Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 117.00131 * 2 1 4 4 C 1.37567 * 120.83038 * 179.97438 * 3 2 1 5 5 C 1.38034 * 114.25826 * 179.97438 * 4 3 2 6 6 C 1.47112 * 127.76551 * 180.02562 * 5 4 3 7 7 O 1.21635 * 119.99649 * 26.18389 * 6 5 4 8 8 N 1.34773 * 120.00371 * 206.18068 * 6 5 4 9 9 C 1.46930 * 120.62753 * 6.07518 * 8 6 5 10 10 C 1.53622 * 108.54164 * 126.37017 * 9 8 6 11 11 C 1.53045 * 109.24133 * 54.85458 * 10 9 8 12 12 H 1.08995 * 109.45757 * 58.53391 * 11 10 9 13 13 C 1.53005 * 109.44734 * 178.49743 * 11 10 9 14 14 C 1.53043 * 109.53744 * 298.51166 * 11 10 9 15 15 H 1.09001 * 109.49850 * 301.41361 * 14 11 10 16 16 C 1.53002 * 109.51922 * 181.33452 * 14 11 10 17 17 N 1.46502 * 109.46520 * 175.14562 * 16 14 11 18 18 C 1.36946 * 119.99871 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99480 * 359.97438 * 18 17 16 20 20 C 1.38804 * 120.00005 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00105 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47004 * 59.99691 * 22 20 18 24 24 H 1.48500 * 109.47391 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47040 * 299.99886 * 22 20 18 26 26 C 1.46924 * 120.63207 * 186.35982 * 8 6 5 27 27 S 1.77237 * 104.47798 * 0.02562 * 5 4 3 28 28 N 1.30368 * 120.82809 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47323 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46753 * 299.99975 * 1 2 3 31 31 H 1.09001 * 109.46961 * 59.99596 * 1 2 3 32 32 H 1.08003 * 122.86653 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.58433 * 246.20148 * 9 8 6 34 34 H 1.08995 * 109.58565 * 6.63158 * 9 8 6 35 35 H 1.09006 * 109.63588 * 294.86742 * 10 9 8 36 36 H 1.08998 * 109.46112 * 174.74146 * 10 9 8 37 37 H 1.08996 * 109.46763 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.47096 * 300.06194 * 13 11 10 39 39 H 1.09003 * 109.46661 * 60.06532 * 13 11 10 40 40 H 1.08998 * 109.47055 * 295.14397 * 16 14 11 41 41 H 1.08993 * 109.47310 * 55.14714 * 16 14 11 42 42 H 0.96991 * 120.00498 * 0.02562 * 17 16 14 43 43 H 0.97007 * 119.99736 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58319 * 353.36877 * 26 8 6 45 45 H 1.08993 * 109.59060 * 113.79928 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 0.0005 5 6 3.9007 2.5968 -0.0001 6 6 5.3050 3.0351 -0.0003 7 8 6.1672 2.3137 -0.4648 8 7 5.6362 4.2360 0.5140 9 6 4.6304 5.0610 1.1971 10 6 5.1652 5.4307 2.5889 11 6 6.5330 6.1013 2.4419 12 1 6.4370 6.9885 1.8161 13 6 7.0534 6.5054 3.8228 14 6 7.5153 5.1235 1.7929 15 1 7.5929 4.2253 2.4057 16 6 8.8911 5.7827 1.6765 17 7 9.8573 4.8086 1.1628 18 6 11.1634 5.1742 0.9734 19 1 11.4810 6.1807 1.2024 20 6 12.0788 4.2514 0.4863 21 7 11.6915 3.0249 0.2067 22 14 13.8602 4.7503 0.2273 23 1 14.4449 5.1873 1.5206 24 1 14.6277 3.5918 -0.2961 25 1 13.9244 5.8684 -0.7478 26 6 7.0085 4.7478 0.3970 27 16 2.4472 3.6110 -0.0006 28 7 1.3522 2.3149 -0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 4.0643 0.4372 0.0006 33 1 4.4482 5.9675 0.6199 34 1 3.7031 4.4972 1.2984 35 1 5.2650 4.5297 3.1942 36 1 4.4726 6.1192 3.0730 37 1 8.0273 6.9834 3.7184 38 1 6.3538 7.2018 4.2852 39 1 7.1499 5.6181 4.4486 40 1 8.8313 6.6300 0.9935 41 1 9.2121 6.1296 2.6586 42 1 9.5718 3.9050 0.9561 43 1 12.3314 2.3800 -0.1334 44 1 7.6506 3.9774 -0.0298 45 1 7.0163 5.6293 -0.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132831187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -8.436752 kcal Electronic energy + Delta-G solvation = -27343.559907 eV Core-core repulsion = 23489.037147 eV Total energy + Delta-G solvation = -3854.522760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60246 -40.16687 -38.11491 -36.65587 -35.09542 -33.78498 -32.08619 -31.49420 -29.85020 -28.69945 -28.06823 -26.09959 -24.78828 -23.40307 -23.18211 -21.57668 -21.26996 -19.83821 -19.34032 -18.59313 -17.93290 -17.03875 -16.63040 -16.35582 -16.16589 -15.39429 -15.00619 -14.86797 -14.66372 -14.24739 -14.00017 -13.78221 -13.70491 -13.58693 -13.24731 -13.05655 -12.71449 -12.55963 -12.38239 -11.98216 -11.83122 -11.72147 -11.67232 -11.40416 -11.06579 -11.01443 -10.84579 -10.80698 -10.63407 -10.36328 -10.21427 -10.13124 -9.97018 -9.86445 -9.58730 -8.84253 -8.65729 -8.58551 -6.87012 -5.69943 -2.99853 -0.10261 0.81644 1.23486 1.97211 2.49975 2.89446 3.04423 3.47499 3.51605 3.53270 4.12947 4.49202 4.58952 4.63415 4.74205 4.79796 4.84360 4.88528 4.96285 5.07334 5.17630 5.18995 5.25994 5.40870 5.57246 5.60693 5.64716 5.66732 5.74575 5.80003 5.86939 5.90374 5.99684 6.11684 6.19703 6.29815 6.41334 6.48711 6.53133 6.69531 6.79425 6.87484 7.23580 7.73764 7.95966 8.47786 9.58716 10.16447 10.50398 11.52193 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.002742 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.523242 B =10210.106507 C =11551.711716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.295 6.295 3 C 0.309 3.691 4 C -0.132 4.132 5 C -0.173 4.173 6 C 0.586 3.414 7 O -0.500 6.500 8 N -0.599 5.599 9 C 0.092 3.908 10 C -0.125 4.125 11 C -0.085 4.085 12 H 0.073 0.927 13 C -0.148 4.148 14 C -0.102 4.102 15 H 0.076 0.924 16 C 0.159 3.841 17 N -0.733 5.733 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.121 3.879 27 S 0.295 5.705 28 N -0.528 5.528 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.178 0.822 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.028 0.972 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.108 0.892 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.372 2.026 3.252 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.096 3.904 4 C -0.169 4.169 5 C -0.305 4.305 6 C 0.370 3.630 7 O -0.374 6.374 8 N -0.333 5.333 9 C -0.033 4.033 10 C -0.163 4.163 11 C -0.104 4.104 12 H 0.092 0.908 13 C -0.205 4.205 14 C -0.122 4.122 15 H 0.095 0.905 16 C 0.031 3.969 17 N -0.378 5.378 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.000 4.000 27 S 0.445 5.555 28 N -0.368 5.368 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.196 0.804 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.126 0.874 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.135 3.014 2.960 26.474 hybrid contribution 1.535 -1.454 -0.209 2.125 sum -24.600 1.559 2.752 24.802 Atomic orbital electron populations 1.22984 0.76678 1.03648 1.02537 1.86321 1.23018 1.22649 1.88097 1.19879 0.89719 0.85290 0.95558 1.20795 0.92478 0.98640 1.04983 1.26094 0.99511 0.97615 1.07246 1.16744 0.84951 0.81788 0.79472 1.90945 1.48390 1.52659 1.45451 1.48021 1.12212 1.17434 1.55608 1.22287 0.90866 0.95712 0.94394 1.22034 0.97398 1.01435 0.95467 1.21111 0.93684 0.98159 0.97452 0.90844 1.21878 1.01481 1.01226 0.95922 1.21736 0.95762 0.99146 0.95561 0.90535 1.20718 0.86700 0.92532 0.96954 1.42413 1.05881 1.11192 1.78310 1.19140 0.85462 0.96237 1.36525 0.91305 1.24753 0.98131 0.95872 1.02110 1.69663 1.34056 1.03513 1.50516 0.86291 0.85130 0.77073 0.77799 1.21348 1.21724 1.21308 1.21874 0.79847 1.00585 0.97650 1.85052 0.89346 1.11778 1.69352 1.76387 1.27718 1.01701 1.30979 0.87962 0.92105 0.92124 0.80427 0.90218 0.90166 0.91212 0.90428 0.91521 0.93142 0.92724 0.96324 0.95416 0.78102 0.93421 0.87368 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.43 101.05 1.05 1.31 16 2 O -0.30 -3.08 10.51 -19.60 -0.21 -3.28 16 3 C 0.31 3.53 7.36 -18.42 -0.14 3.40 16 4 C -0.13 -1.57 10.18 -39.90 -0.41 -1.98 16 5 C -0.17 -2.14 6.08 -36.06 -0.22 -2.36 16 6 C 0.59 8.93 7.65 -12.66 -0.10 8.83 16 7 O -0.50 -9.79 16.45 5.25 0.09 -9.70 16 8 N -0.60 -8.09 2.97 -173.89 -0.52 -8.60 16 9 C 0.09 0.89 5.70 -3.48 -0.02 0.87 16 10 C -0.12 -1.17 5.38 -26.38 -0.14 -1.32 16 11 C -0.08 -0.97 2.23 -90.57 -0.20 -1.17 16 12 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 13 C -0.15 -1.63 8.82 37.16 0.33 -1.30 16 14 C -0.10 -1.58 1.92 -90.50 -0.17 -1.75 16 15 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 17 N -0.73 -18.46 5.38 -59.91 -0.32 -18.78 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 22 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.12 1.92 5.53 -3.71 -0.02 1.90 16 27 S 0.29 2.92 20.21 -107.50 -2.17 0.75 16 28 N -0.53 -5.94 11.03 29.19 0.32 -5.62 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.13 -51.92 -0.42 0.00 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 32 H 0.18 2.02 8.06 -52.48 -0.42 1.59 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.71 3.78 -25.14 -0.10 0.61 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.81 6.30 -51.93 -0.33 0.48 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 42 H 0.38 10.41 6.89 -40.82 -0.28 10.12 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.11 2.16 6.20 -51.93 -0.32 1.84 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -33.52 373.83 -8.16 -41.68 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.38 Total: 6.21 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.30 Total: 2.07 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.21 Total: -60.99 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.12 Total: -12.98 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.17 Total: 0.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.52 -8.16 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132831187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.243 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds