Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99786 * 2 1 4 4 H 1.09001 * 109.47400 * 30.00410 * 3 2 1 5 5 C 1.53000 * 109.47160 * 269.99624 * 3 2 1 6 6 C 1.50707 * 109.46918 * 150.00144 * 3 2 1 7 7 N 1.29423 * 124.80584 * 44.96901 * 6 3 2 8 8 C 1.30946 * 117.36579 * 179.72602 * 7 6 3 9 9 C 1.35664 * 114.18597 * 0.53435 * 8 7 6 10 10 C 1.46688 * 126.12839 * 179.78136 * 9 8 7 11 11 O 1.21682 * 120.00336 * 179.69143 * 10 9 8 12 12 N 1.34779 * 119.99825 * 359.68919 * 10 9 8 13 13 C 1.46503 * 119.99908 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.64172 * 323.31149 * 13 12 10 15 15 C 1.55155 * 110.71980 * 86.45622 * 13 12 10 16 16 C 1.54906 * 101.58202 * 153.86751 * 15 13 12 17 17 N 1.47426 * 104.82959 * 322.98796 * 16 15 13 18 18 C 1.36935 * 125.64598 * 204.09185 * 17 16 15 19 19 H 1.08005 * 119.99877 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00369 * 359.75480 * 18 17 16 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47154 * 89.99247 * 22 20 18 24 24 H 1.48496 * 109.47375 * 209.99772 * 22 20 18 25 25 H 1.48502 * 109.46736 * 329.99467 * 22 20 18 26 26 C 1.47018 * 108.70612 * 24.35650 * 17 16 15 27 27 H 1.08996 * 109.88548 * 239.29371 * 26 17 16 28 28 C 1.52995 * 109.88134 * 118.12761 * 26 17 16 29 29 S 1.70956 * 124.80142 * 225.00179 * 6 3 2 30 30 H 1.09000 * 109.47254 * 59.99700 * 1 2 3 31 31 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47249 * 300.00035 * 1 2 3 33 33 H 1.09003 * 109.46504 * 60.00498 * 5 3 2 34 34 H 1.08997 * 109.46843 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.47166 * 300.00509 * 5 3 2 36 36 H 1.07999 * 122.90781 * 180.34635 * 8 7 6 37 37 H 0.97000 * 120.00359 * 359.97438 * 12 10 9 38 38 H 1.08996 * 111.00485 * 35.78980 * 15 13 12 39 39 H 1.09005 * 110.99829 * 271.93968 * 15 13 12 40 40 H 1.09004 * 110.36614 * 204.15475 * 16 15 13 41 41 H 1.08999 * 110.37158 * 81.82525 * 16 15 13 42 42 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.47492 * 61.45947 * 28 26 17 44 44 H 1.09006 * 109.47327 * 181.45442 * 28 26 17 45 45 H 1.09002 * 109.47636 * 301.45534 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 4.2429 0.3550 0.5335 8 6 5.3493 0.4639 1.2253 9 6 5.3820 1.5358 2.0563 10 6 6.4856 1.9043 2.9495 11 8 6.3984 2.8979 3.6466 12 7 7.5963 1.1424 2.9982 13 6 8.6983 1.5101 3.8907 14 1 8.8130 2.5932 3.9336 15 6 8.4736 0.9252 5.3101 16 6 9.9271 0.8130 5.8340 17 7 10.7218 0.4121 4.6587 18 6 11.9227 -0.2450 4.6939 19 1 12.4287 -0.4949 3.7730 20 6 12.4925 -0.5849 5.9132 21 7 11.8788 -0.2752 7.0355 22 14 14.1311 -1.4807 5.9612 23 1 15.2360 -0.4895 6.0028 24 1 14.1905 -2.3394 7.1711 25 1 14.2691 -2.3252 4.7475 26 6 10.0147 0.8402 3.4430 27 1 9.7942 -0.0252 2.8181 28 6 10.8731 1.8409 2.6669 29 16 3.8642 2.4103 1.8646 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.2568 1.8014 -1.9563 34 1 2.6614 2.7669 -1.4424 35 1 2.8829 1.0774 -1.9563 36 1 6.1640 -0.2403 1.1438 37 1 7.6657 0.3501 2.4428 38 1 8.0002 -0.0552 5.2583 39 1 7.8881 1.6080 5.9258 40 1 9.9921 0.0533 6.6129 41 1 10.2694 1.7761 6.2127 42 1 12.2770 -0.5124 7.8876 43 1 11.8052 1.3630 2.3653 44 1 10.3322 2.1734 1.7808 45 1 11.0937 2.6994 3.3013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088569577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -4.358345 kcal Electronic energy + Delta-G solvation = -26710.984713 eV Core-core repulsion = 22856.638806 eV Total energy + Delta-G solvation = -3854.345907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.43549 -39.50080 -38.36051 -37.51577 -34.15624 -32.95566 -32.06816 -30.48678 -30.07293 -28.44806 -27.27732 -26.31152 -24.71339 -24.02378 -23.28769 -21.78980 -20.33414 -20.10969 -19.43759 -18.49540 -17.54688 -16.80691 -16.56214 -15.97980 -15.84147 -15.68842 -15.12245 -14.76603 -14.56250 -14.19872 -14.09676 -13.84047 -13.58852 -13.44741 -13.10460 -12.81981 -12.75781 -12.18564 -12.15430 -12.04292 -11.82900 -11.60225 -11.48695 -11.16750 -10.88990 -10.87588 -10.62615 -10.56933 -10.38679 -10.13313 -10.09228 -9.80065 -9.72167 -9.67065 -9.58226 -9.26016 -8.74572 -8.65553 -6.90226 -5.67709 -3.10588 -0.03656 0.80610 1.35917 2.24649 3.13942 3.25406 3.37014 3.38797 3.44036 3.45702 3.65205 4.26341 4.46109 4.56348 4.62467 4.75096 4.85250 4.92537 4.97446 5.14511 5.23569 5.26214 5.27759 5.39374 5.49749 5.59231 5.66521 5.75368 5.78259 6.08434 6.19711 6.26181 6.30276 6.48526 6.55691 6.61404 6.68540 6.82353 7.04768 7.36743 7.47963 7.56459 7.60165 7.82907 8.19476 8.32733 9.18206 9.79081 10.42554 11.35856 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.002135 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.513225 B =13111.085199 C =13299.641499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.028 3.972 7 N -0.449 5.449 8 C 0.088 3.912 9 C -0.282 4.282 10 C 0.592 3.408 11 O -0.536 6.536 12 N -0.700 5.700 13 C 0.136 3.864 14 H 0.094 0.906 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.156 3.844 27 H 0.037 0.963 28 C -0.156 4.156 29 S 0.236 5.764 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.184 0.816 37 H 0.399 0.601 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.015 0.985 42 H 0.253 0.747 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.441 4.378 -15.132 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.248 4.248 7 N -0.163 5.163 8 C -0.070 4.070 9 C -0.406 4.406 10 C 0.376 3.624 11 O -0.414 6.414 12 N -0.350 5.350 13 C 0.032 3.968 14 H 0.112 0.888 15 C -0.193 4.193 16 C 0.028 3.972 17 N -0.320 5.320 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.048 3.952 27 H 0.055 0.945 28 C -0.216 4.216 29 S 0.495 5.505 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.201 0.799 37 H 0.234 0.766 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.815 5.336 -14.385 27.494 hybrid contribution 1.516 -1.265 -0.300 1.997 sum -21.299 4.071 -14.685 26.189 Atomic orbital electron populations 1.22899 0.80565 1.03399 1.00142 1.88102 1.19668 1.25539 1.94919 1.20471 0.87339 0.86397 0.95299 0.89975 1.22267 1.03371 1.02266 0.94800 1.27323 1.00435 0.96293 1.00707 1.66027 1.00702 1.25335 1.24248 1.22282 0.96110 0.96404 0.92222 1.25955 1.02168 1.03535 1.08982 1.16644 0.81180 0.83319 0.81288 1.90846 1.80517 1.26509 1.43509 1.45848 1.16505 1.28534 1.44134 1.22241 0.84866 1.00136 0.89545 0.88767 1.23414 1.01018 0.99878 0.94958 1.21953 0.83800 0.99964 0.91467 1.44492 1.21764 1.66341 0.99387 1.19015 0.94685 1.28405 0.92788 0.90420 1.24797 0.99113 1.01421 0.95279 1.69797 1.38483 1.51854 0.96736 0.86074 0.83275 0.79115 0.77017 1.21648 1.21666 1.20699 1.20980 0.89754 0.94246 0.90264 0.94549 1.22251 1.00468 1.00057 0.98776 1.83989 1.07603 1.25571 1.33374 0.93674 0.89067 0.93749 0.91147 0.91082 0.90532 0.79917 0.76627 0.91881 0.91825 0.87287 0.96668 0.93664 0.92566 0.94303 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.44 10.32 -35.23 -0.36 -3.80 16 3 C 0.17 1.33 3.23 -27.88 -0.09 1.24 16 4 H 0.08 0.45 7.78 -51.93 -0.40 0.04 16 5 C -0.17 -1.08 9.51 37.16 0.35 -0.73 16 6 C 0.03 0.29 6.28 -13.29 -0.08 0.20 16 7 N -0.45 -5.47 10.49 -11.50 -0.12 -5.60 16 8 C 0.09 1.01 10.93 -18.85 -0.21 0.81 16 9 C -0.28 -3.58 6.48 -37.09 -0.24 -3.82 16 10 C 0.59 9.09 7.78 -12.85 -0.10 8.99 16 11 O -0.54 -10.01 16.69 5.20 0.09 -9.92 16 12 N -0.70 -10.29 5.19 -53.33 -0.28 -10.56 16 13 C 0.14 2.45 2.76 -66.09 -0.18 2.26 16 14 H 0.09 1.80 7.40 -51.93 -0.38 1.42 16 15 C -0.15 -3.02 6.77 -24.59 -0.17 -3.19 16 16 C 0.15 3.70 5.88 -2.53 -0.01 3.68 16 17 N -0.59 -14.60 3.13 -162.57 -0.51 -15.11 16 18 C -0.22 -5.93 9.87 -15.06 -0.15 -6.08 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 22 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 C 0.16 3.06 3.48 -66.95 -0.23 2.83 16 27 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 28 C -0.16 -2.84 9.14 37.16 0.34 -2.50 16 29 S 0.24 2.49 23.01 -107.50 -2.47 0.02 16 30 H 0.04 0.17 7.87 -51.93 -0.41 -0.23 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.20 8.09 -51.93 -0.42 -0.22 16 33 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.18 1.65 7.15 -52.49 -0.38 1.28 16 37 H 0.40 4.82 7.03 -40.82 -0.29 4.53 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.11 2.95 5.89 -51.93 -0.31 2.64 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 43 H 0.06 1.05 8.02 -51.93 -0.42 0.64 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -33.00 384.28 -8.84 -41.84 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.74 Total: 1.92 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 0.23 Total: 4.56 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.35 Total: -57.16 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.28 Total: -13.72 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.47 Total: 0.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.00 -8.84 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088569577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.483 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds