12 10 9 37 37 H 0.96998 * 119.99777 * 180.02562 * 17 16 14 38 38 H 1.09008 * 109.58263 * 186.60695 * 22 13 12 39 39 H 1.08997 * 109.70783 * 66.25139 * 22 13 12 40 40 H 1.09001 * 109.49748 * 294.68328 * 23 22 13 41 41 H 1.08998 * 109.49602 * 174.58915 * 23 22 13 42 42 H 1.08998 * 109.47334 * 180.02562 * 26 24 23 43 43 H 1.09000 * 109.46657 * 300.06623 * 26 24 23 44 44 H 1.08998 * 109.46990 * 60.06629 * 26 24 23 45 45 H 1.08001 * 125.58697 * 180.22923 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2429 1.1335 -1.0583 6 6 5.5577 1.0236 -0.8509 7 6 6.5415 0.9462 -1.9442 8 8 7.7272 0.8523 -1.6897 9 7 6.1279 0.9794 -3.2264 10 6 7.1065 0.9018 -4.3139 11 1 8.0186 1.4214 -4.0203 12 6 7.4273 -0.5668 -4.6094 13 7 6.2172 -1.2202 -5.1266 14 6 5.7406 -2.3654 -4.5465 15 1 4.6875 -2.5993 -4.5988 16 6 6.6108 -3.2257 -3.8912 17 7 6.1472 -4.0824 -3.0060 18 14 8.4401 -3.1672 -4.2654 19 1 9.1126 -2.2541 -3.3066 20 1 9.0152 -4.5303 -4.1374 21 1 8.6465 -2.6708 -5.6497 22 6 5.5281 -0.6213 -6.2778 23 6 5.2287 0.8478 -5.9636 24 6 6.5270 1.5560 -5.5702 25 1 7.2457 1.4761 -6.3858 26 6 6.2376 3.0319 -5.2891 27 6 5.9017 0.9961 0.4564 28 16 4.4826 1.1090 1.4027 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 5.1824 1.0546 -3.4293 35 1 8.2207 -0.6247 -5.3545 36 1 7.7469 -1.0625 -3.6929 37 1 6.7555 -4.6832 -2.5479 38 1 4.5946 -1.1532 -6.4620 39 1 6.1645 -0.6839 -7.1605 40 1 4.5182 0.9060 -5.1389 41 1 4.8042 1.3290 -6.8446 42 1 7.1623 3.5366 -5.0093 43 1 5.8249 3.4980 -6.1838 44 1 5.5194 3.1122 -4.4731 45 1 6.9081 0.9157 0.8399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968695539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:05 Heat of formation + Delta-G solvation = -7.084630 kcal Electronic energy + Delta-G solvation = -28542.735544 eV Core-core repulsion = 24688.271417 eV Total energy + Delta-G solvation = -3854.464127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.37480 -39.15148 -37.97171 -37.30947 -34.23145 -32.82911 -31.60650 -31.29081 -29.66467 -28.21338 -27.58549 -26.18145 -24.93501 -23.79719 -22.64147 -21.38530 -21.15767 -19.77817 -18.93125 -18.58629 -16.76745 -16.73873 -16.46289 -15.96823 -15.75444 -15.32104 -15.10525 -14.76014 -14.43855 -13.98685 -13.91164 -13.60851 -13.44876 -13.30677 -13.07486 -12.82656 -12.68404 -12.38425 -12.09254 -12.00604 -11.86059 -11.62435 -11.58099 -11.40746 -11.08040 -10.55051 -10.47443 -10.20484 -9.98512 -9.90543 -9.81805 -9.77665 -9.62152 -9.56625 -9.34692 -8.92853 -8.64589 -8.31191 -6.86780 -5.84975 -3.20388 0.53695 1.23052 1.62181 2.10497 3.42832 3.47132 3.56337 3.58240 3.74917 3.84320 4.21114 4.63838 4.71087 4.99817 5.02223 5.06102 5.11509 5.14225 5.17794 5.24201 5.25961 5.29674 5.41042 5.52071 5.53955 5.79392 5.80736 5.88803 5.97148 6.03146 6.13606 6.17112 6.27492 6.37313 6.44382 6.56916 6.67465 6.74947 6.87085 6.89083 7.07064 7.47560 8.03713 8.10226 8.41900 8.69517 9.02499 9.82124 10.18392 11.30731 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010013 B = 0.004438 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.566700 B = 6307.565622 C = 6705.576254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.144 3.856 4 C 0.015 3.985 5 N -0.416 5.416 6 C 0.023 3.977 7 C 0.594 3.406 8 O -0.545 6.545 9 N -0.678 5.678 10 C 0.133 3.867 11 H 0.081 0.919 12 C 0.113 3.887 13 N -0.600 5.600 14 C -0.256 4.256 15 H 0.084 0.916 16 C 0.027 3.973 17 N -0.906 5.906 18 Si 0.875 3.125 19 H -0.284 1.284 20 H -0.304 1.304 21 H -0.271 1.271 22 C 0.147 3.853 23 C -0.132 4.132 24 C -0.093 4.093 25 H 0.080 0.920 26 C -0.144 4.144 27 C -0.222 4.222 28 S 0.220 5.780 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.408 0.592 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.023 0.977 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 16.508 5.847 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C 0.064 3.936 4 C -0.265 4.265 5 N -0.133 5.133 6 C -0.112 4.112 7 C 0.377 3.623 8 O -0.423 6.423 9 N -0.328 5.328 10 C 0.026 3.974 11 H 0.099 0.901 12 C -0.014 4.014 13 N -0.324 5.324 14 C -0.384 4.384 15 H 0.101 0.899 16 C -0.172 4.172 17 N -0.549 5.549 18 Si 0.705 3.295 19 H -0.212 1.212 20 H -0.233 1.233 21 H -0.196 1.196 22 C 0.021 3.979 23 C -0.171 4.171 24 C -0.112 4.112 25 H 0.098 0.902 26 C -0.202 4.202 27 C -0.364 4.364 28 S 0.476 5.524 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.245 0.755 35 H 0.051 0.949 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.283 16.150 6.619 19.320 hybrid contribution 1.141 -0.116 -0.930 1.477 sum -7.142 16.035 5.688 18.452 Atomic orbital electron populations 1.22796 0.80150 1.03436 1.00020 1.88046 1.20136 1.26010 1.95428 1.20722 0.84433 0.86244 1.02219 1.26528 1.00616 1.07352 0.91996 1.66835 1.03232 1.12102 1.31140 1.20486 0.89828 1.07149 0.93737 1.16929 0.86454 0.76782 0.82123 1.90780 1.16251 1.51403 1.83913 1.45598 1.11410 1.71522 1.04239 1.21571 0.91589 0.98511 0.85718 0.90078 1.21790 0.89742 0.91208 0.98615 1.44282 1.28787 1.27061 1.32250 1.18829 0.93561 0.96194 1.29829 0.89882 1.25231 0.97476 0.96508 0.98002 1.69844 1.34868 1.24641 1.25534 0.87046 0.87763 0.75603 0.79075 1.21188 1.23257 1.19600 1.20943 0.96571 0.91086 0.89341 1.22095 0.96367 0.98050 1.00614 1.21305 0.98572 0.94346 0.97010 0.90213 1.21839 1.01383 0.95730 1.01223 1.26633 1.05981 1.06881 0.96918 1.82584 0.94965 1.63621 1.11254 0.93618 0.89051 0.93945 0.91015 0.90049 0.75495 0.94948 0.90140 0.92962 0.91857 0.95941 0.92079 0.92272 0.93037 0.92870 0.92752 0.79269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.99 10.69 -35.23 -0.38 -5.37 16 3 C 0.14 1.57 6.51 36.01 0.23 1.80 16 4 C 0.01 0.20 6.97 -13.61 -0.09 0.11 16 5 N -0.42 -7.16 10.12 -8.51 -0.09 -7.24 16 6 C 0.02 0.43 6.70 -84.52 -0.57 -0.14 16 7 C 0.59 12.41 7.76 -12.59 -0.10 12.31 16 8 O -0.55 -12.66 16.38 5.25 0.09 -12.57 16 9 N -0.68 -13.22 4.25 -54.81 -0.23 -13.45 16 10 C 0.13 2.52 2.24 -67.81 -0.15 2.37 16 11 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 12 C 0.11 2.63 3.80 -3.71 -0.01 2.61 16 13 N -0.60 -14.49 2.69 -172.31 -0.46 -14.95 16 14 C -0.26 -7.37 10.03 -15.06 -0.15 -7.52 16 15 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 16 C 0.03 0.81 5.23 -17.43 -0.09 0.72 16 17 N -0.91 -29.10 13.97 55.49 0.78 -28.33 16 18 Si 0.87 23.84 24.35 -169.99 -4.14 19.71 16 19 H -0.28 -7.85 6.62 56.52 0.37 -7.48 16 20 H -0.30 -8.37 7.11 56.52 0.40 -7.97 16 21 H -0.27 -7.12 6.64 56.52 0.38 -6.75 16 22 C 0.15 2.86 6.52 -3.71 -0.02 2.83 16 23 C -0.13 -2.08 5.20 -26.61 -0.14 -2.22 16 24 C -0.09 -1.42 2.48 -90.58 -0.22 -1.65 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 C -0.14 -1.83 9.05 37.16 0.34 -1.50 16 27 C -0.22 -3.43 10.62 29.65 0.31 -3.11 16 28 S 0.22 2.60 22.92 -107.50 -2.46 0.13 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.41 7.68 6.15 -40.82 -0.25 7.43 16 35 H 0.03 0.74 7.08 -51.93 -0.37 0.37 16 36 H 0.08 2.18 4.49 -51.94 -0.23 1.95 16 37 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 38 H 0.06 1.24 7.93 -51.92 -0.41 0.83 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 1.01 6.40 -51.93 -0.33 0.68 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 45 H 0.19 2.69 8.03 -52.49 -0.42 2.27 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -36.28 372.83 -7.48 -43.76 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.64 Total: 4.68 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 0.44 Total: 8.03 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.01 Total: -63.98 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.29 Total: -17.94 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.14 Total: 19.71 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.46 Total: 0.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.28 -7.48 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968695539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.672 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds