Wall clock time and date at job start Sat Apr 11 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35960 * 116.99738 * 2 1 4 4 C 1.37572 * 120.82203 * 179.74386 * 3 2 1 5 5 C 1.38043 * 114.24845 * 179.76764 * 4 3 2 6 6 C 1.47118 * 127.75870 * 180.20503 * 5 4 3 7 7 O 1.21625 * 120.00237 * 355.46703 * 6 5 4 8 8 N 1.34781 * 119.99648 * 175.45939 * 6 5 4 9 9 C 1.48110 * 127.03401 * 185.20041 * 8 6 5 10 10 C 1.54598 * 103.42658 * 219.28880 * 9 8 6 11 11 H 1.09003 * 110.57267 * 81.17035 * 10 9 8 12 12 C 1.52996 * 110.99108 * 204.37104 * 10 9 8 13 13 C 1.54612 * 102.90787 * 322.86796 * 10 9 8 14 14 H 1.09002 * 110.32793 * 262.80378 * 13 10 9 15 15 C 1.53002 * 110.41381 * 140.63682 * 13 10 9 16 16 C 1.53002 * 109.47361 * 177.87364 * 15 13 10 17 17 N 1.46500 * 109.47009 * 179.97438 * 16 15 13 18 18 C 1.36934 * 119.99675 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00506 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99978 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00410 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47130 * 59.99331 * 22 20 18 24 24 H 1.48497 * 109.47631 * 179.97438 * 22 20 18 25 25 H 1.48510 * 109.46940 * 299.99954 * 22 20 18 26 26 C 1.47486 * 127.03444 * 5.51998 * 8 6 5 27 27 S 1.77230 * 104.47868 * 0.43446 * 5 4 3 28 28 N 1.30355 * 120.82939 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47325 * 60.00358 * 1 2 3 31 31 H 1.08999 * 109.47551 * 300.00154 * 1 2 3 32 32 H 1.08003 * 122.87704 * 359.97359 * 4 3 2 33 33 H 1.09011 * 110.66300 * 337.77167 * 9 8 6 34 34 H 1.08998 * 110.66787 * 100.88466 * 9 8 6 35 35 H 1.09000 * 109.46907 * 173.65307 * 12 10 9 36 36 H 1.09002 * 109.47260 * 293.65207 * 12 10 9 37 37 H 1.09005 * 109.46818 * 53.65099 * 12 10 9 38 38 H 1.09003 * 109.46987 * 297.87385 * 15 13 10 39 39 H 1.09000 * 109.47269 * 57.86977 * 15 13 10 40 40 H 1.08997 * 109.46841 * 299.99596 * 16 15 13 41 41 H 1.09000 * 109.47245 * 59.99598 * 16 15 13 42 42 H 0.96997 * 120.00063 * 0.02562 * 17 16 15 43 43 H 0.97001 * 120.00331 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.91315 * 273.87138 * 26 8 6 45 45 H 1.09001 * 109.91623 * 35.15499 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 3.4188 1.3032 0.0053 5 6 3.9005 2.5968 -0.0005 6 6 5.3049 3.0352 -0.0014 7 8 6.1982 2.2145 0.0866 8 7 5.6015 4.3462 -0.0999 9 6 6.9487 4.9492 -0.2229 10 6 6.8583 6.2135 0.6622 11 1 6.9994 5.9569 1.7122 12 6 7.8787 7.2650 0.2218 13 6 5.4162 6.7101 0.4088 14 1 5.4135 7.4953 -0.3472 15 6 4.7923 7.2229 1.7084 16 6 3.3872 7.7572 1.4235 17 7 2.7896 8.2475 2.6680 18 6 1.5264 8.7760 2.6591 19 1 0.9705 8.8310 1.7348 20 6 0.9604 9.2412 3.8382 21 7 1.6377 9.1738 4.9647 22 14 -0.7631 9.9615 3.8263 23 1 -1.7246 8.9366 3.3465 24 1 -1.1335 10.3819 5.2015 25 1 -0.8015 11.1384 2.9212 26 6 4.6514 5.4743 -0.1005 27 16 2.4470 3.6109 0.0001 28 7 1.3520 2.3148 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8899 32 1 4.0643 0.4373 0.0100 33 1 7.7109 4.2686 0.1567 34 1 7.1554 5.2209 -1.2581 35 1 7.7192 8.1844 0.7851 36 1 8.8865 6.8942 0.4093 37 1 7.7575 7.4653 -0.8428 38 1 4.7317 6.4072 2.4289 39 1 5.4095 8.0232 2.1167 40 1 3.4478 8.5728 0.7031 41 1 2.7700 6.9569 1.0152 42 1 3.2891 8.1985 3.4981 43 1 1.2423 9.4991 5.7886 44 1 4.2886 5.6535 -1.1126 45 1 3.8150 5.2557 0.5633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104209535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:27 Heat of formation + Delta-G solvation = -35.575443 kcal Electronic energy + Delta-G solvation = -27088.443609 eV Core-core repulsion = 23232.744028 eV Total energy + Delta-G solvation = -3855.699582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52217 -41.11900 -39.32611 -37.50293 -36.79743 -34.65371 -33.75679 -32.44098 -31.72963 -29.24794 -28.52690 -27.84155 -26.09935 -25.34392 -24.07499 -22.68730 -21.82264 -21.13294 -20.30415 -19.63831 -19.10060 -18.77671 -17.51444 -17.39494 -17.27503 -16.77591 -16.59007 -15.93371 -15.75099 -15.57283 -15.30096 -15.09422 -14.82530 -14.63396 -14.41262 -14.27513 -13.76398 -13.60539 -13.34108 -13.07324 -13.02058 -12.82303 -12.73547 -12.55249 -12.43966 -12.29056 -12.18194 -12.13644 -11.95054 -11.85249 -11.61019 -11.49936 -11.32717 -11.21011 -10.96002 -10.87332 -9.91574 -9.53492 -8.95730 -7.92826 -5.20806 -1.06845 -0.01624 0.40112 1.02433 1.47029 1.48151 1.50747 1.56652 1.77586 2.15929 2.57806 3.11390 3.41170 3.46253 3.56825 3.64765 3.74696 4.05192 4.12250 4.26062 4.28563 4.30302 4.31580 4.42643 4.45851 4.48611 4.52021 4.68255 4.68864 4.79180 4.81260 4.82096 4.88521 4.94057 4.98720 5.14970 5.20038 5.32742 5.40639 5.44548 5.53232 5.57468 5.90057 6.15941 6.29997 6.71420 7.36212 8.14366 8.35289 9.30800 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007718 B = 0.003878 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3626.991974 B = 7217.615372 C =10422.341665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.299 3.701 4 C -0.126 4.126 5 C -0.194 4.194 6 C 0.613 3.387 7 O -0.551 6.551 8 N -0.609 5.609 9 C 0.110 3.890 10 C -0.096 4.096 11 H 0.074 0.926 12 C -0.136 4.136 13 C -0.078 4.078 14 H 0.115 0.885 15 C -0.107 4.107 16 C 0.147 3.853 17 N -0.749 5.749 18 C -0.242 4.242 19 H 0.077 0.923 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.968 3.032 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.086 3.914 27 S 0.323 5.677 28 N -0.543 5.543 29 H 0.134 0.866 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.189 0.811 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.024 0.976 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.103 0.897 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.775 -13.344 -15.692 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.209 6.209 3 C 0.086 3.914 4 C -0.164 4.164 5 C -0.326 4.326 6 C 0.400 3.600 7 O -0.430 6.430 8 N -0.341 5.341 9 C -0.010 4.010 10 C -0.115 4.115 11 H 0.092 0.908 12 C -0.194 4.194 13 C -0.098 4.098 14 H 0.133 0.867 15 C -0.145 4.145 16 C 0.021 3.979 17 N -0.391 5.391 18 C -0.374 4.374 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.798 3.202 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.201 1.201 26 C -0.038 4.038 27 S 0.474 5.526 28 N -0.384 5.384 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.206 0.794 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.204 0.796 43 H 0.059 0.941 44 H 0.121 0.879 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.652 -12.510 -15.746 21.517 hybrid contribution -0.427 -1.002 0.951 1.446 sum 7.225 -13.512 -14.795 21.300 Atomic orbital electron populations 1.23218 0.75203 1.05561 1.02323 1.86288 1.24488 1.22023 1.88092 1.20010 0.89942 0.85600 0.95825 1.20871 0.92460 0.98673 1.04382 1.25903 0.99062 0.98287 1.09343 1.16229 0.85359 0.81476 0.76895 1.90820 1.47787 1.52590 1.51843 1.48649 1.11142 1.03909 1.70371 1.22777 0.82702 0.93869 1.01700 1.22261 0.94396 0.94938 0.99935 0.90790 1.21709 0.97836 0.97432 1.02378 1.22088 0.94001 0.96010 0.97674 0.86680 1.21685 0.95450 1.00330 0.97070 1.20942 0.92705 0.95923 0.88343 1.42612 1.15824 1.73986 1.06703 1.19613 0.92697 1.30965 0.94148 0.90504 1.25521 1.02288 1.03534 0.95407 1.69804 1.39084 1.54458 0.98831 0.85286 0.80230 0.78541 0.76192 1.20628 1.22313 1.20129 1.22738 0.92065 0.85837 1.03185 1.85543 0.88829 1.10048 1.68147 1.76358 1.29137 1.02515 1.30423 0.84806 0.92144 0.92766 0.79388 0.89850 0.87798 0.92113 0.91389 0.90706 0.93244 0.91207 0.95400 0.95831 0.79626 0.94117 0.87902 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.43 113.37 1.18 1.71 16 2 O -0.30 -6.76 10.51 -93.09 -0.98 -7.74 16 3 C 0.30 7.57 7.36 84.75 0.62 8.19 16 4 C -0.13 -3.01 10.10 22.07 0.22 -2.79 16 5 C -0.19 -4.88 6.62 24.56 0.16 -4.72 16 6 C 0.61 16.09 7.87 86.57 0.68 16.77 16 7 O -0.55 -17.17 17.14 -4.11 -0.07 -17.24 16 8 N -0.61 -13.15 3.29 -814.31 -2.68 -15.83 16 9 C 0.11 1.83 6.54 86.61 0.57 2.40 16 10 C -0.10 -1.56 3.18 -9.70 -0.03 -1.59 16 11 H 0.07 1.43 7.87 -2.39 -0.02 1.41 16 12 C -0.14 -1.62 9.17 71.98 0.66 -0.96 16 13 C -0.08 -1.48 2.61 -9.91 -0.03 -1.51 16 14 H 0.12 1.77 7.85 -2.39 -0.02 1.75 16 15 C -0.11 -2.97 4.53 30.60 0.14 -2.83 16 16 C 0.15 5.30 6.08 86.38 0.53 5.83 16 17 N -0.75 -37.06 5.60 -343.45 -1.92 -38.98 16 18 C -0.24 -13.33 9.99 84.03 0.84 -12.49 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 21 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 22 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 C 0.09 1.72 4.92 86.53 0.43 2.15 16 27 S 0.32 8.27 19.98 -56.49 -1.13 7.14 16 28 N -0.54 -15.05 11.03 -175.22 -1.93 -16.98 16 29 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 32 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.08 1.51 7.81 -2.38 -0.02 1.49 16 34 H 0.10 1.25 8.02 -2.39 -0.02 1.23 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.68 8.11 -2.38 -0.02 0.66 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.02 0.84 6.88 -2.39 -0.02 0.82 16 42 H 0.37 19.79 7.67 -92.71 -0.71 19.08 16 43 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.66 3.97 -11.59 -0.05 1.62 16 Total: -1.00 -71.39 382.03 0.29 -71.09 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.26 Total: 23.42 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 6.44 Total: 6.30 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -6.26 Total: -130.89 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -1.05 Total: -24.98 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 8.27 SS G_CDS: -1.13 Total: 7.14 kcal Total: -71.39 0.29 -71.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104209535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.517 kcal (2) G-P(sol) polarization free energy of solvation -71.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds