Wall clock time and date at job start Sat Apr 11 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35964 * 116.99611 * 2 1 4 4 C 1.37572 * 120.82421 * 180.02562 * 3 2 1 5 5 C 1.38046 * 114.24693 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.75708 * 179.97438 * 5 4 3 7 7 O 1.21639 * 119.99859 * 42.28243 * 6 5 4 8 8 N 1.34775 * 119.99756 * 222.28493 * 6 5 4 9 9 C 1.46917 * 120.63147 * 356.03317 * 8 6 5 10 10 C 1.53191 * 108.77715 * 126.37557 * 9 8 6 11 11 C 1.53045 * 109.31316 * 54.62993 * 10 9 8 12 12 H 1.08998 * 109.45596 * 178.61991 * 11 10 9 13 13 C 1.53000 * 109.44760 * 58.65302 * 11 10 9 14 14 C 1.53032 * 109.53779 * 298.63938 * 11 10 9 15 15 H 1.09002 * 109.50008 * 301.40851 * 14 11 10 16 16 C 1.53005 * 109.49798 * 181.34765 * 14 11 10 17 17 N 1.46501 * 109.47199 * 175.06339 * 16 14 11 18 18 C 1.36937 * 119.99548 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00094 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99882 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99568 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00271 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47060 * 59.99514 * 22 20 18 24 24 H 1.48494 * 109.47397 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46970 * 300.00146 * 22 20 18 26 26 C 1.46934 * 120.62586 * 176.01485 * 8 6 5 27 27 S 1.77229 * 104.48093 * 0.24031 * 5 4 3 28 28 N 1.30357 * 120.82772 * 0.02889 * 3 2 1 29 29 H 1.08999 * 109.47124 * 299.99305 * 1 2 3 30 30 H 1.08989 * 109.47198 * 59.99885 * 1 2 3 31 31 H 1.09006 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.07998 * 122.87686 * 0.04705 * 4 3 2 33 33 H 1.08996 * 109.58740 * 6.58272 * 9 8 6 34 34 H 1.09007 * 109.70295 * 246.22725 * 9 8 6 35 35 H 1.09006 * 109.49540 * 294.68187 * 10 9 8 36 36 H 1.09001 * 109.50104 * 174.58441 * 10 9 8 37 37 H 1.08999 * 109.46941 * 299.94006 * 13 11 10 38 38 H 1.09006 * 109.47217 * 59.93797 * 13 11 10 39 39 H 1.08996 * 109.47201 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47209 * 295.06909 * 16 14 11 41 41 H 1.09007 * 109.46794 * 55.06188 * 16 14 11 42 42 H 0.96998 * 119.99678 * 0.02562 * 17 16 14 43 43 H 0.96995 * 119.99936 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58290 * 113.84258 * 26 8 6 45 45 H 1.08996 * 109.58894 * 353.41547 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9005 2.5971 0.0001 6 6 5.3048 3.0355 0.0003 7 8 6.1176 2.4731 -0.7087 8 7 5.6907 4.0602 0.7861 9 6 4.7059 4.8051 1.5822 10 6 5.1609 4.8159 3.0450 11 6 6.5850 5.3702 3.1279 12 1 6.9021 5.4019 4.1703 13 6 6.6166 6.7833 2.5423 14 6 7.5324 4.4680 2.3340 15 1 7.4917 3.4552 2.7350 16 6 8.9611 5.0041 2.4453 17 7 9.8834 4.0770 1.7848 18 6 11.2251 4.3497 1.7571 19 1 11.6033 5.2478 2.2226 20 6 12.0990 3.4715 1.1308 21 7 11.6380 2.3767 0.5640 22 14 13.9291 3.8437 1.0924 23 1 14.4452 3.9335 2.4820 24 1 14.6399 2.7584 0.3700 25 1 14.1571 5.1349 0.3954 26 6 7.1044 4.4532 0.8632 27 16 2.4469 3.6110 0.0086 28 7 1.3520 2.3148 0.0006 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0644 0.4375 -0.0017 33 1 3.7325 4.3206 1.5059 34 1 4.6344 5.8287 1.2142 35 1 5.1424 3.7999 3.4392 36 1 4.4907 5.4459 3.6298 37 1 6.2999 6.7517 1.4998 38 1 5.9418 7.4261 3.1077 39 1 7.6306 7.1786 2.6016 40 1 9.0213 5.9806 1.9647 41 1 9.2326 5.0993 3.4967 42 1 9.5436 3.2702 1.3671 43 1 12.2486 1.7630 0.1267 44 1 7.2308 5.4479 0.4359 45 1 7.7135 3.7365 0.3124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132831190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:02 Heat of formation + Delta-G solvation = -6.408083 kcal Electronic energy + Delta-G solvation = -27516.589229 eV Core-core repulsion = 23662.154439 eV Total energy + Delta-G solvation = -3854.434790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66969 -40.23933 -38.24403 -36.67381 -35.04029 -33.63389 -32.04261 -31.51809 -29.87896 -28.48356 -27.71252 -26.24697 -25.08883 -24.11096 -23.20045 -21.69349 -21.23203 -19.64881 -18.94609 -18.19276 -17.86488 -17.02948 -16.73643 -16.41357 -16.16153 -15.26547 -15.16905 -15.00337 -14.92655 -14.29839 -14.15065 -13.82244 -13.64425 -13.51636 -13.25130 -13.02851 -12.76165 -12.51706 -12.38854 -12.09439 -11.74758 -11.70168 -11.42661 -11.28188 -11.14178 -11.08555 -10.90424 -10.78504 -10.68280 -10.35297 -10.26746 -10.15124 -9.95682 -9.87448 -9.59567 -8.83724 -8.61580 -8.58988 -6.88049 -5.70614 -3.00485 -0.05525 0.77848 1.22493 1.98988 2.45597 2.86472 3.04653 3.47274 3.51391 3.53050 4.13189 4.50210 4.58754 4.63801 4.76334 4.79933 4.86668 4.88456 4.98155 5.10667 5.17664 5.19441 5.24747 5.38893 5.49464 5.58162 5.63422 5.65330 5.76716 5.78106 5.83401 5.90500 5.99337 6.09041 6.28330 6.31156 6.31980 6.47505 6.55470 6.68899 6.75150 6.87007 7.24061 7.73359 7.95640 8.47144 9.58072 10.15562 10.49563 11.51614 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002789 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.304008 B =10036.368547 C =11288.050994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.294 6.294 3 C 0.312 3.688 4 C -0.138 4.138 5 C -0.167 4.167 6 C 0.586 3.414 7 O -0.500 6.500 8 N -0.596 5.596 9 C 0.091 3.909 10 C -0.127 4.127 11 C -0.085 4.085 12 H 0.076 0.924 13 C -0.154 4.154 14 C -0.103 4.103 15 H 0.075 0.925 16 C 0.161 3.839 17 N -0.733 5.733 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.121 3.879 27 S 0.291 5.709 28 N -0.524 5.524 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.024 0.976 41 H 0.022 0.978 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.075 0.925 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.256 3.266 2.690 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.098 3.902 4 C -0.175 4.175 5 C -0.299 4.299 6 C 0.370 3.630 7 O -0.375 6.375 8 N -0.329 5.329 9 C -0.033 4.033 10 C -0.165 4.165 11 C -0.104 4.104 12 H 0.095 0.905 13 C -0.211 4.211 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.033 3.967 17 N -0.378 5.378 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.000 4.000 27 S 0.440 5.560 28 N -0.364 5.364 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.195 0.805 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -26.031 4.338 2.299 26.490 hybrid contribution 1.561 -1.524 -0.116 2.185 sum -24.470 2.813 2.183 24.727 Atomic orbital electron populations 1.22989 0.76652 1.03685 1.02554 1.86328 1.23040 1.22559 1.88061 1.19879 0.89713 0.85278 0.95332 1.20753 0.92489 0.98437 1.05801 1.26071 0.99659 0.97727 1.06438 1.16764 0.84570 0.80521 0.81156 1.90949 1.51744 1.54793 1.40027 1.48025 1.09766 1.31650 1.43463 1.22197 0.91646 0.97277 0.92226 1.21928 0.97383 1.02127 0.95056 1.21088 0.93899 0.95187 1.00257 0.90549 1.22001 1.02501 0.95749 1.00863 1.21712 0.96068 1.00088 0.94381 0.90627 1.20679 0.86545 0.93460 0.96021 1.42411 1.03519 1.25071 1.66803 1.19142 0.83429 1.04870 1.29953 0.91289 1.24756 0.97982 0.97139 1.00980 1.69658 1.33953 1.12607 1.41554 0.86285 0.85494 0.77065 0.77416 1.21347 1.21718 1.21293 1.21886 0.78398 1.02002 0.97675 1.85016 0.89319 1.12090 1.69526 1.76403 1.27098 1.01398 1.31549 0.92084 0.92104 0.87937 0.80522 0.90269 0.90069 0.91331 0.90475 0.92454 0.92999 0.91634 0.95840 0.96053 0.78132 0.93412 0.90667 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.43 101.05 1.05 1.31 16 2 O -0.29 -3.06 10.51 -19.63 -0.21 -3.27 16 3 C 0.31 3.56 7.36 -18.42 -0.14 3.42 16 4 C -0.14 -1.65 10.26 -39.89 -0.41 -2.05 16 5 C -0.17 -2.08 5.82 -36.05 -0.21 -2.29 16 6 C 0.59 8.93 7.64 -12.66 -0.10 8.83 16 7 O -0.50 -9.81 16.53 5.24 0.09 -9.73 16 8 N -0.60 -8.04 2.97 -174.16 -0.52 -8.56 16 9 C 0.09 0.89 5.53 -3.72 -0.02 0.87 16 10 C -0.13 -1.19 5.62 -26.61 -0.15 -1.34 16 11 C -0.09 -0.97 2.71 -90.58 -0.25 -1.21 16 12 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 13 C -0.15 -1.59 8.11 37.16 0.30 -1.29 16 14 C -0.10 -1.58 2.15 -90.50 -0.19 -1.78 16 15 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 16 C 0.16 3.09 5.19 -4.04 -0.02 3.07 16 17 N -0.73 -18.45 5.38 -59.90 -0.32 -18.77 16 18 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 22 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 C 0.12 1.92 5.04 -3.71 -0.02 1.90 16 27 S 0.29 2.92 20.79 -107.50 -2.23 0.69 16 28 N -0.52 -5.90 11.03 29.19 0.32 -5.58 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.12 -51.94 -0.42 0.00 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.08 0.71 3.86 -29.40 -0.11 0.59 16 34 H 0.08 0.68 6.70 -51.93 -0.35 0.33 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.59 4.98 -51.93 -0.26 0.33 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 40 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 10.37 6.90 -40.82 -0.28 10.09 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.08 1.13 6.69 -51.93 -0.35 0.79 16 45 H 0.11 2.13 6.23 -51.93 -0.32 1.81 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -33.46 368.60 -8.14 -41.61 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.14 Total: 6.36 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.39 Total: 2.03 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.21 Total: -60.87 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.12 Total: -13.00 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.23 Total: 0.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.46 -8.14 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132831190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.201 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds