Wall clock time and date at job start Sat Apr 11 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99613 * 2 1 4 4 C 1.50713 * 109.47110 * 179.97438 * 3 2 1 5 5 N 1.29022 * 124.91182 * 89.99941 * 4 3 2 6 6 C 1.31782 * 117.12213 * 180.02562 * 5 4 3 7 7 C 1.50699 * 122.75267 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46973 * 305.02424 * 7 6 5 9 9 O 1.21275 * 120.00021 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99836 * 179.97438 * 8 7 6 11 11 C 1.47418 * 125.64845 * 0.04868 * 10 8 7 12 12 C 1.54906 * 104.83216 * 204.08908 * 11 10 8 13 13 H 1.08999 * 111.00570 * 204.87954 * 12 11 10 14 14 N 1.46503 * 111.00660 * 81.06143 * 12 11 10 15 15 C 1.36937 * 119.99923 * 86.45255 * 14 12 11 16 16 H 1.08003 * 119.99913 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99980 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00426 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47353 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47008 * 120.00397 * 19 17 15 22 22 H 1.48500 * 109.47199 * 240.00194 * 19 17 15 23 23 C 1.55155 * 101.58328 * 322.99015 * 12 11 10 24 24 C 1.47019 * 125.64589 * 179.97438 * 10 8 7 25 25 H 1.09008 * 109.87958 * 59.41260 * 24 10 8 26 26 C 1.52997 * 109.88752 * 298.39914 * 24 10 8 27 27 C 1.33648 * 114.49790 * 0.23211 * 6 5 4 28 28 S 1.70972 * 124.91430 * 269.99813 * 4 3 2 29 29 H 1.08996 * 109.47248 * 60.00647 * 1 2 3 30 30 H 1.09008 * 109.46659 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47358 * 299.99822 * 1 2 3 32 32 H 1.08999 * 109.47769 * 60.00305 * 3 2 1 33 33 H 1.08996 * 109.47550 * 299.99509 * 3 2 1 34 34 H 1.09001 * 109.47184 * 185.02607 * 7 6 5 35 35 H 1.09000 * 109.46668 * 65.02496 * 7 6 5 36 36 H 1.09001 * 110.36828 * 322.92610 * 11 10 8 37 37 H 1.08995 * 110.37150 * 85.13974 * 11 10 8 38 38 H 0.96998 * 120.00290 * 266.45376 * 14 12 11 39 39 H 0.96993 * 120.00326 * 179.97438 * 18 17 15 40 40 H 1.09007 * 110.71881 * 277.14057 * 23 12 11 41 41 H 1.09000 * 110.72534 * 153.86738 * 23 12 11 42 42 H 1.09002 * 109.47153 * 61.45267 * 26 24 10 43 43 H 1.09001 * 109.46832 * 301.45458 * 26 24 10 44 44 H 1.09004 * 109.47261 * 181.45439 * 26 24 10 45 45 H 1.07998 * 126.03145 * 179.77044 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2491 1.1281 -1.0571 6 6 5.5506 1.0246 -0.8779 7 6 6.5275 0.9465 -2.0227 8 6 6.1433 -0.1905 -2.9342 9 8 5.1716 -0.8700 -2.6795 10 7 6.8790 -0.4514 -4.0329 11 6 8.0787 0.2913 -4.4600 12 6 8.1706 0.0515 -5.9876 13 1 9.1963 0.1622 -6.3394 14 7 7.2692 0.9483 -6.7152 15 6 7.6888 2.2036 -7.0664 16 1 8.6844 2.5323 -6.8074 17 6 6.8345 3.0535 -7.7554 18 7 5.6210 2.6532 -8.0706 19 14 7.4072 4.7657 -8.2351 20 1 8.8019 4.9701 -7.7680 21 1 7.3543 4.9096 -9.7122 22 1 6.5210 5.7782 -7.6070 23 6 7.6991 -1.4224 -6.1005 24 6 6.6188 -1.5249 -5.0032 25 1 5.6290 -1.3965 -5.4414 26 6 6.7082 -2.8859 -4.3101 27 6 5.9327 0.9892 0.4023 28 16 4.4875 1.1097 1.4030 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 7.5311 0.7764 -1.6329 35 1 6.5083 1.8824 -2.5812 36 1 7.9617 1.3543 -4.2492 37 1 8.9647 -0.0987 -3.9591 38 1 6.3751 0.6530 -6.9482 39 1 5.0240 3.2472 -8.5517 40 1 8.5221 -2.1073 -5.8960 41 1 7.2702 -1.6159 -7.0837 42 1 5.9511 -2.9459 -3.5282 43 1 7.6974 -3.0040 -3.8678 44 1 6.5398 -3.6774 -5.0404 45 1 6.9481 0.9040 0.7601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989658392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:29 Heat of formation + Delta-G solvation = -12.829934 kcal Electronic energy + Delta-G solvation = -27368.070858 eV Core-core repulsion = 23513.357596 eV Total energy + Delta-G solvation = -3854.713262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.29779 -39.36656 -37.95361 -37.07392 -33.93074 -32.76325 -31.47118 -31.25211 -29.02504 -28.37376 -27.76569 -26.15730 -25.40646 -23.77426 -23.16634 -21.75973 -20.06260 -19.70139 -18.73916 -17.58383 -17.22411 -16.80420 -16.65230 -16.03896 -15.83798 -15.67963 -14.99111 -14.55896 -14.43714 -13.96766 -13.87325 -13.59363 -13.52008 -13.17748 -13.01602 -12.70035 -12.59895 -12.36220 -12.15200 -12.10921 -11.76194 -11.64984 -11.57663 -11.33392 -11.10733 -10.94474 -10.74817 -10.59824 -10.27463 -9.97155 -9.96675 -9.72164 -9.56870 -9.47490 -9.30504 -9.02386 -8.76885 -8.10760 -7.02021 -5.81394 -3.11911 0.60582 1.30914 1.66123 2.68532 3.13012 3.39922 3.45033 3.48090 3.51949 3.62956 4.17719 4.53634 4.69989 4.85239 4.93561 5.04885 5.11527 5.15509 5.18162 5.20184 5.28745 5.30503 5.41836 5.47930 5.53177 5.55421 5.62059 5.72895 5.76674 5.85742 5.93367 6.02159 6.10313 6.23396 6.28203 6.45557 6.49032 6.64535 6.74047 6.84902 6.91639 7.64752 7.81902 8.06632 8.35735 8.69115 9.47519 10.03713 10.38063 11.40587 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.003165 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.817794 B = 8844.067355 C = 9748.411046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.142 3.858 4 C 0.044 3.956 5 N -0.420 5.420 6 C 0.096 3.904 7 C -0.065 4.065 8 C 0.534 3.466 9 O -0.532 6.532 10 N -0.601 5.601 11 C 0.068 3.932 12 C 0.169 3.831 13 H 0.070 0.930 14 N -0.713 5.713 15 C -0.247 4.247 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.927 5.927 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.137 4.137 24 C 0.141 3.859 25 H 0.072 0.928 26 C -0.158 4.158 27 C -0.253 4.253 28 S 0.122 5.878 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 -5.396 18.875 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C 0.062 3.938 4 C -0.235 4.235 5 N -0.134 5.134 6 C -0.037 4.037 7 C -0.107 4.107 8 C 0.322 3.678 9 O -0.408 6.408 10 N -0.335 5.335 11 C -0.058 4.058 12 C 0.057 3.943 13 H 0.087 0.913 14 N -0.353 5.353 15 C -0.378 4.378 16 H 0.091 0.909 17 C -0.205 4.205 18 N -0.574 5.574 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.176 4.176 24 C 0.037 3.963 25 H 0.090 0.910 26 C -0.217 4.217 27 C -0.392 4.392 28 S 0.376 5.624 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.896 -5.699 19.599 20.499 hybrid contribution 0.427 1.136 -1.072 1.620 sum -1.469 -4.563 18.527 19.137 Atomic orbital electron populations 1.22788 0.80258 1.03211 1.00181 1.87999 1.20057 1.26267 1.95460 1.20756 0.84786 0.86048 1.02217 1.26474 1.00200 1.05834 0.90958 1.65953 1.04428 1.11977 1.31068 1.19645 0.89889 1.00945 0.93207 1.20235 0.97005 1.00306 0.93193 1.19737 0.82481 0.84935 0.80668 1.90701 1.26594 1.50440 1.73085 1.48361 1.28881 1.32601 1.23630 1.23372 0.85872 0.96888 0.99672 1.21317 0.95306 0.88672 0.89042 0.91255 1.42351 1.14633 1.13115 1.65157 1.19249 0.98205 0.90293 1.30038 0.90937 1.24768 0.96082 0.98599 1.01086 1.69676 1.06730 1.36264 1.44718 0.86149 0.77675 0.84549 0.77952 1.20476 1.21835 1.21877 1.23027 0.97917 0.98173 0.98451 1.21423 0.99482 0.86550 0.88801 0.90983 1.22126 1.01918 0.96385 1.01232 1.26825 1.03294 1.13448 0.95668 1.83696 0.98134 1.67727 1.12837 0.93530 0.89236 0.93934 0.91127 0.89958 0.87642 0.86753 0.90307 0.92798 0.77983 0.93435 0.90791 0.89901 0.91662 0.93014 0.92181 0.80382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.12 10.69 -35.23 -0.38 -5.50 16 3 C 0.14 1.71 6.51 36.01 0.23 1.95 16 4 C 0.04 0.65 7.02 -13.45 -0.09 0.55 16 5 N -0.42 -7.43 9.68 -8.05 -0.08 -7.51 16 6 C 0.10 1.50 5.64 -84.22 -0.47 1.03 16 7 C -0.06 -0.98 5.20 -29.04 -0.15 -1.13 16 8 C 0.53 9.96 7.61 -10.98 -0.08 9.87 16 9 O -0.53 -11.70 14.48 5.56 0.08 -11.62 16 10 N -0.60 -10.55 3.06 -163.02 -0.50 -11.05 16 11 C 0.07 1.11 6.38 -2.53 -0.02 1.10 16 12 C 0.17 3.08 3.69 -65.78 -0.24 2.83 16 13 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 14 N -0.71 -17.01 5.27 -51.35 -0.27 -17.28 16 15 C -0.25 -6.51 9.98 -15.06 -0.15 -6.66 16 16 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 19 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 C -0.14 -2.14 6.05 -24.90 -0.15 -2.29 16 24 C 0.14 2.39 3.45 -66.95 -0.23 2.16 16 25 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 26 C -0.16 -2.35 9.10 37.16 0.34 -2.01 16 27 C -0.25 -3.11 11.07 29.12 0.32 -2.79 16 28 S 0.12 1.39 23.18 -107.50 -2.49 -1.10 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.11 1.20 8.03 -51.93 -0.42 0.78 16 35 H 0.11 1.76 7.85 -51.93 -0.41 1.36 16 36 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.39 10.18 7.82 -40.82 -0.32 9.86 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 0.96 7.85 -51.92 -0.41 0.55 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.11 6.88 -51.93 -0.36 0.75 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -35.09 388.15 -8.68 -43.77 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -6.92 Total: 8.94 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 0.32 Total: 5.69 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -0.12 Total: -62.86 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.30 Total: -17.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.49 Total: -1.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.09 -8.68 -43.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989658392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.942 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds