Wall clock time and date at job start Sat Apr 11 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 117.00131 * 2 1 4 4 C 1.37567 * 120.83038 * 179.97438 * 3 2 1 5 5 C 1.38034 * 114.25826 * 179.97438 * 4 3 2 6 6 C 1.47112 * 127.76551 * 180.02562 * 5 4 3 7 7 O 1.21635 * 119.99649 * 26.18389 * 6 5 4 8 8 N 1.34773 * 120.00371 * 206.18068 * 6 5 4 9 9 C 1.46930 * 120.62753 * 6.07518 * 8 6 5 10 10 C 1.53622 * 108.54164 * 126.37017 * 9 8 6 11 11 C 1.53045 * 109.24133 * 54.85458 * 10 9 8 12 12 H 1.08995 * 109.45757 * 58.53391 * 11 10 9 13 13 C 1.53005 * 109.44734 * 178.49743 * 11 10 9 14 14 C 1.53043 * 109.53744 * 298.51166 * 11 10 9 15 15 H 1.09001 * 109.49850 * 301.41361 * 14 11 10 16 16 C 1.53002 * 109.51922 * 181.33452 * 14 11 10 17 17 N 1.46502 * 109.46520 * 175.14562 * 16 14 11 18 18 C 1.36946 * 119.99871 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99480 * 359.97438 * 18 17 16 20 20 C 1.38804 * 120.00005 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00105 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47004 * 59.99691 * 22 20 18 24 24 H 1.48500 * 109.47391 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47040 * 299.99886 * 22 20 18 26 26 C 1.46924 * 120.63207 * 186.35982 * 8 6 5 27 27 S 1.77237 * 104.47798 * 0.02562 * 5 4 3 28 28 N 1.30368 * 120.82809 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47323 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46753 * 299.99975 * 1 2 3 31 31 H 1.09001 * 109.46961 * 59.99596 * 1 2 3 32 32 H 1.08003 * 122.86653 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.58433 * 246.20148 * 9 8 6 34 34 H 1.08995 * 109.58565 * 6.63158 * 9 8 6 35 35 H 1.09006 * 109.63588 * 294.86742 * 10 9 8 36 36 H 1.08998 * 109.46112 * 174.74146 * 10 9 8 37 37 H 1.08996 * 109.46763 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.47096 * 300.06194 * 13 11 10 39 39 H 1.09003 * 109.46661 * 60.06532 * 13 11 10 40 40 H 1.08998 * 109.47055 * 295.14397 * 16 14 11 41 41 H 1.08993 * 109.47310 * 55.14714 * 16 14 11 42 42 H 0.96991 * 120.00498 * 0.02562 * 17 16 14 43 43 H 0.97007 * 119.99736 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58319 * 353.36877 * 26 8 6 45 45 H 1.08993 * 109.59060 * 113.79928 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 0.0005 5 6 3.9007 2.5968 -0.0001 6 6 5.3050 3.0351 -0.0003 7 8 6.1672 2.3137 -0.4648 8 7 5.6362 4.2360 0.5140 9 6 4.6304 5.0610 1.1971 10 6 5.1652 5.4307 2.5889 11 6 6.5330 6.1013 2.4419 12 1 6.4370 6.9885 1.8161 13 6 7.0534 6.5054 3.8228 14 6 7.5153 5.1235 1.7929 15 1 7.5929 4.2253 2.4057 16 6 8.8911 5.7827 1.6765 17 7 9.8573 4.8086 1.1628 18 6 11.1634 5.1742 0.9734 19 1 11.4810 6.1807 1.2024 20 6 12.0788 4.2514 0.4863 21 7 11.6915 3.0249 0.2067 22 14 13.8602 4.7503 0.2273 23 1 14.4449 5.1873 1.5206 24 1 14.6277 3.5918 -0.2961 25 1 13.9244 5.8684 -0.7478 26 6 7.0085 4.7478 0.3970 27 16 2.4472 3.6110 -0.0006 28 7 1.3522 2.3149 -0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 4.0643 0.4372 0.0006 33 1 4.4482 5.9675 0.6199 34 1 3.7031 4.4972 1.2984 35 1 5.2650 4.5297 3.1942 36 1 4.4726 6.1192 3.0730 37 1 8.0273 6.9834 3.7184 38 1 6.3538 7.2018 4.2852 39 1 7.1499 5.6181 4.4486 40 1 8.8313 6.6300 0.9935 41 1 9.2121 6.1296 2.6586 42 1 9.5718 3.9050 0.9561 43 1 12.3314 2.3800 -0.1334 44 1 7.6506 3.9774 -0.0298 45 1 7.0163 5.6293 -0.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132831187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:55 Heat of formation + Delta-G solvation = -33.137728 kcal Electronic energy + Delta-G solvation = -27344.631022 eV Core-core repulsion = 23489.037147 eV Total energy + Delta-G solvation = -3855.593874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.63108 -41.10232 -39.29692 -37.51803 -36.67447 -35.19463 -33.55879 -32.64025 -31.41494 -29.60288 -28.88557 -27.56159 -25.92952 -24.93795 -24.28159 -22.62441 -22.52749 -21.01414 -20.31740 -19.57689 -19.08350 -18.74639 -17.55557 -17.28267 -17.23200 -16.73023 -16.51262 -15.80216 -15.73442 -15.55847 -15.27362 -15.19981 -14.75842 -14.61354 -14.40241 -14.33410 -14.03642 -13.98650 -13.17740 -13.03928 -12.99386 -12.75152 -12.68016 -12.67887 -12.56147 -12.22753 -12.17645 -12.05666 -11.92278 -11.87297 -11.74324 -11.48020 -11.21671 -11.06907 -10.91604 -10.88882 -9.81023 -9.37839 -8.96563 -7.91856 -5.21730 -1.06094 -0.08059 0.38612 1.03968 1.46725 1.47986 1.50690 1.56792 1.79994 2.18619 2.57476 3.16926 3.41052 3.59096 3.69177 3.75325 3.84114 3.97099 4.05010 4.20259 4.22600 4.29712 4.35734 4.36512 4.48851 4.50649 4.58763 4.70995 4.73514 4.77706 4.82070 4.92632 4.97386 4.98332 5.08008 5.14987 5.26356 5.27271 5.36163 5.50504 5.51008 5.60587 5.93464 6.12587 6.28843 6.80267 7.34485 8.12142 8.33203 9.31368 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.002742 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.523242 B =10210.106507 C =11551.711716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.306 3.694 4 C -0.136 4.136 5 C -0.194 4.194 6 C 0.583 3.417 7 O -0.560 6.560 8 N -0.593 5.593 9 C 0.086 3.914 10 C -0.119 4.119 11 C -0.078 4.078 12 H 0.092 0.908 13 C -0.146 4.146 14 C -0.090 4.090 15 H 0.051 0.949 16 C 0.157 3.843 17 N -0.749 5.749 18 C -0.243 4.243 19 H 0.080 0.920 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.975 3.025 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.276 1.276 26 C 0.128 3.872 27 S 0.362 5.638 28 N -0.536 5.536 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.173 0.827 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.028 0.972 41 H 0.034 0.966 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.057 0.943 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.903 4.659 4.224 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.213 6.213 3 C 0.093 3.907 4 C -0.174 4.174 5 C -0.325 4.325 6 C 0.369 3.631 7 O -0.439 6.439 8 N -0.325 5.325 9 C -0.037 4.037 10 C -0.158 4.158 11 C -0.097 4.097 12 H 0.110 0.890 13 C -0.203 4.203 14 C -0.110 4.110 15 H 0.069 0.931 16 C 0.031 3.969 17 N -0.391 5.391 18 C -0.375 4.375 19 H 0.098 0.902 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.804 3.196 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.202 1.202 26 C 0.006 3.994 27 S 0.513 5.487 28 N -0.377 5.377 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.191 0.809 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -28.726 5.731 3.977 29.561 hybrid contribution 2.192 -2.202 -0.470 3.142 sum -26.534 3.529 3.506 26.996 Atomic orbital electron populations 1.23251 0.74896 1.05547 1.02652 1.86318 1.24812 1.22242 1.87908 1.19751 0.89401 0.85729 0.95819 1.20853 0.93030 0.98613 1.04877 1.25759 0.99070 0.98881 1.08830 1.17127 0.85705 0.81654 0.78617 1.90912 1.50395 1.54435 1.48179 1.48071 1.12015 1.17324 1.55098 1.22668 0.90000 0.96287 0.94769 1.22044 0.96771 1.01748 0.95187 1.21107 0.93455 0.97572 0.97579 0.88956 1.21856 1.01516 1.01353 0.95564 1.21590 0.95042 0.99077 0.95247 0.93087 1.20925 0.87528 0.91750 0.96735 1.42686 1.06265 1.11647 1.78520 1.19622 0.86703 0.96449 1.34693 0.90244 1.25634 1.02603 0.95972 1.03012 1.69860 1.35156 1.04776 1.52497 0.85190 0.79843 0.76519 0.78081 1.20189 1.22544 1.20167 1.21583 0.80671 0.99324 0.97866 1.84704 0.86494 1.09836 1.67669 1.76308 1.28354 1.02171 1.30858 0.85301 0.91819 0.92069 0.80946 0.87185 0.89058 0.92303 0.86375 0.93036 0.90081 0.93731 0.95428 0.94794 0.79813 0.94199 0.92393 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.43 113.37 1.18 1.57 16 2 O -0.31 -6.13 10.51 -93.06 -0.98 -7.11 16 3 C 0.31 6.72 7.36 84.75 0.62 7.35 16 4 C -0.14 -3.28 10.18 22.06 0.22 -3.06 16 5 C -0.19 -4.76 6.08 24.55 0.15 -4.61 16 6 C 0.58 18.45 7.65 86.57 0.66 19.11 16 7 O -0.56 -23.82 16.45 -4.14 -0.07 -23.89 16 8 N -0.59 -15.88 2.97 -822.32 -2.44 -18.32 16 9 C 0.09 1.40 5.70 86.51 0.49 1.89 16 10 C -0.12 -1.82 5.38 30.82 0.17 -1.65 16 11 C -0.08 -1.57 2.23 -10.76 -0.02 -1.59 16 12 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 13 C -0.15 -2.82 8.82 71.98 0.63 -2.18 16 14 C -0.09 -2.78 1.92 -10.71 -0.02 -2.80 16 15 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 16 C 0.16 6.05 5.41 86.38 0.47 6.52 16 17 N -0.75 -39.01 5.38 -343.45 -1.85 -40.85 16 18 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 21 N -0.97 -62.61 13.06 21.65 0.28 -62.33 16 22 Si 0.97 47.40 29.55 68.60 2.03 49.42 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 C 0.13 4.16 5.53 86.36 0.48 4.64 16 27 S 0.36 6.28 20.21 -56.49 -1.14 5.13 16 28 N -0.54 -11.00 11.03 -175.20 -1.93 -12.93 16 29 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 31 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 32 H 0.17 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.30 3.78 -19.42 -0.07 1.23 16 35 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 1.15 6.30 -2.39 -0.02 1.14 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 41 H 0.03 1.29 6.15 -2.39 -0.01 1.28 16 42 H 0.37 21.29 6.89 -92.71 -0.64 20.65 16 43 H 0.25 15.64 8.31 -92.70 -0.77 14.87 16 44 H 0.06 2.51 6.20 -2.39 -0.01 2.50 16 45 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -77.20 373.83 0.56 -76.64 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.31 Total: 26.33 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 6.34 Total: 7.90 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -5.93 Total: -134.43 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.05 Total: -30.99 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.14 Total: 5.13 kcal Total: -77.20 0.56 -76.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132831187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.504 kcal (2) G-P(sol) polarization free energy of solvation -77.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds