Wall clock time and date at job start Sat Apr 11 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00500 * 2 1 4 4 H 1.09002 * 109.46881 * 29.99433 * 3 2 1 5 5 C 1.52999 * 109.46877 * 270.00209 * 3 2 1 6 6 C 1.50696 * 109.47616 * 149.99886 * 3 2 1 7 7 N 1.29430 * 124.80193 * 45.02180 * 6 3 2 8 8 C 1.30949 * 117.36224 * 179.68615 * 7 6 3 9 9 C 1.35661 * 114.18807 * 0.53006 * 8 7 6 10 10 C 1.46684 * 126.13171 * 179.78399 * 9 8 7 11 11 O 1.21684 * 120.00410 * 179.69253 * 10 9 8 12 12 N 1.34779 * 119.99857 * 359.69065 * 10 9 8 13 13 C 1.46492 * 120.00542 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.88407 * 37.41881 * 13 12 10 15 15 C 1.54914 * 111.00284 * 273.54715 * 13 12 10 16 16 N 1.47420 * 104.83159 * 204.91262 * 15 13 12 17 17 C 1.36945 * 125.64792 * 204.08975 * 16 15 13 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47020 * 108.70626 * 24.35323 * 16 15 13 26 26 C 1.54337 * 107.26210 * 358.58837 * 25 16 15 27 27 H 1.09000 * 110.51945 * 96.45260 * 26 25 16 28 28 C 1.53002 * 110.99773 * 219.60002 * 26 25 16 29 29 S 1.70957 * 124.80549 * 225.00226 * 6 3 2 30 30 H 1.08998 * 109.47345 * 300.00235 * 1 2 3 31 31 H 1.09000 * 109.47261 * 59.99845 * 1 2 3 32 32 H 1.09003 * 109.47276 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47402 * 60.00097 * 5 3 2 34 34 H 1.09004 * 109.46872 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47184 * 299.99172 * 5 3 2 36 36 H 1.07999 * 122.90548 * 180.35153 * 8 7 6 37 37 H 0.97002 * 119.99907 * 359.97438 * 12 10 9 38 38 H 1.08999 * 110.37083 * 86.07223 * 15 13 12 39 39 H 1.08998 * 110.45606 * 323.79857 * 15 13 12 40 40 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.88406 * 118.12749 * 25 16 15 42 42 H 1.09001 * 109.88743 * 239.29401 * 25 16 15 43 43 H 1.09000 * 109.47012 * 173.78008 * 28 26 25 44 44 H 1.09000 * 109.47235 * 293.77429 * 28 26 25 45 45 H 1.08999 * 109.47449 * 53.78300 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7712 -1.4425 6 6 3.3386 1.2638 0.7104 7 7 4.2432 0.3553 0.5328 8 6 5.3499 0.4647 1.2241 9 6 5.3825 1.5364 2.0553 10 6 6.4864 1.9053 2.9480 11 8 6.3990 2.8987 3.6454 12 7 7.5975 1.1439 2.9960 13 6 8.6997 1.5119 3.8880 14 1 8.3214 1.9149 4.8275 15 6 9.6595 2.5147 3.2002 16 7 10.9527 2.3282 3.8828 17 6 11.9535 3.2594 3.9649 18 1 12.8677 3.0246 4.4897 19 6 11.7928 4.5048 3.3737 20 7 10.6783 4.7911 2.7345 21 14 13.1576 5.7753 3.4862 22 1 12.7418 7.0126 2.7782 23 1 13.4269 6.0874 4.9128 24 1 14.3894 5.2355 2.8565 25 6 10.9927 0.9747 4.4555 26 6 9.6396 0.3032 4.1387 27 1 9.7199 -0.3149 3.2445 28 6 9.1484 -0.5273 5.3261 29 16 3.8643 2.4103 1.8645 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2568 1.8014 -1.9563 34 1 2.6607 2.7672 -1.4425 35 1 2.8829 1.0774 -1.9563 36 1 6.1650 -0.2391 1.1420 37 1 7.6670 0.3518 2.4405 38 1 9.3025 3.5356 3.3361 39 1 9.7540 2.2849 2.1390 40 1 10.5659 5.6617 2.3217 41 1 11.8057 0.4054 4.0049 42 1 11.1320 1.0328 5.5350 43 1 8.1448 -0.8988 5.1193 44 1 9.8221 -1.3695 5.4839 45 1 9.1284 0.0946 6.2210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079701201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:48 Heat of formation + Delta-G solvation = -4.817008 kcal Electronic energy + Delta-G solvation = -26893.770936 eV Core-core repulsion = 23039.405141 eV Total energy + Delta-G solvation = -3854.365796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.28977 -39.33720 -38.27754 -37.43487 -34.00994 -32.95923 -32.51628 -30.37567 -30.08444 -27.65481 -27.13771 -26.12310 -25.60924 -23.74079 -23.14533 -21.71751 -20.24300 -20.10745 -19.22467 -18.41730 -17.41763 -16.91875 -16.47332 -15.94893 -15.71674 -15.56597 -15.06945 -14.80293 -14.46116 -14.12463 -13.92763 -13.71653 -13.51109 -13.08556 -12.97818 -12.92201 -12.68278 -12.51736 -12.25308 -12.08929 -11.75792 -11.68856 -11.40758 -11.23251 -11.09393 -10.77129 -10.67613 -10.43027 -10.37707 -10.04951 -9.99759 -9.77062 -9.73819 -9.56484 -9.51247 -9.12218 -8.63949 -8.52484 -6.83276 -5.61790 -3.05848 0.10816 0.94085 1.50133 2.38161 3.33990 3.38419 3.42772 3.46328 3.48412 3.50771 3.76116 4.35378 4.50690 4.65820 4.74631 4.87502 4.91637 4.98098 5.05599 5.15776 5.23736 5.28844 5.31947 5.36247 5.42086 5.54293 5.73275 5.77026 5.86232 5.93992 6.01570 6.13550 6.21479 6.36100 6.45508 6.65398 6.68476 6.72748 6.91910 7.42644 7.48423 7.61965 7.74741 7.91507 8.37444 8.44050 9.22587 9.84001 10.46841 11.40959 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.002544 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.193271 B =11001.540811 C =12049.257035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.168 3.832 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.023 3.977 7 N -0.450 5.450 8 C 0.083 3.917 9 C -0.275 4.275 10 C 0.589 3.411 11 O -0.525 6.525 12 N -0.699 5.699 13 C 0.121 3.879 14 H 0.093 0.907 15 C 0.149 3.851 16 N -0.603 5.603 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.916 3.084 22 H -0.290 1.290 23 H -0.284 1.284 24 H -0.286 1.286 25 C 0.141 3.859 26 C -0.111 4.111 27 H 0.074 0.926 28 C -0.138 4.138 29 S 0.240 5.760 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.182 0.818 37 H 0.395 0.605 38 H 0.114 0.886 39 H 0.014 0.986 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.028 0.972 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.132 -10.483 -5.052 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.106 3.894 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.252 4.252 7 N -0.164 5.164 8 C -0.075 4.075 9 C -0.400 4.400 10 C 0.373 3.627 11 O -0.402 6.402 12 N -0.349 5.349 13 C 0.016 3.984 14 H 0.111 0.889 15 C 0.023 3.977 16 N -0.329 5.329 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.566 5.566 21 Si 0.746 3.254 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.212 1.212 25 C 0.015 3.985 26 C -0.131 4.131 27 H 0.093 0.907 28 C -0.196 4.196 29 S 0.498 5.502 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.199 0.801 37 H 0.229 0.771 38 H 0.131 0.869 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.618 -9.182 -4.533 23.021 hybrid contribution 1.394 -0.298 -0.458 1.497 sum -19.224 -9.480 -4.991 22.008 Atomic orbital electron populations 1.22888 0.80686 1.03281 1.00142 1.88089 1.19568 1.25708 1.94933 1.20455 0.87381 0.86237 0.95315 0.90014 1.22270 1.03289 1.02388 0.94792 1.27275 1.00432 0.96446 1.01087 1.66015 1.00716 1.25556 1.24098 1.22213 0.96085 0.96690 0.92519 1.26008 1.02128 1.03072 1.08802 1.16625 0.81071 0.83422 0.81607 1.90889 1.80712 1.25505 1.43066 1.45633 1.16413 1.28483 1.44377 1.22772 0.85466 0.96337 0.93785 0.88934 1.22240 0.83245 0.99696 0.92558 1.44384 1.15640 1.09699 1.63191 1.19011 0.94694 0.92340 1.29511 0.90359 1.24828 0.97771 0.97875 1.00087 1.69790 1.24717 1.21951 1.40094 0.86142 0.80849 0.80847 0.77569 1.21579 1.21090 1.21225 1.21340 0.93228 0.87192 0.96726 1.22431 0.96445 0.95766 0.98409 0.90739 1.21749 1.00251 0.99518 0.98038 1.84027 1.07490 1.25414 1.33241 0.93782 0.93703 0.89159 0.91226 0.90991 0.90551 0.80104 0.77121 0.86880 0.96839 0.93593 0.95781 0.95394 0.93056 0.92758 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.36 -3.67 10.32 -35.23 -0.36 -4.04 16 3 C 0.17 1.51 3.23 -27.89 -0.09 1.42 16 4 H 0.08 0.53 7.78 -51.93 -0.40 0.13 16 5 C -0.17 -1.29 9.51 37.16 0.35 -0.94 16 6 C 0.02 0.26 6.28 -13.29 -0.08 0.18 16 7 N -0.45 -5.94 10.49 -11.50 -0.12 -6.06 16 8 C 0.08 1.05 10.93 -18.85 -0.21 0.84 16 9 C -0.28 -3.96 6.48 -37.10 -0.24 -4.20 16 10 C 0.59 10.34 7.78 -12.85 -0.10 10.24 16 11 O -0.52 -11.40 16.71 5.20 0.09 -11.31 16 12 N -0.70 -11.24 5.21 -53.04 -0.28 -11.52 16 13 C 0.12 2.34 2.76 -65.79 -0.18 2.16 16 14 H 0.09 1.96 7.64 -51.93 -0.40 1.57 16 15 C 0.15 3.69 5.58 -2.53 -0.01 3.68 16 16 N -0.60 -15.59 3.39 -170.07 -0.58 -16.16 16 17 C -0.23 -6.41 10.27 -15.06 -0.15 -6.57 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.59 10.09 55.49 0.56 -27.04 16 21 Si 0.92 22.46 29.55 -169.99 -5.02 17.44 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.14 2.90 6.85 -3.06 -0.02 2.88 16 26 C -0.11 -1.83 3.15 -88.78 -0.28 -2.11 16 27 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 28 C -0.14 -1.85 9.17 37.16 0.34 -1.51 16 29 S 0.24 2.93 23.01 -107.50 -2.47 0.46 16 30 H 0.04 0.22 8.08 -51.93 -0.42 -0.20 16 31 H 0.04 0.20 7.87 -51.93 -0.41 -0.21 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.18 1.77 7.15 -52.49 -0.38 1.40 16 37 H 0.39 4.97 7.22 -40.82 -0.29 4.68 16 38 H 0.11 3.32 5.87 -51.93 -0.30 3.01 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.03 0.57 7.78 -51.93 -0.40 0.16 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -35.13 384.89 -8.82 -43.95 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.76 Total: 1.52 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 0.32 Total: 6.95 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.41 Total: -60.78 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.28 Total: -15.35 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.47 Total: 0.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.13 -8.82 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079701201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.136 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds