Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00074 * 2 1 4 4 H 1.08998 * 109.46610 * 329.99409 * 3 2 1 5 5 C 1.52997 * 109.47264 * 89.99687 * 3 2 1 6 6 C 1.50697 * 109.46996 * 210.00118 * 3 2 1 7 7 N 1.29433 * 124.80156 * 314.69732 * 6 3 2 8 8 C 1.30941 * 117.36243 * 179.77276 * 7 6 3 9 9 C 1.35663 * 114.18914 * 0.50917 * 8 7 6 10 10 C 1.46695 * 126.12818 * 179.69708 * 9 8 7 11 11 O 1.21682 * 119.99826 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99654 * 0.04598 * 10 9 8 13 13 C 1.46508 * 119.99350 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.64368 * 323.31382 * 13 12 10 15 15 C 1.55158 * 110.71788 * 86.45244 * 13 12 10 16 16 C 1.54908 * 101.57932 * 153.86366 * 15 13 12 17 17 N 1.47432 * 104.83332 * 322.98914 * 16 15 13 18 18 C 1.36937 * 125.65109 * 204.16030 * 17 16 15 19 19 H 1.07997 * 119.99818 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99798 * 359.97438 * 18 17 16 21 21 N 1.31620 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99795 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47045 * 89.99742 * 22 20 18 24 24 H 1.48506 * 109.46902 * 209.99616 * 22 20 18 25 25 H 1.48501 * 109.46981 * 329.99264 * 22 20 18 26 26 C 1.47026 * 108.69948 * 24.13115 * 17 16 15 27 27 H 1.08998 * 109.88038 * 239.52323 * 26 17 16 28 28 C 1.53000 * 109.88007 * 118.35744 * 26 17 16 29 29 S 1.70949 * 124.80705 * 134.99978 * 6 3 2 30 30 H 1.09003 * 109.46979 * 59.99699 * 1 2 3 31 31 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47253 * 300.00831 * 1 2 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.46832 * 60.00108 * 5 3 2 35 35 H 1.09004 * 109.47261 * 300.00089 * 5 3 2 36 36 H 1.07997 * 122.90763 * 180.24605 * 8 7 6 37 37 H 0.96990 * 120.00641 * 0.02562 * 12 10 9 38 38 H 1.08997 * 111.00834 * 271.93919 * 15 13 12 39 39 H 1.09004 * 111.00402 * 35.79511 * 15 13 12 40 40 H 1.08992 * 110.36834 * 81.82868 * 16 15 13 41 41 H 1.09005 * 110.36740 * 204.15597 * 16 15 13 42 42 H 0.97000 * 120.00132 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.47412 * 302.18727 * 28 26 17 44 44 H 1.08994 * 109.47535 * 62.19043 * 28 26 17 45 45 H 1.09007 * 109.46716 * 182.18842 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7104 7 7 4.2453 0.3582 -0.5290 8 6 5.3472 0.4610 -1.2289 9 6 5.3823 1.5360 -2.0557 10 6 6.4864 1.9050 -2.9482 11 8 6.3993 2.8987 -3.6452 12 7 7.5972 1.1433 -2.9965 13 6 8.6997 1.5116 -3.8883 14 1 8.3174 1.9267 -4.8208 15 6 9.6568 2.5151 -3.1924 16 6 10.9888 2.2395 -3.9336 17 7 10.9984 0.7833 -4.1637 18 6 12.1145 0.0119 -4.3492 19 1 12.0154 -1.0513 -4.5107 20 6 13.3734 0.5967 -4.3298 21 7 13.4941 1.8925 -4.1335 22 14 14.8960 -0.4557 -4.5822 23 1 15.2201 -0.5180 -6.0300 24 1 16.0382 0.1414 -3.8444 25 1 14.6400 -1.8268 -4.0726 26 6 9.6111 0.2963 -4.1602 27 1 9.4814 -0.4476 -3.3742 28 6 9.2710 -0.3152 -5.5208 29 16 3.8643 2.4102 -1.8646 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 2.6614 2.7670 1.4424 34 1 2.8829 1.0775 1.9563 35 1 1.2568 1.8016 1.9563 36 1 6.1596 -0.2463 -1.1515 37 1 7.6664 0.3509 -2.4415 38 1 9.3275 3.5422 -3.3494 39 1 9.7485 2.2942 -2.1289 40 1 11.0120 2.7738 -4.8833 41 1 11.8359 2.5310 -3.3126 42 1 14.3737 2.3012 -4.1203 43 1 9.4222 0.4297 -6.3020 44 1 9.9182 -1.1723 -5.7060 45 1 8.2300 -0.6386 -5.5237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088569578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -27.147742 kcal Electronic energy + Delta-G solvation = -26712.019363 eV Core-core repulsion = 22856.685234 eV Total energy + Delta-G solvation = -3855.334129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45314 -40.62566 -39.23877 -38.87269 -35.69454 -34.08723 -33.39951 -32.08918 -31.25228 -30.03591 -27.80381 -27.09492 -26.31579 -25.79771 -24.06769 -22.89299 -21.96256 -21.60236 -20.57807 -19.39737 -18.73276 -18.47790 -17.45316 -17.14107 -16.73958 -16.48011 -16.44318 -16.11195 -15.75130 -15.60724 -15.32637 -15.16073 -14.81513 -14.37606 -14.14603 -14.00489 -13.77934 -13.57597 -13.25892 -13.24766 -12.93303 -12.76753 -12.72618 -12.62302 -12.58671 -12.25670 -12.14507 -11.98768 -11.97530 -11.58450 -11.56189 -11.43708 -10.89122 -10.73056 -10.66634 -10.51426 -10.19966 -9.99002 -8.89811 -7.74311 -5.19245 -0.92218 -0.03622 0.51295 1.31340 1.49008 1.50304 1.58725 2.04566 2.05221 2.52477 2.78096 2.97303 3.36234 3.50864 3.69091 3.72262 3.81838 3.93507 4.03125 4.04859 4.10296 4.18789 4.49498 4.49903 4.58762 4.60980 4.64554 4.68203 4.79408 4.80964 4.90009 4.91963 4.93495 5.03320 5.09934 5.23818 5.33008 5.50670 5.55978 5.60389 5.80615 6.11378 6.31025 6.35986 6.54637 7.02335 7.11670 7.79205 8.42474 9.27583 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026966 B = 0.002133 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.098633 B =13121.685768 C =13372.381263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.394 6.394 3 C 0.159 3.841 4 H 0.110 0.890 5 C -0.165 4.165 6 C 0.038 3.962 7 N -0.478 5.478 8 C 0.104 3.896 9 C -0.314 4.314 10 C 0.598 3.402 11 O -0.574 6.574 12 N -0.690 5.690 13 C 0.155 3.845 14 H 0.084 0.916 15 C -0.138 4.138 16 C 0.157 3.843 17 N -0.613 5.613 18 C -0.225 4.225 19 H 0.086 0.914 20 C -0.071 4.071 21 N -0.951 5.951 22 Si 0.978 3.022 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.267 1.267 26 C 0.151 3.849 27 H 0.055 0.945 28 C -0.148 4.148 29 S 0.259 5.741 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.204 0.796 37 H 0.414 0.586 38 H 0.066 0.934 39 H 0.070 0.930 40 H -0.013 1.013 41 H 0.078 0.922 42 H 0.246 0.754 43 H 0.036 0.964 44 H 0.048 0.952 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.212 -1.366 10.164 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.313 6.313 3 C 0.098 3.902 4 H 0.128 0.872 5 C -0.224 4.224 6 C -0.236 4.236 7 N -0.192 5.192 8 C -0.055 4.055 9 C -0.439 4.439 10 C 0.384 3.616 11 O -0.455 6.455 12 N -0.341 5.341 13 C 0.049 3.951 14 H 0.102 0.898 15 C -0.178 4.178 16 C 0.032 3.968 17 N -0.339 5.339 18 C -0.353 4.353 19 H 0.104 0.896 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.807 3.193 23 H -0.218 1.218 24 H -0.224 1.224 25 H -0.192 1.192 26 C 0.044 3.956 27 H 0.072 0.928 28 C -0.207 4.207 29 S 0.518 5.482 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.220 0.780 37 H 0.252 0.748 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.005 0.995 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.545 -0.318 9.605 30.119 hybrid contribution 1.991 -1.050 -0.171 2.257 sum -26.554 -1.368 9.434 28.213 Atomic orbital electron populations 1.23101 0.78724 1.04212 1.01564 1.88052 1.21775 1.26343 1.95133 1.20776 0.86559 0.86739 0.96114 0.87202 1.22262 1.04206 1.02092 0.93827 1.27930 1.00861 0.95368 0.99481 1.66137 1.01422 1.26553 1.25081 1.22602 0.96335 0.95921 0.90666 1.25672 1.02684 1.05075 1.10435 1.16877 0.81277 0.82538 0.80926 1.90829 1.81722 1.27810 1.45108 1.45591 1.15496 1.29226 1.43797 1.21805 0.85236 0.95207 0.92845 0.89782 1.23208 0.96015 0.98740 0.99846 1.21680 0.95306 0.83941 0.95916 1.44718 1.00575 1.04193 1.84369 1.19385 0.84213 0.91458 1.40289 0.89607 1.25618 1.00413 0.97171 1.03073 1.70039 1.21911 1.10252 1.57865 0.85074 0.78990 0.78140 0.77101 1.21778 1.22351 1.19157 1.21187 0.84159 0.93530 0.96682 0.92753 1.22136 1.00756 1.00355 0.97443 1.83888 1.06163 1.24995 1.33117 0.92594 0.88669 0.91960 0.90168 0.92488 0.89021 0.77963 0.74824 0.91491 0.91152 0.99542 0.90387 0.94474 0.94450 0.93238 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.82 113.37 1.23 1.39 16 2 O -0.39 -6.53 10.32 -148.98 -1.54 -8.06 16 3 C 0.16 2.14 3.23 29.85 0.10 2.24 16 4 H 0.11 0.83 7.78 -2.39 -0.02 0.81 16 5 C -0.16 -1.77 9.51 71.98 0.68 -1.09 16 6 C 0.04 0.72 6.28 88.46 0.56 1.27 16 7 N -0.48 -10.76 10.49 -190.31 -2.00 -12.75 16 8 C 0.10 2.18 10.93 84.23 0.92 3.10 16 9 C -0.31 -7.47 6.48 23.88 0.15 -7.32 16 10 C 0.60 17.60 7.78 86.45 0.67 18.27 16 11 O -0.57 -21.11 16.69 -4.29 -0.07 -21.18 16 12 N -0.69 -19.06 5.19 -440.85 -2.29 -21.35 16 13 C 0.15 5.41 2.76 46.18 0.13 5.54 16 14 H 0.08 3.18 7.41 -2.39 -0.02 3.16 16 15 C -0.14 -5.45 6.77 31.99 0.22 -5.24 16 16 C 0.16 7.82 5.89 86.85 0.51 8.33 16 17 N -0.61 -30.28 3.13 -668.25 -2.09 -32.37 16 18 C -0.22 -12.08 9.89 84.03 0.83 -11.25 16 19 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 21 N -0.95 -56.38 10.09 21.65 0.22 -56.17 16 22 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.15 5.77 3.48 45.34 0.16 5.92 16 27 H 0.05 1.92 7.68 -2.39 -0.02 1.90 16 28 C -0.15 -5.17 9.14 71.98 0.66 -4.51 16 29 S 0.26 5.01 23.01 -56.49 -1.30 3.71 16 30 H 0.06 0.32 8.09 -2.39 -0.02 0.30 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.29 7.87 -2.39 -0.02 0.27 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.59 7.87 -2.38 -0.02 0.57 16 36 H 0.20 3.14 7.15 -2.91 -0.02 3.12 16 37 H 0.41 8.95 7.02 -92.72 -0.65 8.30 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.08 4.40 5.87 -2.38 -0.01 4.39 16 42 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 45 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -72.63 384.28 0.60 -72.03 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.36 Total: 15.75 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 7.28 Total: 13.19 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -6.15 Total: -122.64 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -1.61 Total: -29.24 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.30 Total: 3.71 kcal Total: -72.63 0.60 -72.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088569578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.881 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds