Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42908 * 113.99766 * 2 1 4 4 C 1.50701 * 109.46717 * 180.02562 * 3 2 1 5 5 N 1.29427 * 124.80619 * 90.02506 * 4 3 2 6 6 C 1.30944 * 117.35862 * 179.68779 * 5 4 3 7 7 C 1.35656 * 114.19496 * 0.51575 * 6 5 4 8 8 C 1.46684 * 126.13437 * 179.79225 * 7 6 5 9 9 O 1.21685 * 119.99702 * 359.71042 * 8 7 6 10 10 N 1.34778 * 120.00587 * 179.72110 * 8 7 6 11 11 C 1.46490 * 120.00109 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47021 * 179.97438 * 11 10 8 13 13 H 1.08993 * 110.91543 * 51.09254 * 12 11 10 14 14 C 1.54913 * 111.00185 * 287.19367 * 12 11 10 15 15 N 1.47425 * 104.83172 * 204.91813 * 14 12 11 16 16 C 1.36934 * 125.64598 * 204.16741 * 15 14 12 17 17 H 1.08001 * 120.00082 * 359.97438 * 16 15 14 18 18 C 1.38818 * 120.00056 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99528 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00255 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47125 * 60.00153 * 20 18 16 22 22 H 1.48500 * 109.47216 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47141 * 300.00176 * 20 18 16 24 24 C 1.47016 * 108.70144 * 24.12623 * 15 14 12 25 25 C 1.54322 * 107.27584 * 358.94568 * 24 15 14 26 26 H 1.08994 * 110.72057 * 96.34399 * 25 24 15 27 27 C 1.53006 * 110.71873 * 219.44305 * 25 24 15 28 28 S 1.70955 * 124.80042 * 269.99322 * 4 3 2 29 29 H 1.08998 * 109.46965 * 60.00303 * 1 2 3 30 30 H 1.09003 * 109.46804 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47121 * 300.00191 * 1 2 3 32 32 H 1.08998 * 109.47381 * 59.99737 * 3 2 1 33 33 H 1.08996 * 109.46665 * 299.99482 * 3 2 1 34 34 H 1.08005 * 122.89981 * 180.34877 * 6 5 4 35 35 H 0.96998 * 119.99319 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47511 * 59.99549 * 11 10 8 37 37 H 1.08997 * 109.47250 * 299.99462 * 11 10 8 38 38 H 1.08996 * 110.36871 * 86.07638 * 14 12 11 39 39 H 1.08998 * 110.36705 * 323.75587 * 14 12 11 40 40 H 0.97004 * 119.99644 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.88603 * 239.52323 * 24 15 14 42 42 H 1.09005 * 110.00815 * 118.43507 * 24 15 14 43 43 H 1.08994 * 109.47357 * 58.54604 * 27 25 24 44 44 H 1.08998 * 109.46865 * 178.54365 * 27 25 24 45 45 H 1.08994 * 109.46919 * 298.54190 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2486 1.1288 -1.0637 6 6 5.5435 1.0325 -0.8945 7 6 5.9333 0.9955 0.4043 8 6 7.3129 0.8865 0.8906 9 8 8.2334 0.8145 0.0981 10 7 7.5610 0.8660 2.2152 11 6 8.9388 0.7566 2.7008 12 6 8.9417 0.7560 4.2308 13 1 8.2425 0.0166 4.6210 14 6 8.6258 2.1668 4.7872 15 7 9.2386 2.1897 6.1279 16 6 8.8567 2.9966 7.1662 17 1 8.0409 3.6925 7.0375 18 6 9.5182 2.9201 8.3843 19 7 10.5120 2.0716 8.5412 20 14 8.9977 4.0213 9.8005 21 1 7.5792 3.7478 10.1448 22 1 9.8549 3.7470 10.9817 23 1 9.1447 5.4440 9.4012 24 6 10.3269 1.2020 6.1657 25 6 10.3713 0.5159 4.7840 26 1 11.1191 0.9848 4.1445 27 6 10.6502 -0.9812 4.9318 28 16 4.4858 1.1094 1.4027 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 6.2407 0.9838 -1.7179 35 1 6.8272 0.9236 2.8470 36 1 9.5206 1.6036 2.3370 37 1 9.3801 -0.1708 2.3359 38 1 7.5482 2.3134 4.8601 39 1 9.0717 2.9332 4.1533 40 1 10.9745 2.0184 9.3923 41 1 10.1291 0.4617 6.9409 42 1 11.2761 1.7003 6.3628 43 1 9.8756 -1.4359 5.5492 44 1 10.6515 -1.4494 3.9474 45 1 11.6221 -1.1249 5.4037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093257595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = -11.964657 kcal Electronic energy + Delta-G solvation = -26374.092147 eV Core-core repulsion = 22519.416406 eV Total energy + Delta-G solvation = -3854.675741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44988 -39.45984 -38.25766 -37.93385 -34.79136 -33.01242 -31.97493 -30.75978 -29.79365 -28.53579 -26.68970 -25.99906 -25.22850 -24.29854 -23.02343 -21.75394 -20.29461 -19.89268 -19.30090 -18.73519 -17.27918 -17.09479 -16.78535 -16.35191 -15.93994 -15.69471 -15.44952 -15.05036 -14.62842 -14.45973 -14.19389 -13.85089 -13.73995 -13.21665 -13.15171 -12.95525 -12.85728 -12.56093 -11.98359 -11.91766 -11.86571 -11.70696 -11.44050 -11.24143 -10.83337 -10.80076 -10.52301 -10.30398 -10.17909 -10.07108 -10.04110 -9.93943 -9.85761 -9.75708 -9.58829 -9.38220 -9.07938 -8.61962 -6.85561 -5.73108 -3.06842 -0.16288 0.78000 1.21420 2.09012 2.96722 2.99117 3.22376 3.38535 3.42876 3.44264 3.86273 4.38486 4.46860 4.59578 4.75840 4.80318 4.86224 4.91234 4.96416 5.07213 5.16218 5.20660 5.28586 5.50293 5.53458 5.71425 5.72692 5.82581 5.98291 6.04020 6.15524 6.23862 6.29815 6.46029 6.47734 6.53202 6.59726 6.72038 6.90174 7.20004 7.34485 7.54249 7.62075 7.81766 7.98195 8.24025 9.20018 9.80262 10.46358 11.38374 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.002453 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.679784 B =11409.961097 C =12924.797232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.137 3.863 4 C 0.045 3.955 5 N -0.460 5.460 6 C 0.115 3.885 7 C -0.283 4.283 8 C 0.593 3.407 9 O -0.526 6.526 10 N -0.716 5.716 11 C 0.132 3.868 12 C -0.114 4.114 13 H 0.081 0.919 14 C 0.141 3.859 15 N -0.606 5.606 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.184 3.816 25 C -0.110 4.110 26 H 0.068 0.932 27 C -0.135 4.135 28 S 0.204 5.796 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.191 0.809 35 H 0.399 0.601 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.020 0.980 40 H 0.253 0.747 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.053 0.947 44 H 0.044 0.956 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.266 -4.479 -16.380 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.057 3.943 4 C -0.230 4.230 5 N -0.175 5.175 6 C -0.043 4.043 7 C -0.408 4.408 8 C 0.378 3.622 9 O -0.405 6.405 10 N -0.367 5.367 11 C 0.009 3.991 12 C -0.134 4.134 13 H 0.100 0.900 14 C 0.015 3.985 15 N -0.332 5.332 16 C -0.358 4.358 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.059 3.941 25 C -0.130 4.130 26 H 0.087 0.913 27 C -0.192 4.192 28 S 0.460 5.540 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.208 0.792 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.928 -4.619 -16.076 23.097 hybrid contribution -0.193 0.796 0.381 0.903 sum -16.121 -3.823 -15.695 22.822 Atomic orbital electron populations 1.22830 0.79717 1.03490 1.00470 1.87968 1.20535 1.26043 1.95559 1.20844 0.84226 0.86313 1.02900 1.26933 1.00692 1.03635 0.91748 1.66165 1.04918 1.15230 1.31223 1.22184 0.90539 0.95961 0.95633 1.25985 0.98460 1.18280 0.98068 1.16680 0.85737 0.77031 0.82785 1.90846 1.44224 1.50212 1.55186 1.46001 1.10717 1.74036 1.05931 1.21506 0.81019 1.02331 0.94208 1.22707 0.99173 0.99866 0.91667 0.90049 1.21593 0.96251 0.92666 0.88017 1.44446 1.36993 1.44103 1.07659 1.18997 1.13526 1.13879 0.89408 0.90556 1.24806 0.98284 0.99494 0.97845 1.69952 1.24127 1.38414 1.24371 0.86201 0.77651 0.80056 0.81847 1.21183 1.21595 1.21188 1.21219 0.91887 0.91023 0.89980 1.22442 0.94347 0.96124 1.00068 0.91314 1.21696 1.01717 0.95389 1.00413 1.84022 0.96308 1.63247 1.10412 0.93504 0.88989 0.93498 0.90428 0.89672 0.79198 0.76607 0.90875 0.91123 0.94671 0.96264 0.93686 0.93278 0.93992 0.92760 0.93650 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.31 10.69 -35.23 -0.38 -3.69 16 3 C 0.14 1.00 6.51 36.01 0.23 1.24 16 4 C 0.04 0.44 7.01 -13.29 -0.09 0.35 16 5 N -0.46 -5.34 10.51 -11.50 -0.12 -5.46 16 6 C 0.11 1.34 11.09 -18.85 -0.21 1.13 16 7 C -0.28 -3.36 6.48 -37.10 -0.24 -3.60 16 8 C 0.59 8.24 7.79 -12.85 -0.10 8.14 16 9 O -0.53 -8.85 16.87 5.20 0.09 -8.76 16 10 N -0.72 -9.27 5.50 -61.62 -0.34 -9.61 16 11 C 0.13 1.87 5.14 -4.04 -0.02 1.85 16 12 C -0.11 -1.85 2.50 -88.47 -0.22 -2.07 16 13 H 0.08 1.29 8.04 -51.93 -0.42 0.88 16 14 C 0.14 2.77 6.65 -2.53 -0.02 2.75 16 15 N -0.61 -15.08 3.39 -170.07 -0.58 -15.66 16 16 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -26.72 10.31 55.49 0.57 -26.15 16 20 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.18 4.32 4.97 -3.07 -0.02 4.30 16 25 C -0.11 -1.95 3.01 -88.78 -0.27 -2.21 16 26 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 27 C -0.13 -2.05 9.13 37.16 0.34 -1.71 16 28 S 0.20 1.92 22.31 -107.50 -2.40 -0.47 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.19 1.99 8.06 -52.48 -0.42 1.56 16 35 H 0.40 4.58 7.66 -40.82 -0.31 4.26 16 36 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 41 H 0.05 1.28 7.06 -51.93 -0.37 0.91 16 42 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 43 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -33.28 387.27 -9.01 -42.29 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.92 Total: 0.21 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 0.25 Total: 4.67 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.46 Total: -56.88 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.29 Total: -12.45 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.40 Total: -0.47 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.28 -9.01 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093257595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.325 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds