Wall clock time and date at job start Sat Apr 11 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.50694 * 109.47047 * 180.02562 * 3 2 1 5 5 N 1.28648 * 124.72331 * 89.72466 * 4 3 2 6 6 C 1.33565 * 115.76878 * 179.78358 * 5 4 3 7 7 C 1.47258 * 123.14098 * 180.23476 * 6 5 4 8 8 O 1.21634 * 120.00244 * 180.28943 * 7 6 5 9 9 N 1.34778 * 120.00218 * 0.28718 * 7 6 5 10 10 C 1.48120 * 127.03456 * 179.71083 * 9 7 6 11 11 C 1.54594 * 103.42172 * 219.28374 * 10 9 7 12 12 H 1.09003 * 110.57443 * 81.17309 * 11 10 9 13 13 C 1.53006 * 110.98859 * 204.37297 * 11 10 9 14 14 N 1.46506 * 109.46779 * 288.65431 * 13 11 10 15 15 C 1.36936 * 119.99392 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00729 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99536 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99866 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47281 * 59.99622 * 19 17 15 21 21 H 1.48505 * 109.46622 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47232 * 299.99354 * 19 17 15 23 23 C 1.54614 * 102.91316 * 322.86703 * 11 10 9 24 24 H 1.09002 * 110.32547 * 262.80505 * 23 11 10 25 25 C 1.52998 * 110.41519 * 140.63709 * 23 11 10 26 26 C 1.47488 * 127.03359 * 0.02562 * 9 7 6 27 27 C 1.35207 * 113.71394 * 0.49888 * 6 5 4 28 28 S 1.70766 * 124.71837 * 270.02468 * 4 3 2 29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 32 32 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 33 33 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 34 34 H 1.08999 * 110.66237 * 337.76532 * 10 9 7 35 35 H 1.09002 * 110.66340 * 100.88526 * 10 9 7 36 36 H 1.08999 * 109.46807 * 48.64916 * 13 11 10 37 37 H 1.08993 * 109.47157 * 168.65307 * 13 11 10 38 38 H 0.97001 * 119.99884 * 359.97438 * 14 13 11 39 39 H 0.97000 * 119.99371 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.46816 * 302.87206 * 25 23 11 41 41 H 1.08997 * 109.47527 * 62.87080 * 25 23 11 42 42 H 1.09001 * 109.47268 * 182.87874 * 25 23 11 43 43 H 1.09000 * 109.91273 * 273.87652 * 26 9 7 44 44 H 1.08998 * 109.91258 * 34.96624 * 26 9 7 45 45 H 1.07991 * 125.58423 * 179.72433 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2422 1.1236 -1.0583 6 6 5.5580 1.0248 -0.8510 7 6 6.5416 0.9475 -1.9441 8 8 7.7274 0.8534 -1.6898 9 7 6.1281 0.9811 -3.2265 10 6 6.9764 0.9206 -4.4392 11 6 6.3023 1.9275 -5.3992 12 1 6.6060 2.9468 -5.1602 13 6 6.6262 1.5957 -6.8573 14 7 8.0307 1.9115 -7.1295 15 6 8.5512 1.6964 -8.3777 16 1 7.9267 1.2936 -9.1613 17 6 9.8821 1.9952 -8.6355 18 7 10.6435 2.4857 -7.6804 19 14 10.5921 1.7024 -10.3384 20 1 9.8434 2.5122 -11.3328 21 1 12.0228 2.1001 -10.3532 22 1 10.4744 0.2628 -10.6830 23 6 4.7967 1.7233 -5.1127 24 1 4.3591 1.0495 -5.8493 25 6 4.0647 3.0667 -5.1216 26 6 4.7389 1.0920 -3.7092 27 6 5.9019 0.9967 0.4563 28 16 4.4826 1.1086 1.4026 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 7.9960 1.2312 -4.2113 35 1 6.9651 -0.0820 -4.8669 36 1 6.4512 0.5348 -7.0359 37 1 5.9872 2.1852 -7.5147 38 1 8.5916 2.2737 -6.4258 39 1 11.5733 2.6948 -7.8608 40 1 4.5203 3.7336 -4.3895 41 1 4.1362 3.5130 -6.1135 42 1 3.0161 2.9109 -4.8680 43 1 4.2854 0.1024 -3.7657 44 1 4.1618 1.7268 -3.0369 45 1 6.9082 0.9166 0.8398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107071519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:34 Heat of formation + Delta-G solvation = -13.445686 kcal Electronic energy + Delta-G solvation = -27025.759510 eV Core-core repulsion = 23171.019546 eV Total energy + Delta-G solvation = -3854.739963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79283 -39.31355 -38.26290 -37.58692 -34.58707 -32.74368 -31.94010 -31.32658 -29.18974 -28.57362 -26.72983 -26.36580 -25.89851 -24.27475 -23.01687 -21.51666 -20.72243 -19.83631 -19.72582 -18.46154 -17.09858 -17.00472 -16.47315 -16.29237 -16.15867 -15.83274 -15.36299 -14.92465 -14.42271 -14.31168 -14.06017 -13.83880 -13.42531 -13.23289 -13.14345 -12.93868 -12.81828 -12.68706 -12.43725 -12.23014 -11.96273 -11.89474 -11.71181 -11.20507 -11.05820 -10.79675 -10.53652 -10.41414 -10.31479 -10.27333 -10.16222 -10.00571 -9.95315 -9.83229 -9.59968 -9.30117 -8.82738 -8.46854 -6.87475 -5.70684 -2.99901 0.15790 0.85535 1.25551 1.69507 3.02494 3.17776 3.36051 3.47945 3.51903 3.53396 3.83000 4.35798 4.55702 4.64141 4.76474 4.78551 4.83069 4.86068 4.92527 4.97205 5.01043 5.08418 5.21579 5.38268 5.52983 5.60862 5.64503 5.67760 5.75757 5.94002 6.02714 6.09225 6.16633 6.20959 6.28818 6.31027 6.47285 6.50669 6.59797 6.77855 6.91699 7.10155 7.65773 7.73998 8.19074 8.47596 9.58573 10.16338 10.50856 11.51959 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.002400 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.696104 B =11662.992342 C =12714.700858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.142 3.858 4 C 0.011 3.989 5 N -0.417 5.417 6 C 0.019 3.981 7 C 0.605 3.395 8 O -0.534 6.534 9 N -0.601 5.601 10 C 0.115 3.885 11 C -0.101 4.101 12 H 0.083 0.917 13 C 0.166 3.834 14 N -0.733 5.733 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.103 4.103 24 H 0.085 0.915 25 C -0.138 4.138 26 C 0.108 3.892 27 C -0.221 4.221 28 S 0.232 5.768 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.021 0.979 37 H 0.023 0.977 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.614 -1.686 21.459 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.062 3.938 4 C -0.268 4.268 5 N -0.134 5.134 6 C -0.117 4.117 7 C 0.391 3.609 8 O -0.412 6.412 9 N -0.333 5.333 10 C -0.007 4.007 11 C -0.121 4.121 12 H 0.101 0.899 13 C 0.038 3.962 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.123 4.123 24 H 0.104 0.896 25 C -0.195 4.195 26 C -0.015 4.015 27 C -0.363 4.363 28 S 0.489 5.511 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -23.295 -1.931 22.047 32.132 hybrid contribution 1.116 0.073 -1.516 1.883 sum -22.179 -1.858 20.531 30.281 Atomic orbital electron populations 1.22816 0.79863 1.03408 1.00394 1.87969 1.20383 1.26246 1.95530 1.20758 0.84238 0.86133 1.02643 1.26668 1.00795 1.07155 0.92196 1.67048 1.03235 1.12588 1.30537 1.20428 0.89786 1.07948 0.93511 1.16589 0.86355 0.77446 0.80540 1.90853 1.16016 1.51313 1.82975 1.48588 1.09793 1.70280 1.04620 1.22570 0.95800 0.99858 0.82460 1.22509 0.93352 0.99752 0.96502 0.89890 1.20624 0.87861 0.97253 0.90501 1.42378 1.05877 1.77715 1.11757 1.19165 0.93709 1.35694 0.88593 0.91244 1.24756 0.96576 1.01979 0.97689 1.69658 1.06858 1.49842 1.31697 0.86266 0.78046 0.77820 0.84028 1.21321 1.21727 1.21286 1.22139 0.96229 0.97776 0.96133 0.89645 1.21798 0.99324 0.96177 1.02239 1.22425 0.82786 1.01226 0.95101 1.26703 1.06312 1.06438 0.96823 1.82767 0.94615 1.62902 1.10863 0.89087 0.93446 0.93699 0.89817 0.90766 0.89209 0.90521 0.96083 0.95875 0.78209 0.93454 0.92818 0.92035 0.92841 0.91927 0.88508 0.79024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.13 10.69 -35.23 -0.38 -3.51 16 3 C 0.14 0.96 6.51 36.00 0.23 1.19 16 4 C 0.01 0.10 6.97 -13.61 -0.09 0.01 16 5 N -0.42 -5.08 7.45 -8.51 -0.06 -5.15 16 6 C 0.02 0.26 6.63 -84.53 -0.56 -0.30 16 7 C 0.61 10.34 7.87 -12.59 -0.10 10.24 16 8 O -0.53 -10.76 16.92 5.25 0.09 -10.67 16 9 N -0.60 -9.77 3.29 -171.30 -0.56 -10.33 16 10 C 0.11 2.04 6.44 -2.31 -0.01 2.02 16 11 C -0.10 -1.71 2.60 -88.93 -0.23 -1.94 16 12 H 0.08 1.50 7.86 -51.93 -0.41 1.09 16 13 C 0.17 3.34 5.59 -4.04 -0.02 3.31 16 14 N -0.73 -18.90 5.52 -59.90 -0.33 -19.23 16 15 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 19 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 C -0.10 -1.37 3.17 -89.25 -0.28 -1.65 16 24 H 0.09 1.06 7.85 -51.93 -0.41 0.66 16 25 C -0.14 -1.60 8.90 37.16 0.33 -1.27 16 26 C 0.11 1.44 5.82 -2.98 -0.02 1.43 16 27 C -0.22 -2.42 10.62 29.65 0.31 -2.11 16 28 S 0.23 1.77 22.92 -107.50 -2.46 -0.69 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 1.83 7.85 -51.93 -0.41 1.42 16 35 H 0.08 1.36 7.95 -51.93 -0.41 0.95 16 36 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.24 5.56 -51.93 -0.29 0.95 16 45 H 0.19 1.92 8.03 -52.49 -0.42 1.50 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -35.15 386.66 -8.61 -43.76 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.85 Total: 5.70 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 0.42 Total: 4.68 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.23 Total: -62.94 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.29 Total: -14.18 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.46 Total: -0.69 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.15 -8.61 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107071519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.312 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds