Wall clock time and date at job start Sat Apr 11 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99897 * 2 1 4 4 C 1.50701 * 109.46829 * 180.02562 * 3 2 1 5 5 N 1.28648 * 124.72255 * 90.25523 * 4 3 2 6 6 C 1.33557 * 115.76517 * 180.22419 * 5 4 3 7 7 C 1.47271 * 123.13904 * 179.82663 * 6 5 4 8 8 O 1.21636 * 119.99706 * 179.70500 * 7 6 5 9 9 N 1.34771 * 120.00013 * 359.70204 * 7 6 5 10 10 C 1.46499 * 119.99893 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.49953 * 324.93658 * 10 9 7 12 12 C 1.53198 * 109.49844 * 84.99641 * 10 9 7 13 13 N 1.46927 * 108.77162 * 65.31990 * 12 10 9 14 14 C 1.36944 * 120.62668 * 233.62769 * 13 12 10 15 15 H 1.08004 * 119.99606 * 152.60958 * 14 13 12 16 16 C 1.38807 * 120.00306 * 332.61320 * 14 13 12 17 17 N 1.31617 * 120.00175 * 159.35523 * 16 14 13 18 18 Si 1.86804 * 119.99716 * 339.36323 * 16 14 13 19 19 H 1.48501 * 109.47294 * 92.87947 * 18 16 14 20 20 H 1.48497 * 109.46818 * 212.87970 * 18 16 14 21 21 H 1.48501 * 109.46988 * 332.87820 * 18 16 14 22 22 C 1.46927 * 118.74109 * 53.60786 * 13 12 10 23 23 C 1.53189 * 108.77442 * 306.38954 * 22 13 12 24 24 C 1.53039 * 109.31280 * 54.63825 * 23 22 13 25 25 H 1.08995 * 109.46010 * 58.65318 * 24 23 22 26 26 C 1.53001 * 109.46071 * 178.61439 * 24 23 22 27 27 C 1.35210 * 113.71851 * 359.54962 * 6 5 4 28 28 S 1.70773 * 124.71674 * 270.01724 * 4 3 2 29 29 H 1.08995 * 109.47268 * 60.00208 * 1 2 3 30 30 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47236 * 300.00344 * 1 2 3 32 32 H 1.08994 * 109.47027 * 59.99907 * 3 2 1 33 33 H 1.08998 * 109.46898 * 299.99872 * 3 2 1 34 34 H 0.96996 * 120.00093 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.58679 * 185.10012 * 12 10 9 36 36 H 1.08989 * 109.58614 * 305.53195 * 12 10 9 37 37 H 0.96998 * 119.99777 * 180.02562 * 17 16 14 38 38 H 1.09008 * 109.58263 * 186.60695 * 22 13 12 39 39 H 1.08997 * 109.70783 * 66.25139 * 22 13 12 40 40 H 1.09001 * 109.49748 * 294.68328 * 23 22 13 41 41 H 1.08998 * 109.49602 * 174.58915 * 23 22 13 42 42 H 1.08998 * 109.47334 * 180.02562 * 26 24 23 43 43 H 1.09000 * 109.46657 * 300.06623 * 26 24 23 44 44 H 1.08998 * 109.46990 * 60.06629 * 26 24 23 45 45 H 1.08001 * 125.58697 * 180.22923 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2429 1.1335 -1.0583 6 6 5.5577 1.0236 -0.8509 7 6 6.5415 0.9462 -1.9442 8 8 7.7272 0.8523 -1.6897 9 7 6.1279 0.9794 -3.2264 10 6 7.1065 0.9018 -4.3139 11 1 8.0186 1.4214 -4.0203 12 6 7.4273 -0.5668 -4.6094 13 7 6.2172 -1.2202 -5.1266 14 6 5.7406 -2.3654 -4.5465 15 1 4.6875 -2.5993 -4.5988 16 6 6.6108 -3.2257 -3.8912 17 7 6.1472 -4.0824 -3.0060 18 14 8.4401 -3.1672 -4.2654 19 1 9.1126 -2.2541 -3.3066 20 1 9.0152 -4.5303 -4.1374 21 1 8.6465 -2.6708 -5.6497 22 6 5.5281 -0.6213 -6.2778 23 6 5.2287 0.8478 -5.9636 24 6 6.5270 1.5560 -5.5702 25 1 7.2457 1.4761 -6.3858 26 6 6.2376 3.0319 -5.2891 27 6 5.9017 0.9961 0.4564 28 16 4.4826 1.1090 1.4027 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 5.1824 1.0546 -3.4293 35 1 8.2207 -0.6247 -5.3545 36 1 7.7469 -1.0625 -3.6929 37 1 6.7555 -4.6832 -2.5479 38 1 4.5946 -1.1532 -6.4620 39 1 6.1645 -0.6839 -7.1605 40 1 4.5182 0.9060 -5.1389 41 1 4.8042 1.3290 -6.8446 42 1 7.1623 3.5366 -5.0093 43 1 5.8249 3.4980 -6.1838 44 1 5.5194 3.1122 -4.4731 45 1 6.9081 0.9157 0.8399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968695539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:04 Heat of formation + Delta-G solvation = -35.230590 kcal Electronic energy + Delta-G solvation = -28543.956044 eV Core-core repulsion = 24688.271417 eV Total energy + Delta-G solvation = -3855.684628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.74457 -40.52121 -39.15351 -38.58486 -36.06278 -34.40571 -33.32290 -32.70650 -31.22500 -29.18373 -29.17854 -27.06830 -26.27217 -25.55085 -24.13498 -22.85891 -22.61465 -21.03137 -20.43660 -19.95330 -18.77772 -17.78420 -17.60863 -17.25054 -17.06613 -16.70575 -16.49264 -16.26620 -15.95412 -15.47572 -15.26969 -15.15933 -14.92538 -14.77394 -14.65752 -14.33486 -13.84264 -13.68451 -13.67492 -13.19514 -13.14970 -13.05155 -12.92044 -12.55884 -12.43386 -12.33899 -12.22467 -11.84952 -11.71559 -11.42508 -11.22461 -11.16855 -10.98063 -10.78079 -10.77202 -10.66752 -10.19820 -9.89319 -8.89747 -8.19893 -5.48590 -0.61923 0.18009 0.49485 0.80437 1.26892 1.29334 1.38778 2.10033 2.37199 2.38991 2.69947 3.01340 3.21783 3.34066 3.68495 3.76640 3.90703 3.99951 4.03196 4.16351 4.18559 4.30225 4.41482 4.47785 4.53783 4.59979 4.61547 4.62289 4.66490 4.76659 4.84982 4.86136 4.91493 4.99061 5.09281 5.16503 5.18343 5.39556 5.47255 5.55934 5.84965 6.09356 6.12864 6.26782 6.60405 6.89694 7.14585 7.61111 8.01384 8.99808 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010013 B = 0.004438 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.566700 B = 6307.565622 C = 6705.576254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.140 3.860 4 C -0.005 4.005 5 N -0.447 5.447 6 C -0.014 4.014 7 C 0.583 3.417 8 O -0.582 6.582 9 N -0.674 5.674 10 C 0.134 3.866 11 H 0.081 0.919 12 C 0.111 3.889 13 N -0.611 5.611 14 C -0.231 4.231 15 H 0.053 0.947 16 C -0.033 4.033 17 N -0.955 5.955 18 Si 0.935 3.065 19 H -0.297 1.297 20 H -0.309 1.309 21 H -0.252 1.252 22 C 0.139 3.861 23 C -0.121 4.121 24 C -0.086 4.086 25 H 0.097 0.903 26 C -0.136 4.136 27 C -0.241 4.241 28 S 0.326 5.674 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.410 0.590 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.257 0.743 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.859 19.313 5.390 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C 0.061 3.939 4 C -0.284 4.284 5 N -0.165 5.165 6 C -0.150 4.150 7 C 0.368 3.632 8 O -0.463 6.463 9 N -0.323 5.323 10 C 0.028 3.972 11 H 0.099 0.901 12 C -0.015 4.015 13 N -0.336 5.336 14 C -0.361 4.361 15 H 0.070 0.930 16 C -0.227 4.227 17 N -0.601 5.601 18 Si 0.766 3.234 19 H -0.225 1.225 20 H -0.238 1.238 21 H -0.176 1.176 22 C 0.015 3.985 23 C -0.160 4.160 24 C -0.104 4.104 25 H 0.115 0.885 26 C -0.193 4.193 27 C -0.384 4.384 28 S 0.584 5.416 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.248 0.752 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -9.409 19.009 6.114 22.074 hybrid contribution 1.332 -0.945 -0.699 1.776 sum -8.077 18.064 5.416 20.515 Atomic orbital electron populations 1.22990 0.78095 1.03975 1.01829 1.87973 1.22519 1.27476 1.95806 1.21016 0.82313 0.85896 1.04645 1.27250 1.02390 1.06051 0.92677 1.66814 1.02813 1.13763 1.33070 1.20302 0.90354 1.10398 0.93902 1.17449 0.86666 0.75990 0.83128 1.90730 1.17792 1.53231 1.84571 1.45623 1.11570 1.70913 1.04169 1.21564 0.92216 0.95855 0.87579 0.90059 1.21746 0.89529 0.93473 0.96784 1.44374 1.29306 1.26054 1.33817 1.18764 0.92164 0.97082 1.28113 0.92969 1.25793 1.01146 0.97116 0.98689 1.69969 1.35969 1.26561 1.27625 0.86068 0.83277 0.74743 0.79335 1.22514 1.23842 1.17554 1.21207 0.96044 0.93146 0.88131 1.21992 0.96547 0.95471 1.01944 1.21316 0.98350 0.95640 0.95141 0.88484 1.21757 1.01637 0.93614 1.02272 1.26966 1.08293 1.05930 0.97162 1.82122 0.91095 1.60509 1.07905 0.92764 0.89271 0.91128 0.86819 0.89350 0.75203 0.93970 0.94497 0.93434 0.92547 0.94030 0.93251 0.88179 0.92573 0.90057 0.93539 0.78917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.51 10.69 -148.98 -1.59 -12.10 16 3 C 0.14 2.76 6.51 71.24 0.46 3.23 16 4 C 0.00 -0.13 6.97 88.58 0.62 0.49 16 5 N -0.45 -15.50 10.12 -180.83 -1.83 -17.33 16 6 C -0.01 -0.52 6.70 40.56 0.27 -0.25 16 7 C 0.58 25.30 7.76 86.62 0.67 25.97 16 8 O -0.58 -28.27 16.38 -4.14 -0.07 -28.34 16 9 N -0.67 -26.70 4.25 -445.56 -1.89 -28.60 16 10 C 0.13 5.04 2.24 45.07 0.10 5.14 16 11 H 0.08 3.06 7.58 -2.39 -0.02 3.04 16 12 C 0.11 5.16 3.80 86.36 0.33 5.49 16 13 N -0.61 -29.50 2.69 -699.08 -1.88 -31.38 16 14 C -0.23 -13.71 10.03 84.03 0.84 -12.87 16 15 H 0.05 3.37 8.06 -2.91 -0.02 3.34 16 16 C -0.03 -2.06 5.23 84.86 0.44 -1.62 16 17 N -0.95 -64.08 13.97 21.65 0.30 -63.78 16 18 Si 0.94 51.28 24.35 68.60 1.67 52.95 16 19 H -0.30 -16.73 6.62 99.48 0.66 -16.07 16 20 H -0.31 -17.00 7.11 99.48 0.71 -16.30 16 21 H -0.25 -12.77 6.64 99.48 0.66 -12.11 16 22 C 0.14 5.17 6.52 86.36 0.56 5.73 16 23 C -0.12 -3.45 5.20 30.67 0.16 -3.29 16 24 C -0.09 -2.37 2.48 -10.77 -0.03 -2.39 16 25 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 26 C -0.14 -2.97 9.05 71.98 0.65 -2.32 16 27 C -0.24 -7.46 10.62 67.12 0.71 -6.74 16 28 S 0.33 7.06 22.92 -56.49 -1.29 5.77 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.41 15.66 6.15 -92.71 -0.57 15.09 16 35 H 0.04 1.87 7.08 -2.39 -0.02 1.85 16 36 H 0.04 2.05 4.49 -2.39 -0.01 2.04 16 37 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 38 H 0.06 2.15 7.93 -2.38 -0.02 2.14 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.55 6.40 -2.39 -0.02 1.53 16 41 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.10 7.54 -2.39 -0.02 1.08 16 45 H 0.19 5.61 8.03 -2.91 -0.02 5.59 16 Total: -1.00 -84.37 372.83 0.81 -83.56 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.35 Total: 21.03 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 7.05 Total: 18.21 kcal Atomic # 7 Polarization: -135.79 SS G_CDS: -5.30 Total: -141.09 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.66 Total: -40.44 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 1.67 Total: 52.95 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -1.29 Total: 5.77 kcal Total: -84.37 0.81 -83.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968695539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.325 kcal (2) G-P(sol) polarization free energy of solvation -84.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds