Wall clock time and date at job start Sat Apr 11 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00059 * 2 1 4 4 H 1.08997 * 109.47271 * 330.00271 * 3 2 1 5 5 C 1.53001 * 109.46716 * 90.00648 * 3 2 1 6 6 C 1.50693 * 109.46912 * 210.00249 * 3 2 1 7 7 N 1.28650 * 124.71949 * 135.00726 * 6 3 2 8 8 C 1.33559 * 115.76896 * 179.97438 * 7 6 3 9 9 C 1.47267 * 123.14319 * 180.02562 * 8 7 6 10 10 O 1.21635 * 120.00047 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99741 * 359.97438 * 9 8 7 12 12 C 1.47290 * 125.79121 * 180.02562 * 11 9 8 13 13 C 1.54325 * 107.30599 * 178.92556 * 12 11 9 14 14 H 1.08997 * 110.72163 * 96.18354 * 13 12 11 15 15 C 1.53003 * 110.72022 * 219.45263 * 13 12 11 16 16 C 1.55154 * 102.94303 * 337.81911 * 13 12 11 17 17 H 1.09008 * 111.00345 * 277.42446 * 16 13 12 18 18 N 1.46496 * 111.00463 * 153.57766 * 16 13 12 19 19 C 1.36940 * 120.00174 * 161.35219 * 18 16 13 20 20 H 1.08003 * 119.99978 * 359.97438 * 19 18 16 21 21 C 1.38805 * 120.00135 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00230 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47214 * 59.99630 * 23 21 19 25 25 H 1.48507 * 109.46824 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46956 * 299.99168 * 23 21 19 27 27 C 1.47425 * 125.65138 * 0.02847 * 11 9 8 28 28 C 1.35214 * 113.71541 * 0.26153 * 8 7 6 29 29 S 1.70774 * 124.72336 * 314.96186 * 6 3 2 30 30 H 1.09001 * 109.47557 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46601 * 299.99381 * 1 2 3 32 32 H 1.08997 * 109.47128 * 59.99256 * 1 2 3 33 33 H 1.09006 * 109.47145 * 299.99513 * 5 3 2 34 34 H 1.08997 * 109.47559 * 59.99799 * 5 3 2 35 35 H 1.08997 * 109.47093 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.85762 * 59.50172 * 12 11 9 37 37 H 1.08995 * 110.00297 * 298.43119 * 12 11 9 38 38 H 1.08995 * 109.46983 * 173.52221 * 15 13 12 39 39 H 1.09001 * 109.47276 * 293.52685 * 15 13 12 40 40 H 1.09004 * 109.46998 * 53.52573 * 15 13 12 41 41 H 0.97000 * 120.00071 * 341.34892 * 18 16 13 42 42 H 0.96995 * 120.00143 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.36696 * 85.25946 * 27 11 9 44 44 H 1.08995 * 110.36608 * 323.04783 * 27 11 9 45 45 H 1.07996 * 125.58057 * 179.73646 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7712 1.4425 6 6 3.3386 1.2638 -0.7104 7 7 3.7325 2.1275 -1.5787 8 6 4.9452 1.9177 -2.0976 9 6 5.5553 2.8043 -3.1028 10 8 6.6648 2.5589 -3.5368 11 7 4.8843 3.8875 -3.5418 12 6 5.3701 4.8557 -4.5398 13 6 4.2557 5.9038 -4.7430 14 1 4.4365 6.7836 -4.1254 15 6 4.1393 6.2911 -6.2186 16 6 2.9826 5.1536 -4.2702 17 1 2.5862 4.5187 -5.0627 18 7 1.9647 6.0941 -3.7954 19 6 0.6579 5.6967 -3.6969 20 1 0.3776 4.6900 -3.9698 21 6 -0.3066 6.5880 -3.2475 22 7 0.0348 7.8150 -2.9155 23 14 -2.0893 6.0460 -3.1140 24 1 -2.1899 4.9031 -2.1714 25 1 -2.9136 7.1749 -2.6124 26 1 -2.5815 5.6294 -4.4517 27 6 3.5393 4.3015 -3.1024 28 6 5.5583 0.8123 -1.6174 29 16 4.5309 0.0642 -0.4743 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.2570 1.8013 1.9565 34 1 2.8831 1.0773 1.9563 35 1 2.6608 2.7671 1.4426 36 1 5.5754 4.3458 -5.4811 37 1 6.2752 5.3426 -4.1771 38 1 3.2757 6.9416 -6.3564 39 1 5.0428 6.8160 -6.5289 40 1 4.0164 5.3915 -6.8217 41 1 2.2163 6.9983 -3.5506 42 1 -0.6392 8.4379 -2.6018 43 1 3.6046 4.9000 -2.1937 44 1 2.9090 3.4281 -2.9359 45 1 6.5377 0.4612 -1.9069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082513173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:02 Heat of formation + Delta-G solvation = -34.301056 kcal Electronic energy + Delta-G solvation = -27859.716674 eV Core-core repulsion = 24004.072354 eV Total energy + Delta-G solvation = -3855.644320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.80828 -40.35981 -39.23232 -38.71904 -35.87709 -34.00377 -33.51622 -32.49635 -30.75878 -29.13286 -28.32435 -27.78003 -26.22902 -25.88511 -24.42674 -22.95658 -21.75626 -21.31204 -20.60483 -19.45970 -19.09030 -17.67164 -17.59405 -17.33588 -16.99193 -16.68101 -16.49982 -16.24856 -15.81267 -15.35753 -15.07532 -14.93080 -14.55490 -14.51460 -14.29819 -14.07736 -14.00651 -13.65508 -13.36664 -13.27431 -13.08161 -12.92624 -12.83892 -12.80670 -12.65226 -12.25839 -12.18850 -12.06599 -12.01781 -11.72073 -11.45038 -11.33245 -11.02840 -10.90665 -10.69342 -10.58805 -10.06756 -9.66742 -9.02256 -7.92586 -5.22165 -0.59992 0.19208 0.55309 0.76967 1.48609 1.50869 1.57080 1.91757 2.15051 2.33109 2.57570 3.16143 3.38188 3.44862 3.66687 3.79536 3.94084 3.98227 4.04081 4.06258 4.17123 4.22106 4.38560 4.45435 4.49464 4.54207 4.55952 4.60618 4.67532 4.70019 4.81546 4.87072 4.90381 4.98246 5.12358 5.15196 5.15865 5.26313 5.34077 5.44759 5.54793 5.98054 6.27441 6.30700 6.40223 6.95871 7.35485 8.05822 8.32243 9.30115 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007938 B = 0.004940 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.300824 B = 5667.132010 C = 8722.447431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.391 6.391 3 C 0.160 3.840 4 H 0.079 0.921 5 C -0.163 4.163 6 C -0.002 4.002 7 N -0.452 5.452 8 C -0.015 4.015 9 C 0.599 3.401 10 O -0.572 6.572 11 N -0.599 5.599 12 C 0.118 3.882 13 C -0.103 4.103 14 H 0.080 0.920 15 C -0.127 4.127 16 C 0.169 3.831 17 H 0.057 0.943 18 N -0.717 5.717 19 C -0.239 4.239 20 H 0.073 0.927 21 C -0.066 4.066 22 N -0.966 5.966 23 Si 0.966 3.034 24 H -0.276 1.276 25 H -0.296 1.296 26 H -0.280 1.280 27 C 0.100 3.900 28 C -0.232 4.232 29 S 0.331 5.669 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -16.430 6.599 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C 0.099 3.901 4 H 0.097 0.903 5 C -0.221 4.221 6 C -0.280 4.280 7 N -0.169 5.169 8 C -0.151 4.151 9 C 0.386 3.614 10 O -0.453 6.453 11 N -0.329 5.329 12 C -0.004 4.004 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.185 4.185 16 C 0.059 3.941 17 H 0.075 0.925 18 N -0.357 5.357 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.258 4.258 22 N -0.616 5.616 23 Si 0.795 3.205 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.206 1.206 27 C -0.026 4.026 28 C -0.375 4.375 29 S 0.589 5.411 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 7.490 -17.300 6.865 20.063 hybrid contribution -0.784 1.431 -0.551 1.722 sum 6.706 -15.869 6.314 18.348 Atomic orbital electron populations 1.23052 0.78477 1.04524 1.01007 1.87817 1.22044 1.25882 1.95263 1.20338 0.87673 0.86225 0.95861 0.90260 1.22255 1.04431 1.02119 0.93342 1.27193 1.03344 0.97325 1.00183 1.67088 1.12852 1.27913 1.09074 1.20173 0.92425 0.98796 1.03681 1.17032 0.83915 0.79737 0.80708 1.90744 1.20129 1.74098 1.60346 1.48402 1.18941 1.24265 1.41312 1.22155 0.97135 0.89274 0.91885 1.22406 0.93469 0.97272 0.99102 0.90142 1.21619 1.02312 1.01690 0.92869 1.21540 0.88412 0.91026 0.93166 0.92529 1.42323 1.03521 1.11613 1.78199 1.19485 0.85209 0.96720 1.35693 0.90955 1.25450 1.01775 0.96047 1.02562 1.69796 1.33916 1.05673 1.52209 0.85331 0.80428 0.76784 0.77957 1.20183 1.22274 1.20623 1.23251 0.81343 0.99702 0.98285 1.27030 1.07935 0.99218 1.03348 1.82430 1.02905 1.23729 1.32034 0.87098 0.92212 0.94300 0.89512 0.90132 0.91550 0.90350 0.90746 0.93166 0.90492 0.92126 0.79028 0.94000 0.93471 0.89727 0.77902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 113.37 1.23 1.64 16 2 O -0.39 -8.24 10.17 -148.98 -1.52 -9.76 16 3 C 0.16 3.75 3.23 29.85 0.10 3.84 16 4 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 5 C -0.16 -3.03 9.51 71.98 0.68 -2.34 16 6 C 0.00 -0.05 6.30 88.57 0.56 0.51 16 7 N -0.45 -14.65 7.33 -180.83 -1.33 -15.98 16 8 C -0.02 -0.49 6.61 40.56 0.27 -0.22 16 9 C 0.60 21.70 7.83 86.62 0.68 22.37 16 10 O -0.57 -22.22 17.05 -4.14 -0.07 -22.29 16 11 N -0.60 -21.35 3.34 -815.14 -2.72 -24.07 16 12 C 0.12 3.66 6.49 86.68 0.56 4.22 16 13 C -0.10 -3.33 3.17 -9.60 -0.03 -3.37 16 14 H 0.08 2.69 8.00 -2.39 -0.02 2.68 16 15 C -0.13 -3.58 9.16 71.98 0.66 -2.92 16 16 C 0.17 6.73 3.13 46.38 0.15 6.88 16 17 H 0.06 2.32 8.04 -2.38 -0.02 2.30 16 18 N -0.72 -34.96 5.28 -316.38 -1.67 -36.63 16 19 C -0.24 -12.83 9.98 84.03 0.84 -11.99 16 20 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 22 N -0.97 -57.20 13.06 21.65 0.28 -56.92 16 23 Si 0.97 44.52 29.55 68.60 2.03 46.54 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 C 0.10 3.88 5.73 86.86 0.50 4.38 16 28 C -0.23 -5.69 10.62 67.12 0.71 -4.98 16 29 S 0.33 6.38 22.74 -56.49 -1.28 5.10 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 0.82 7.87 -2.39 -0.02 0.80 16 32 H 0.04 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.09 1.34 7.87 -2.38 -0.02 1.33 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 2.28 7.77 -2.38 -0.02 2.26 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.60 8.06 -2.39 -0.02 1.58 16 41 H 0.38 19.68 7.71 -92.71 -0.71 18.97 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.08 3.47 6.01 -2.39 -0.01 3.45 16 45 H 0.20 4.21 8.03 -2.91 -0.02 4.19 16 Total: -1.00 -67.65 386.27 1.38 -66.27 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.29 Total: 32.88 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 7.36 Total: 14.86 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -5.43 Total: -133.60 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.59 Total: -32.05 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -1.28 Total: 5.10 kcal Total: -67.65 1.38 -66.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082513173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.972 kcal (2) G-P(sol) polarization free energy of solvation -67.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds