Wall clock time and date at job start Sat Apr 11 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00059 * 2 1 4 4 H 1.08997 * 109.47271 * 330.00271 * 3 2 1 5 5 C 1.53001 * 109.46716 * 90.00648 * 3 2 1 6 6 C 1.50693 * 109.46912 * 210.00249 * 3 2 1 7 7 N 1.28650 * 124.71949 * 135.00726 * 6 3 2 8 8 C 1.33559 * 115.76896 * 179.97438 * 7 6 3 9 9 C 1.47267 * 123.14319 * 180.02562 * 8 7 6 10 10 O 1.21635 * 120.00047 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99741 * 359.97438 * 9 8 7 12 12 C 1.47290 * 125.79121 * 180.02562 * 11 9 8 13 13 C 1.54325 * 107.30599 * 178.92556 * 12 11 9 14 14 H 1.08997 * 110.72163 * 96.18354 * 13 12 11 15 15 C 1.53003 * 110.72022 * 219.45263 * 13 12 11 16 16 C 1.55154 * 102.94303 * 337.81911 * 13 12 11 17 17 H 1.09008 * 111.00345 * 277.42446 * 16 13 12 18 18 N 1.46496 * 111.00463 * 153.57766 * 16 13 12 19 19 C 1.36940 * 120.00174 * 161.35219 * 18 16 13 20 20 H 1.08003 * 119.99978 * 359.97438 * 19 18 16 21 21 C 1.38805 * 120.00135 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00230 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47214 * 59.99630 * 23 21 19 25 25 H 1.48507 * 109.46824 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46956 * 299.99168 * 23 21 19 27 27 C 1.47425 * 125.65138 * 0.02847 * 11 9 8 28 28 C 1.35214 * 113.71541 * 0.26153 * 8 7 6 29 29 S 1.70774 * 124.72336 * 314.96186 * 6 3 2 30 30 H 1.09001 * 109.47557 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46601 * 299.99381 * 1 2 3 32 32 H 1.08997 * 109.47128 * 59.99256 * 1 2 3 33 33 H 1.09006 * 109.47145 * 299.99513 * 5 3 2 34 34 H 1.08997 * 109.47559 * 59.99799 * 5 3 2 35 35 H 1.08997 * 109.47093 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.85762 * 59.50172 * 12 11 9 37 37 H 1.08995 * 110.00297 * 298.43119 * 12 11 9 38 38 H 1.08995 * 109.46983 * 173.52221 * 15 13 12 39 39 H 1.09001 * 109.47276 * 293.52685 * 15 13 12 40 40 H 1.09004 * 109.46998 * 53.52573 * 15 13 12 41 41 H 0.97000 * 120.00071 * 341.34892 * 18 16 13 42 42 H 0.96995 * 120.00143 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.36696 * 85.25946 * 27 11 9 44 44 H 1.08995 * 110.36608 * 323.04783 * 27 11 9 45 45 H 1.07996 * 125.58057 * 179.73646 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7712 1.4425 6 6 3.3386 1.2638 -0.7104 7 7 3.7325 2.1275 -1.5787 8 6 4.9452 1.9177 -2.0976 9 6 5.5553 2.8043 -3.1028 10 8 6.6648 2.5589 -3.5368 11 7 4.8843 3.8875 -3.5418 12 6 5.3701 4.8557 -4.5398 13 6 4.2557 5.9038 -4.7430 14 1 4.4365 6.7836 -4.1254 15 6 4.1393 6.2911 -6.2186 16 6 2.9826 5.1536 -4.2702 17 1 2.5862 4.5187 -5.0627 18 7 1.9647 6.0941 -3.7954 19 6 0.6579 5.6967 -3.6969 20 1 0.3776 4.6900 -3.9698 21 6 -0.3066 6.5880 -3.2475 22 7 0.0348 7.8150 -2.9155 23 14 -2.0893 6.0460 -3.1140 24 1 -2.1899 4.9031 -2.1714 25 1 -2.9136 7.1749 -2.6124 26 1 -2.5815 5.6294 -4.4517 27 6 3.5393 4.3015 -3.1024 28 6 5.5583 0.8123 -1.6174 29 16 4.5309 0.0642 -0.4743 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.2570 1.8013 1.9565 34 1 2.8831 1.0773 1.9563 35 1 2.6608 2.7671 1.4426 36 1 5.5754 4.3458 -5.4811 37 1 6.2752 5.3426 -4.1771 38 1 3.2757 6.9416 -6.3564 39 1 5.0428 6.8160 -6.5289 40 1 4.0164 5.3915 -6.8217 41 1 2.2163 6.9983 -3.5506 42 1 -0.6392 8.4379 -2.6018 43 1 3.6046 4.9000 -2.1937 44 1 2.9090 3.4281 -2.9359 45 1 6.5377 0.4612 -1.9069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082513173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:03 Heat of formation + Delta-G solvation = -13.842558 kcal Electronic energy + Delta-G solvation = -27858.829527 eV Core-core repulsion = 24004.072354 eV Total energy + Delta-G solvation = -3854.757173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58238 -39.12829 -38.21507 -37.34610 -34.04381 -32.71826 -32.36584 -30.67817 -29.74826 -27.45652 -27.15101 -26.96084 -25.16388 -24.04331 -23.22785 -21.57294 -20.56634 -19.83625 -19.45019 -18.22319 -17.14872 -16.54993 -16.44321 -16.20113 -15.78264 -15.48489 -15.31410 -14.85757 -14.27890 -14.07930 -13.72454 -13.53539 -13.18365 -13.09979 -12.96573 -12.89928 -12.73175 -12.65958 -12.38571 -12.09376 -11.87155 -11.68191 -11.59052 -11.24172 -11.09886 -10.98935 -10.72469 -10.60477 -10.27844 -10.10470 -9.98061 -9.95894 -9.72051 -9.69376 -9.55706 -9.00942 -8.94283 -8.25225 -7.04526 -5.83125 -3.12818 0.44419 1.15908 1.58235 1.96590 3.12218 3.33194 3.37878 3.43408 3.44213 3.49164 4.18243 4.51303 4.61436 4.85137 4.93196 5.00016 5.11463 5.16649 5.20740 5.23946 5.26293 5.26950 5.46668 5.54182 5.56540 5.57373 5.65861 5.75190 5.83938 5.92490 5.93384 5.98125 6.08347 6.28179 6.33152 6.50945 6.58049 6.63482 6.78152 6.83264 6.96145 7.40077 7.64672 7.80285 8.31701 8.35520 9.46339 10.01083 10.36681 11.39074 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007938 B = 0.004940 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.300824 B = 5667.132010 C = 8722.447431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.160 3.840 4 H 0.101 0.899 5 C -0.168 4.168 6 C 0.023 3.977 7 N -0.420 5.420 8 C 0.020 3.980 9 C 0.602 3.398 10 O -0.552 6.552 11 N -0.594 5.594 12 C 0.117 3.883 13 C -0.114 4.114 14 H 0.084 0.916 15 C -0.134 4.134 16 C 0.174 3.826 17 H 0.062 0.938 18 N -0.710 5.710 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.078 3.922 28 C -0.235 4.235 29 S 0.236 5.764 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -14.269 6.026 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.099 3.901 4 H 0.119 0.881 5 C -0.226 4.226 6 C -0.256 4.256 7 N -0.136 5.136 8 C -0.116 4.116 9 C 0.388 3.612 10 O -0.431 6.431 11 N -0.325 5.325 12 C -0.006 4.006 13 C -0.134 4.134 14 H 0.103 0.897 15 C -0.191 4.191 16 C 0.062 3.938 17 H 0.080 0.920 18 N -0.350 5.350 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.047 4.047 28 C -0.378 4.378 29 S 0.493 5.507 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.110 -15.094 6.300 17.834 hybrid contribution -0.733 0.906 -0.413 1.236 sum 6.377 -14.188 5.887 16.632 Atomic orbital electron populations 1.22866 0.79674 1.03069 1.00912 1.87851 1.20765 1.26491 1.95177 1.20350 0.88469 0.86179 0.95118 0.88150 1.22280 1.03338 1.02497 0.94503 1.26892 1.01923 0.96477 1.00330 1.67164 1.12409 1.26241 1.07799 1.20333 0.91424 0.97475 1.02322 1.16699 0.84139 0.79771 0.80626 1.90774 1.19406 1.73564 1.59380 1.48378 1.19478 1.23765 1.40915 1.22075 0.97190 0.89655 0.91685 1.22494 0.95311 0.97659 0.97922 0.89722 1.21666 1.01788 1.01433 0.94248 1.21434 0.87950 0.91190 0.93249 0.91973 1.42253 1.03356 1.11408 1.77942 1.19174 0.84039 0.96819 1.37199 0.91177 1.24721 0.97992 0.95881 1.01905 1.69644 1.33087 1.04626 1.50505 0.86301 0.85052 0.77224 0.77779 1.21306 1.21683 1.21222 1.23716 0.80636 1.00688 0.99652 1.26682 1.07143 1.00214 1.03724 1.82796 1.06055 1.26961 1.34851 0.89234 0.93483 0.93159 0.90918 0.91558 0.90483 0.91462 0.91800 0.91317 0.93210 0.92909 0.77901 0.93379 0.91514 0.88809 0.79431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.38 -4.35 10.17 -35.23 -0.36 -4.71 16 3 C 0.16 1.92 3.23 -27.89 -0.09 1.83 16 4 H 0.10 1.32 7.79 -51.93 -0.40 0.92 16 5 C -0.17 -1.66 9.51 37.16 0.35 -1.31 16 6 C 0.02 0.31 6.30 -13.61 -0.09 0.23 16 7 N -0.42 -6.75 7.33 -8.51 -0.06 -6.82 16 8 C 0.02 0.32 6.61 -84.52 -0.56 -0.23 16 9 C 0.60 10.92 7.83 -12.59 -0.10 10.82 16 10 O -0.55 -10.86 17.05 5.25 0.09 -10.77 16 11 N -0.59 -10.56 3.34 -171.63 -0.57 -11.13 16 12 C 0.12 1.86 6.49 -2.92 -0.02 1.84 16 13 C -0.11 -1.87 3.17 -88.78 -0.28 -2.15 16 14 H 0.08 1.41 8.00 -51.93 -0.42 1.00 16 15 C -0.13 -1.95 9.16 37.16 0.34 -1.61 16 16 C 0.17 3.40 3.13 -65.79 -0.21 3.19 16 17 H 0.06 1.26 8.04 -51.92 -0.42 0.84 16 18 N -0.71 -16.87 5.28 -51.35 -0.27 -17.14 16 19 C -0.24 -6.36 9.98 -15.06 -0.15 -6.51 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 23 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.08 1.48 5.73 -2.53 -0.01 1.47 16 28 C -0.24 -3.08 10.62 29.66 0.31 -2.76 16 29 S 0.24 2.57 22.74 -107.50 -2.44 0.12 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 32 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.03 7.77 -51.93 -0.40 0.63 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.73 8.06 -51.93 -0.42 0.32 16 41 H 0.39 9.78 7.71 -40.82 -0.31 9.46 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 45 H 0.19 2.15 8.03 -52.49 -0.42 1.73 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -31.13 386.27 -8.45 -39.57 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.85 Total: 8.99 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 0.50 Total: 5.85 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.18 Total: -61.33 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.27 Total: -15.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.44 Total: 0.12 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.13 -8.45 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082513173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.730 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds