Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.51375 * 2 1 4 4 C 1.53277 * 109.51518 * 239.89878 * 2 1 3 5 5 N 1.47163 * 108.55407 * 187.12902 * 4 2 1 6 6 C 1.34772 * 121.06714 * 231.15249 * 5 4 2 7 7 O 1.21277 * 120.00337 * 179.97438 * 6 5 4 8 8 C 1.50705 * 120.00082 * 359.97438 * 6 5 4 9 9 S 1.81400 * 109.47111 * 180.02562 * 8 6 5 10 10 C 1.81399 * 102.99745 * 180.02562 * 9 8 6 11 11 C 1.47198 * 109.47343 * 179.97438 * 10 9 8 12 12 N 9.15805 * 118.35236 * 283.62410 * 2 1 3 13 13 C 1.47306 * 117.86652 * 51.12854 * 5 4 2 14 14 C 1.52516 * 108.39812 * 310.60794 * 13 5 4 15 15 C 1.54511 * 110.04345 * 287.91828 * 14 13 5 16 16 C 1.55282 * 101.41930 * 206.72107 * 15 14 13 17 17 N 1.47476 * 104.76877 * 36.70321 * 16 15 14 18 18 C 1.36945 * 125.66021 * 155.88129 * 17 16 15 19 19 H 1.07997 * 119.99756 * 179.69400 * 18 17 16 20 20 C 1.38805 * 119.99878 * 359.69305 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47191 * 108.67988 * 335.61814 * 17 16 15 27 27 O 1.42065 * 111.11706 * 50.43200 * 14 13 5 28 28 H 1.09001 * 109.47091 * 180.10270 * 1 2 3 29 29 H 1.09003 * 109.47060 * 300.10491 * 1 2 3 30 30 H 1.08998 * 109.46913 * 60.10145 * 1 2 3 31 31 H 1.09004 * 109.62452 * 67.40931 * 4 2 1 32 32 H 1.09000 * 109.77397 * 306.94113 * 4 2 1 33 33 H 1.09000 * 109.47199 * 300.00499 * 8 6 5 34 34 H 1.09006 * 109.46762 * 60.00068 * 8 6 5 35 35 H 1.08997 * 109.47233 * 300.00233 * 10 9 8 36 36 H 1.08997 * 109.47221 * 59.99974 * 10 9 8 37 37 H 1.09003 * 109.68053 * 190.87871 * 13 5 4 38 38 H 1.08997 * 109.70928 * 70.35641 * 13 5 4 39 39 H 1.09001 * 111.01806 * 324.97409 * 15 14 13 40 40 H 1.09002 * 111.01310 * 88.82054 * 15 14 13 41 41 H 1.09003 * 110.50306 * 277.84429 * 16 15 14 42 42 H 1.09001 * 110.32549 * 155.47679 * 16 15 14 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.90927 * 121.13301 * 26 17 16 45 45 H 1.08996 * 109.90911 * 242.21304 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7246 -1.2499 5 7 3.5033 -0.8638 -1.1448 6 6 4.3128 -0.4771 -2.1505 7 8 5.5146 -0.6002 -2.0432 8 6 3.7248 0.1082 -3.4086 9 16 5.0604 0.5254 -4.5631 10 6 4.1693 1.2044 -5.9897 11 6 5.1343 1.5963 -7.0299 12 7 5.8791 1.8984 -7.8327 13 6 4.0527 -1.4388 0.0951 14 6 3.4244 -0.7147 1.2812 15 6 3.9930 0.7179 1.3888 16 6 3.8287 1.0008 2.9068 17 7 4.1123 -0.2894 3.5624 18 6 4.5434 -0.4518 4.8521 19 1 4.7188 -1.4435 5.2419 20 6 4.7550 0.6583 5.6581 21 7 4.5408 1.8670 5.1831 22 14 5.3423 0.4368 7.4175 23 1 5.4908 1.7668 8.0610 24 1 4.3509 -0.3710 8.1723 25 1 6.6529 -0.2616 7.4176 26 6 3.8491 -1.3739 2.6027 27 8 2.0089 -0.6768 1.1664 28 1 -0.3633 -1.0277 0.0018 29 1 -0.3633 0.5155 0.8891 30 1 -0.3633 0.5123 -0.8909 31 1 1.7926 -0.1436 -2.1378 32 1 1.5842 -1.7114 -1.3176 33 1 3.0591 -0.6201 -3.8716 34 1 3.1626 1.0090 -3.1619 35 1 3.4919 0.4491 -6.3881 36 1 3.5966 2.0780 -5.6783 37 1 5.1343 -1.3046 0.1141 38 1 3.8139 -2.5011 0.1450 39 1 5.0419 0.7455 1.0934 40 1 3.4037 1.4178 0.7963 41 1 2.8108 1.3225 3.1272 42 1 4.5444 1.7563 3.2308 43 1 4.6883 2.6427 5.7465 44 1 4.7539 -1.9622 2.4501 45 1 3.0491 -2.0134 2.9756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131639747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -0.864001 kcal Electronic energy + Delta-G solvation = -27704.836510 eV Core-core repulsion = 23850.642130 eV Total energy + Delta-G solvation = -3854.194381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75956 -38.88554 -37.08699 -36.44951 -34.80543 -33.23648 -31.41878 -31.16281 -30.52920 -29.16415 -28.30252 -26.66298 -25.47723 -23.66975 -22.06717 -20.34797 -20.05429 -19.18110 -18.51718 -17.50589 -17.09678 -16.87653 -16.48279 -16.17003 -15.80704 -15.42880 -14.87979 -14.79908 -14.58995 -14.25948 -14.18537 -13.85449 -13.45172 -13.29002 -13.15233 -12.82954 -12.66867 -12.50354 -12.44928 -12.44382 -12.32481 -12.07000 -11.72333 -11.62278 -11.09890 -10.96579 -10.86634 -10.57962 -10.49002 -10.39002 -10.13714 -10.07891 -9.94068 -9.64914 -9.55929 -8.65469 -8.51386 -8.17069 -6.84641 -5.64708 -3.06894 0.52791 1.77513 2.25357 2.32089 2.59459 2.72690 3.28799 3.41831 3.45628 3.47094 3.72422 4.02815 4.40332 4.46391 4.47542 4.53381 4.59441 4.62812 4.73634 4.92988 5.01269 5.07144 5.22544 5.36881 5.42376 5.46526 5.51521 5.66532 5.78237 5.83448 5.87885 6.04454 6.13918 6.23644 6.46665 6.48572 6.55507 6.64082 6.99279 7.09214 7.50320 7.56250 7.62269 7.84741 7.86048 8.35041 9.21443 9.81847 10.46179 11.39095 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.002595 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.373803 B =10787.983151 C =11598.045217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 H 0.068 0.932 4 C 0.077 3.923 5 N -0.606 5.606 6 C 0.533 3.467 7 O -0.515 6.515 8 C -0.132 4.132 9 S -0.131 6.131 10 C -0.026 4.026 11 C 0.221 3.779 12 N -0.406 5.406 13 C 0.100 3.900 14 C 0.096 3.904 15 C -0.165 4.165 16 C 0.160 3.840 17 N -0.601 5.601 18 C -0.222 4.222 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.290 1.290 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.154 3.846 27 O -0.351 6.351 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.014 0.986 42 H 0.107 0.893 43 H 0.253 0.747 44 H 0.040 0.960 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 -3.285 -20.386 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 H 0.086 0.914 4 C -0.047 4.047 5 N -0.340 5.340 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.283 4.283 9 S 0.094 5.906 10 C -0.177 4.177 11 C -0.098 4.098 12 N -0.084 5.084 13 C -0.022 4.022 14 C 0.055 3.945 15 C -0.204 4.204 16 C 0.035 3.965 17 N -0.328 5.328 18 C -0.350 4.350 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.747 3.253 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.211 1.211 26 C 0.027 3.973 27 O -0.270 6.270 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.124 0.876 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.695 -2.979 -21.078 22.636 hybrid contribution -1.500 0.050 0.879 1.739 sum -9.195 -2.929 -20.199 22.386 Atomic orbital electron populations 1.21704 0.92370 1.03071 1.02810 1.22454 0.95327 0.96194 0.85127 0.91404 1.22578 0.80026 1.02227 0.99822 1.48065 1.06695 1.62589 1.16673 1.19465 0.86759 0.78418 0.83492 1.90788 1.14014 1.54173 1.80033 1.23630 1.01517 1.05826 0.97365 1.88186 1.09918 1.81374 1.11166 1.20820 0.96770 1.06272 0.93811 1.27725 0.94192 0.93960 0.93876 1.81288 1.08278 1.08313 1.10540 1.22257 1.00872 0.97253 0.81851 1.22296 0.80605 0.96878 0.94705 1.23557 1.00229 0.94746 1.01878 1.21951 0.99854 0.90145 0.84529 1.44495 1.78191 1.00414 1.09676 1.19020 1.36823 0.93073 0.86098 0.90403 1.24788 1.01948 0.95230 0.98674 1.69783 1.55129 0.97038 1.35155 0.86126 0.78597 0.76623 0.83990 1.21598 1.21201 1.21114 1.21050 0.97355 0.92046 0.86811 1.87931 1.20597 1.76601 1.41837 0.91674 0.91043 0.91219 0.89332 0.90120 0.86540 0.86456 0.85440 0.85367 0.87666 0.90733 0.91227 0.92220 0.96786 0.87578 0.93677 0.94260 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.57 37.16 0.36 -0.85 16 2 C 0.07 0.75 3.17 -26.59 -0.08 0.67 16 3 H 0.07 0.81 6.13 -51.93 -0.32 0.49 16 4 C 0.08 0.63 5.81 -3.54 -0.02 0.61 16 5 N -0.61 -6.94 2.91 -172.63 -0.50 -7.44 16 6 C 0.53 6.25 7.73 -10.98 -0.08 6.16 16 7 O -0.51 -8.35 15.35 5.56 0.09 -8.26 16 8 C -0.13 -0.86 4.80 36.01 0.17 -0.69 16 9 S -0.13 -1.11 20.83 -107.50 -2.24 -3.35 16 10 C -0.03 -0.10 6.42 34.37 0.22 0.12 16 11 C 0.22 1.76 15.44 -20.76 -0.32 1.44 16 12 N -0.41 -4.58 18.54 42.15 0.78 -3.80 16 13 C 0.10 1.43 5.17 -3.85 -0.02 1.41 16 14 C 0.10 1.63 0.83 -89.73 -0.07 1.56 16 15 C -0.17 -3.14 5.92 -24.73 -0.15 -3.29 16 16 C 0.16 3.90 5.91 -2.30 -0.01 3.88 16 17 N -0.60 -15.39 3.40 -170.07 -0.58 -15.97 16 18 C -0.22 -6.17 10.28 -15.06 -0.15 -6.33 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 22 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.15 3.18 6.61 -3.32 -0.02 3.16 16 27 O -0.35 -5.63 9.87 -35.23 -0.35 -5.98 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.40 6.05 -51.93 -0.31 0.08 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.12 0.40 8.01 -51.92 -0.42 -0.02 16 34 H 0.12 0.48 7.67 -51.92 -0.40 0.09 16 35 H 0.13 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.11 1.70 6.89 -51.93 -0.36 1.34 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.38 7.86 -51.93 -0.41 0.97 16 40 H 0.06 1.02 5.98 -51.93 -0.31 0.71 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 2.92 5.86 -51.93 -0.30 2.62 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.04 0.78 7.79 -51.93 -0.40 0.38 16 45 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -35.95 376.60 -8.46 -44.41 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.58 Total: -3.45 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.29 Total: 7.46 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.26 Total: -53.55 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.26 Total: -14.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.24 Total: -3.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.95 -8.46 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131639747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.544 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds