Wall clock time and date at job start Sat Apr 11 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35960 * 116.99738 * 2 1 4 4 C 1.37572 * 120.82203 * 179.74386 * 3 2 1 5 5 C 1.38043 * 114.24845 * 179.76764 * 4 3 2 6 6 C 1.47118 * 127.75870 * 180.20503 * 5 4 3 7 7 O 1.21625 * 120.00237 * 355.46703 * 6 5 4 8 8 N 1.34781 * 119.99648 * 175.45939 * 6 5 4 9 9 C 1.48110 * 127.03401 * 185.20041 * 8 6 5 10 10 C 1.54598 * 103.42658 * 219.28880 * 9 8 6 11 11 H 1.09003 * 110.57267 * 81.17035 * 10 9 8 12 12 C 1.52996 * 110.99108 * 204.37104 * 10 9 8 13 13 C 1.54612 * 102.90787 * 322.86796 * 10 9 8 14 14 H 1.09002 * 110.32793 * 262.80378 * 13 10 9 15 15 C 1.53002 * 110.41381 * 140.63682 * 13 10 9 16 16 C 1.53002 * 109.47361 * 177.87364 * 15 13 10 17 17 N 1.46500 * 109.47009 * 179.97438 * 16 15 13 18 18 C 1.36934 * 119.99675 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00506 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99978 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00410 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47130 * 59.99331 * 22 20 18 24 24 H 1.48497 * 109.47631 * 179.97438 * 22 20 18 25 25 H 1.48510 * 109.46940 * 299.99954 * 22 20 18 26 26 C 1.47486 * 127.03444 * 5.51998 * 8 6 5 27 27 S 1.77230 * 104.47868 * 0.43446 * 5 4 3 28 28 N 1.30355 * 120.82939 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47325 * 60.00358 * 1 2 3 31 31 H 1.08999 * 109.47551 * 300.00154 * 1 2 3 32 32 H 1.08003 * 122.87704 * 359.97359 * 4 3 2 33 33 H 1.09011 * 110.66300 * 337.77167 * 9 8 6 34 34 H 1.08998 * 110.66787 * 100.88466 * 9 8 6 35 35 H 1.09000 * 109.46907 * 173.65307 * 12 10 9 36 36 H 1.09002 * 109.47260 * 293.65207 * 12 10 9 37 37 H 1.09005 * 109.46818 * 53.65099 * 12 10 9 38 38 H 1.09003 * 109.46987 * 297.87385 * 15 13 10 39 39 H 1.09000 * 109.47269 * 57.86977 * 15 13 10 40 40 H 1.08997 * 109.46841 * 299.99596 * 16 15 13 41 41 H 1.09000 * 109.47245 * 59.99598 * 16 15 13 42 42 H 0.96997 * 120.00063 * 0.02562 * 17 16 15 43 43 H 0.97001 * 120.00331 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.91315 * 273.87138 * 26 8 6 45 45 H 1.09001 * 109.91623 * 35.15499 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 3.4188 1.3032 0.0053 5 6 3.9005 2.5968 -0.0005 6 6 5.3049 3.0352 -0.0014 7 8 6.1982 2.2145 0.0866 8 7 5.6015 4.3462 -0.0999 9 6 6.9487 4.9492 -0.2229 10 6 6.8583 6.2135 0.6622 11 1 6.9994 5.9569 1.7122 12 6 7.8787 7.2650 0.2218 13 6 5.4162 6.7101 0.4088 14 1 5.4135 7.4953 -0.3472 15 6 4.7923 7.2229 1.7084 16 6 3.3872 7.7572 1.4235 17 7 2.7896 8.2475 2.6680 18 6 1.5264 8.7760 2.6591 19 1 0.9705 8.8310 1.7348 20 6 0.9604 9.2412 3.8382 21 7 1.6377 9.1738 4.9647 22 14 -0.7631 9.9615 3.8263 23 1 -1.7246 8.9366 3.3465 24 1 -1.1335 10.3819 5.2015 25 1 -0.8015 11.1384 2.9212 26 6 4.6514 5.4743 -0.1005 27 16 2.4470 3.6109 0.0001 28 7 1.3520 2.3148 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8899 32 1 4.0643 0.4373 0.0100 33 1 7.7109 4.2686 0.1567 34 1 7.1554 5.2209 -1.2581 35 1 7.7192 8.1844 0.7851 36 1 8.8865 6.8942 0.4093 37 1 7.7575 7.4653 -0.8428 38 1 4.7317 6.4072 2.4289 39 1 5.4095 8.0232 2.1167 40 1 3.4478 8.5728 0.7031 41 1 2.7700 6.9569 1.0152 42 1 3.2891 8.1985 3.4981 43 1 1.2423 9.4991 5.7886 44 1 4.2886 5.6535 -1.1126 45 1 3.8150 5.2557 0.5633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104209535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:27 Heat of formation + Delta-G solvation = -12.188477 kcal Electronic energy + Delta-G solvation = -27087.429474 eV Core-core repulsion = 23232.744028 eV Total energy + Delta-G solvation = -3854.685447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56201 -40.18900 -38.31881 -36.55249 -35.14336 -33.50181 -32.33267 -31.39994 -30.20054 -28.41265 -27.26991 -27.00334 -24.85731 -24.11161 -22.61534 -21.65921 -20.61028 -20.27330 -19.31276 -18.68022 -17.85289 -17.09963 -16.56793 -16.41020 -16.35760 -15.78946 -14.99972 -14.71716 -14.70432 -14.52569 -14.00681 -13.72218 -13.65356 -13.49086 -13.28239 -13.07618 -12.87884 -12.56706 -12.37579 -12.25285 -11.96313 -11.59441 -11.55484 -11.33174 -11.20192 -11.04824 -10.92213 -10.75704 -10.64533 -10.55842 -10.37812 -10.25929 -10.00845 -9.93421 -9.67728 -8.99508 -8.87142 -8.55748 -6.93108 -5.76889 -3.05730 -0.06422 0.98241 1.39492 2.02066 2.39004 2.79181 3.03482 3.43782 3.48269 3.49158 4.03900 4.34495 4.43972 4.52646 4.66891 4.67312 4.92017 4.95759 5.02106 5.03603 5.12841 5.25979 5.30479 5.34525 5.40294 5.45340 5.48328 5.51263 5.57340 5.60974 5.73380 5.83321 5.91964 5.95660 5.99061 6.05047 6.21464 6.32159 6.35128 6.78059 6.80342 6.82673 7.12755 7.68916 7.71921 8.41988 9.53108 10.10968 10.45032 11.45954 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007718 B = 0.003878 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.991974 B = 7217.615372 C =10422.341665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.298 6.298 3 C 0.300 3.700 4 C -0.126 4.126 5 C -0.193 4.193 6 C 0.616 3.384 7 O -0.521 6.521 8 N -0.612 5.612 9 C 0.112 3.888 10 C -0.104 4.104 11 H 0.087 0.913 12 C -0.140 4.140 13 C -0.087 4.087 14 H 0.093 0.907 15 C -0.121 4.121 16 C 0.150 3.850 17 N -0.733 5.733 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.089 3.911 27 S 0.326 5.674 28 N -0.522 5.522 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.176 0.824 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.080 0.920 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.474 -13.379 -13.809 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.204 6.204 3 C 0.087 3.913 4 C -0.165 4.165 5 C -0.325 4.325 6 C 0.403 3.597 7 O -0.398 6.398 8 N -0.345 5.345 9 C -0.010 4.010 10 C -0.123 4.123 11 H 0.106 0.894 12 C -0.198 4.198 13 C -0.107 4.107 14 H 0.111 0.889 15 C -0.159 4.159 16 C 0.023 3.977 17 N -0.377 5.377 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.035 4.035 27 S 0.478 5.522 28 N -0.362 5.362 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.193 0.807 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.348 -12.555 -13.809 20.057 hybrid contribution -0.344 -0.946 0.409 1.087 sum 7.004 -13.501 -13.400 20.270 Atomic orbital electron populations 1.22981 0.76632 1.03513 1.02768 1.86279 1.23058 1.22706 1.88396 1.19856 0.89665 0.85357 0.96435 1.20686 0.92440 0.98319 1.05046 1.25895 0.99296 0.98086 1.09177 1.16154 0.85523 0.81048 0.77015 1.90839 1.47119 1.51777 1.50106 1.48567 1.09989 1.04347 1.71626 1.22577 0.83924 0.94258 1.00231 1.22331 0.94899 0.94514 1.00570 0.89420 1.21725 0.98030 0.98498 1.01529 1.22136 0.93522 0.95710 0.99306 0.88873 1.21847 0.97680 1.01033 0.95308 1.20714 0.90664 0.95733 0.90604 1.42341 1.16396 1.73888 1.05091 1.19176 0.91601 1.32348 0.94030 0.91235 1.24729 0.98511 1.02090 0.95542 1.69646 1.37470 1.52677 0.98435 0.86292 0.84496 0.79021 0.76538 1.21261 1.21676 1.21235 1.22643 0.92617 0.86057 1.02230 1.85622 0.88801 1.10135 1.67679 1.76387 1.28422 1.01953 1.29428 0.88058 0.92113 0.91945 0.80669 0.89395 0.90349 0.91579 0.92377 0.92300 0.91739 0.91072 0.96277 0.96449 0.78298 0.93466 0.90191 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.43 101.05 1.05 1.38 16 2 O -0.30 -3.46 10.51 -19.61 -0.21 -3.66 16 3 C 0.30 3.86 7.36 -18.42 -0.14 3.72 16 4 C -0.13 -1.55 10.10 -39.90 -0.40 -1.95 16 5 C -0.19 -2.47 6.62 -36.05 -0.24 -2.71 16 6 C 0.62 8.30 7.87 -12.66 -0.10 8.20 16 7 O -0.52 -8.24 17.14 5.26 0.09 -8.15 16 8 N -0.61 -7.08 3.29 -171.36 -0.56 -7.64 16 9 C 0.11 1.06 6.54 -2.32 -0.02 1.04 16 10 C -0.10 -0.95 3.18 -88.93 -0.28 -1.24 16 11 H 0.09 0.89 7.87 -51.93 -0.41 0.49 16 12 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 13 C -0.09 -0.92 2.61 -89.25 -0.23 -1.16 16 14 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 15 C -0.12 -1.73 4.53 -26.73 -0.12 -1.85 16 16 C 0.15 2.79 6.08 -4.04 -0.02 2.76 16 17 N -0.73 -18.11 5.60 -59.91 -0.34 -18.44 16 18 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 22 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.09 0.98 4.92 -2.98 -0.01 0.96 16 27 S 0.33 4.24 19.98 -107.50 -2.15 2.09 16 28 N -0.52 -7.28 11.03 29.19 0.32 -6.96 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.18 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.09 0.87 7.81 -51.92 -0.41 0.46 16 34 H 0.08 0.61 8.02 -51.93 -0.42 0.20 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.39 8.11 -51.93 -0.42 -0.04 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.32 6.88 -51.93 -0.36 -0.03 16 42 H 0.38 10.01 7.67 -40.82 -0.31 9.69 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 1.07 3.97 -37.45 -0.15 0.92 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -33.15 382.03 -8.45 -41.60 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.65 Total: 4.30 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.42 Total: 1.21 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.15 Total: -60.42 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.12 Total: -11.82 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -2.15 Total: 2.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.15 -8.45 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104209535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.416 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds