Wall clock time and date at job start Sat Apr 11 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.50694 * 109.47047 * 180.02562 * 3 2 1 5 5 N 1.28648 * 124.72331 * 89.72466 * 4 3 2 6 6 C 1.33565 * 115.76878 * 179.78358 * 5 4 3 7 7 C 1.47258 * 123.14098 * 180.23476 * 6 5 4 8 8 O 1.21634 * 120.00244 * 180.28943 * 7 6 5 9 9 N 1.34778 * 120.00218 * 0.28718 * 7 6 5 10 10 C 1.48120 * 127.03456 * 179.71083 * 9 7 6 11 11 C 1.54594 * 103.42172 * 219.28374 * 10 9 7 12 12 H 1.09003 * 110.57443 * 81.17309 * 11 10 9 13 13 C 1.53006 * 110.98859 * 204.37297 * 11 10 9 14 14 N 1.46506 * 109.46779 * 288.65431 * 13 11 10 15 15 C 1.36936 * 119.99392 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00729 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99536 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99866 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47281 * 59.99622 * 19 17 15 21 21 H 1.48505 * 109.46622 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47232 * 299.99354 * 19 17 15 23 23 C 1.54614 * 102.91316 * 322.86703 * 11 10 9 24 24 H 1.09002 * 110.32547 * 262.80505 * 23 11 10 25 25 C 1.52998 * 110.41519 * 140.63709 * 23 11 10 26 26 C 1.47488 * 127.03359 * 0.02562 * 9 7 6 27 27 C 1.35207 * 113.71394 * 0.49888 * 6 5 4 28 28 S 1.70766 * 124.71837 * 270.02468 * 4 3 2 29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 32 32 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 33 33 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 34 34 H 1.08999 * 110.66237 * 337.76532 * 10 9 7 35 35 H 1.09002 * 110.66340 * 100.88526 * 10 9 7 36 36 H 1.08999 * 109.46807 * 48.64916 * 13 11 10 37 37 H 1.08993 * 109.47157 * 168.65307 * 13 11 10 38 38 H 0.97001 * 119.99884 * 359.97438 * 14 13 11 39 39 H 0.97000 * 119.99371 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.46816 * 302.87206 * 25 23 11 41 41 H 1.08997 * 109.47527 * 62.87080 * 25 23 11 42 42 H 1.09001 * 109.47268 * 182.87874 * 25 23 11 43 43 H 1.09000 * 109.91273 * 273.87652 * 26 9 7 44 44 H 1.08998 * 109.91258 * 34.96624 * 26 9 7 45 45 H 1.07991 * 125.58423 * 179.72433 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2422 1.1236 -1.0583 6 6 5.5580 1.0248 -0.8510 7 6 6.5416 0.9475 -1.9441 8 8 7.7274 0.8534 -1.6898 9 7 6.1281 0.9811 -3.2265 10 6 6.9764 0.9206 -4.4392 11 6 6.3023 1.9275 -5.3992 12 1 6.6060 2.9468 -5.1602 13 6 6.6262 1.5957 -6.8573 14 7 8.0307 1.9115 -7.1295 15 6 8.5512 1.6964 -8.3777 16 1 7.9267 1.2936 -9.1613 17 6 9.8821 1.9952 -8.6355 18 7 10.6435 2.4857 -7.6804 19 14 10.5921 1.7024 -10.3384 20 1 9.8434 2.5122 -11.3328 21 1 12.0228 2.1001 -10.3532 22 1 10.4744 0.2628 -10.6830 23 6 4.7967 1.7233 -5.1127 24 1 4.3591 1.0495 -5.8493 25 6 4.0647 3.0667 -5.1216 26 6 4.7389 1.0920 -3.7092 27 6 5.9019 0.9967 0.4563 28 16 4.4826 1.1086 1.4026 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 7.9960 1.2312 -4.2113 35 1 6.9651 -0.0820 -4.8669 36 1 6.4512 0.5348 -7.0359 37 1 5.9872 2.1852 -7.5147 38 1 8.5916 2.2737 -6.4258 39 1 11.5733 2.6948 -7.8608 40 1 4.5203 3.7336 -4.3895 41 1 4.1362 3.5130 -6.1135 42 1 3.0161 2.9109 -4.8680 43 1 4.2854 0.1024 -3.7657 44 1 4.1618 1.7268 -3.0369 45 1 6.9082 0.9166 0.8398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107071519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:33 Heat of formation + Delta-G solvation = -38.510559 kcal Electronic energy + Delta-G solvation = -27026.846404 eV Core-core repulsion = 23171.019546 eV Total energy + Delta-G solvation = -3855.826858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.83767 -40.38460 -39.11869 -38.57263 -36.46826 -34.21475 -33.06394 -32.68569 -30.81800 -29.18568 -27.96672 -27.26121 -26.82572 -25.70085 -24.56022 -22.78980 -21.79958 -21.13252 -20.68510 -19.60925 -18.97427 -17.61158 -17.52882 -17.27383 -17.04784 -16.65663 -16.57545 -16.31941 -15.86779 -15.51782 -15.22519 -15.00167 -14.89141 -14.82571 -14.34568 -14.05038 -13.76928 -13.65569 -13.43347 -13.21878 -13.13141 -12.98478 -12.82176 -12.71627 -12.48293 -12.32329 -12.19683 -11.96305 -11.78753 -11.59484 -11.51819 -11.32519 -10.93167 -10.82038 -10.77085 -10.61884 -10.11863 -9.73454 -9.00827 -7.94389 -5.24224 -0.64266 0.15252 0.48035 0.73415 1.46364 1.50426 1.56439 1.86027 2.12140 2.55913 2.60850 3.14455 3.38277 3.45697 3.58745 3.71723 3.79981 3.95970 4.13693 4.17476 4.21591 4.25386 4.38013 4.44689 4.50799 4.53507 4.59141 4.62673 4.66714 4.74464 4.79753 4.85546 4.87639 4.96112 5.06145 5.14070 5.18824 5.24664 5.32587 5.48748 5.53762 6.12375 6.26383 6.26644 6.42796 6.91483 7.32497 8.08187 8.30834 9.29195 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.002400 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.696104 B =11662.992342 C =12714.700858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.139 3.861 4 C -0.002 4.002 5 N -0.438 5.438 6 C -0.010 4.010 7 C 0.596 3.404 8 O -0.582 6.582 9 N -0.603 5.603 10 C 0.117 3.883 11 C -0.090 4.090 12 H 0.067 0.933 13 C 0.167 3.833 14 N -0.748 5.748 15 C -0.244 4.244 16 H 0.080 0.920 17 C -0.080 4.080 18 N -0.973 5.973 19 Si 0.977 3.023 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.277 1.277 23 C -0.093 4.093 24 H 0.102 0.898 25 C -0.133 4.133 26 C 0.113 3.887 27 C -0.235 4.235 28 S 0.331 5.669 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.028 0.972 37 H 0.034 0.966 38 H 0.371 0.629 39 H 0.250 0.750 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.160 -1.781 22.292 35.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.060 3.940 4 C -0.281 4.281 5 N -0.155 5.155 6 C -0.146 4.146 7 C 0.384 3.616 8 O -0.463 6.463 9 N -0.334 5.334 10 C -0.006 4.006 11 C -0.110 4.110 12 H 0.085 0.915 13 C 0.040 3.960 14 N -0.390 5.390 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.272 4.272 18 N -0.624 5.624 19 Si 0.806 3.194 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.203 1.203 23 C -0.112 4.112 24 H 0.120 0.880 25 C -0.190 4.190 26 C -0.008 4.008 27 C -0.378 4.378 28 S 0.589 5.411 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.202 0.798 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -26.944 -2.037 22.875 35.403 hybrid contribution 2.092 0.069 -1.620 2.647 sum -24.852 -1.968 21.256 32.761 Atomic orbital electron populations 1.22989 0.78179 1.04095 1.01670 1.87915 1.22266 1.27073 1.95813 1.20992 0.82300 0.86079 1.04629 1.27273 1.02307 1.05802 0.92691 1.66975 1.02434 1.13971 1.32166 1.19997 0.90184 1.11348 0.93033 1.17209 0.86630 0.76406 0.81379 1.90804 1.18151 1.53540 1.83780 1.48681 1.10669 1.69921 1.04121 1.22356 0.94533 0.99828 0.83834 1.22318 0.96229 0.98311 0.94140 0.91457 1.20774 0.85055 0.97498 0.92644 1.42631 1.07995 1.77667 1.10744 1.19633 0.94022 1.34253 0.89668 0.90201 1.25651 0.97216 1.02697 1.01661 1.69844 1.06801 1.51790 1.33918 0.85158 0.76705 0.78064 0.79513 1.20049 1.22404 1.20302 1.22149 0.93327 0.99350 0.96384 0.87989 1.21771 1.00662 0.94643 1.01973 1.22551 0.81195 1.02000 0.95102 1.26975 1.08443 1.05366 0.97009 1.82409 0.90911 1.59958 1.07814 0.88805 0.92776 0.91797 0.89149 0.87484 0.92951 0.90779 0.95424 0.94804 0.79767 0.94103 0.93634 0.92230 0.89946 0.91049 0.87333 0.78953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.41 16 2 O -0.41 -5.59 10.69 -148.98 -1.59 -7.18 16 3 C 0.14 1.42 6.51 71.23 0.46 1.88 16 4 C 0.00 -0.03 6.97 88.57 0.62 0.58 16 5 N -0.44 -10.14 7.45 -180.85 -1.35 -11.49 16 6 C -0.01 -0.28 6.63 40.55 0.27 -0.01 16 7 C 0.60 21.44 7.87 86.61 0.68 22.12 16 8 O -0.58 -25.24 16.92 -4.14 -0.07 -25.31 16 9 N -0.60 -20.33 3.29 -814.12 -2.68 -23.01 16 10 C 0.12 4.41 6.44 86.61 0.56 4.97 16 11 C -0.09 -3.10 2.60 -9.70 -0.03 -3.13 16 12 H 0.07 2.53 7.86 -2.39 -0.02 2.51 16 13 C 0.17 6.73 5.59 86.38 0.48 7.21 16 14 N -0.75 -39.57 5.52 -343.44 -1.90 -41.47 16 15 C -0.24 -14.02 9.99 84.04 0.84 -13.18 16 16 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 17 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 18 N -0.97 -62.35 13.06 21.65 0.28 -62.07 16 19 Si 0.98 47.52 29.55 68.60 2.03 49.55 16 20 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 C -0.09 -2.32 3.17 -9.91 -0.03 -2.35 16 24 H 0.10 2.28 7.85 -2.39 -0.02 2.26 16 25 C -0.13 -2.80 8.90 71.98 0.64 -2.16 16 26 C 0.11 2.93 5.82 86.53 0.50 3.44 16 27 C -0.23 -5.03 10.62 67.12 0.71 -4.32 16 28 S 0.33 4.14 22.92 -56.49 -1.29 2.84 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.05 2.34 7.85 -2.39 -0.02 2.32 16 35 H 0.07 2.78 7.95 -2.39 -0.02 2.76 16 36 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.37 21.36 7.67 -92.71 -0.71 20.65 16 39 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.11 2.62 5.56 -2.39 -0.01 2.60 16 45 H 0.19 3.93 8.03 -2.92 -0.02 3.91 16 Total: -1.00 -79.53 386.66 1.15 -78.38 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.29 Total: 27.60 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 7.43 Total: 12.15 kcal Atomic # 7 Polarization: -132.39 SS G_CDS: -5.64 Total: -138.04 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.66 Total: -32.48 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.29 Total: 2.84 kcal Total: -79.53 1.15 -78.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107071519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.868 kcal (2) G-P(sol) polarization free energy of solvation -79.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds