Wall clock time and date at job start Sat Apr 11 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35964 * 116.99611 * 2 1 4 4 C 1.37572 * 120.82421 * 180.02562 * 3 2 1 5 5 C 1.38046 * 114.24693 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.75708 * 179.97438 * 5 4 3 7 7 O 1.21639 * 119.99859 * 42.28243 * 6 5 4 8 8 N 1.34775 * 119.99756 * 222.28493 * 6 5 4 9 9 C 1.46917 * 120.63147 * 356.03317 * 8 6 5 10 10 C 1.53191 * 108.77715 * 126.37557 * 9 8 6 11 11 C 1.53045 * 109.31316 * 54.62993 * 10 9 8 12 12 H 1.08998 * 109.45596 * 178.61991 * 11 10 9 13 13 C 1.53000 * 109.44760 * 58.65302 * 11 10 9 14 14 C 1.53032 * 109.53779 * 298.63938 * 11 10 9 15 15 H 1.09002 * 109.50008 * 301.40851 * 14 11 10 16 16 C 1.53005 * 109.49798 * 181.34765 * 14 11 10 17 17 N 1.46501 * 109.47199 * 175.06339 * 16 14 11 18 18 C 1.36937 * 119.99548 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00094 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99882 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99568 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00271 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47060 * 59.99514 * 22 20 18 24 24 H 1.48494 * 109.47397 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46970 * 300.00146 * 22 20 18 26 26 C 1.46934 * 120.62586 * 176.01485 * 8 6 5 27 27 S 1.77229 * 104.48093 * 0.24031 * 5 4 3 28 28 N 1.30357 * 120.82772 * 0.02889 * 3 2 1 29 29 H 1.08999 * 109.47124 * 299.99305 * 1 2 3 30 30 H 1.08989 * 109.47198 * 59.99885 * 1 2 3 31 31 H 1.09006 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.07998 * 122.87686 * 0.04705 * 4 3 2 33 33 H 1.08996 * 109.58740 * 6.58272 * 9 8 6 34 34 H 1.09007 * 109.70295 * 246.22725 * 9 8 6 35 35 H 1.09006 * 109.49540 * 294.68187 * 10 9 8 36 36 H 1.09001 * 109.50104 * 174.58441 * 10 9 8 37 37 H 1.08999 * 109.46941 * 299.94006 * 13 11 10 38 38 H 1.09006 * 109.47217 * 59.93797 * 13 11 10 39 39 H 1.08996 * 109.47201 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47209 * 295.06909 * 16 14 11 41 41 H 1.09007 * 109.46794 * 55.06188 * 16 14 11 42 42 H 0.96998 * 119.99678 * 0.02562 * 17 16 14 43 43 H 0.96995 * 119.99936 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58290 * 113.84258 * 26 8 6 45 45 H 1.08996 * 109.58894 * 353.41547 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9005 2.5971 0.0001 6 6 5.3048 3.0355 0.0003 7 8 6.1176 2.4731 -0.7087 8 7 5.6907 4.0602 0.7861 9 6 4.7059 4.8051 1.5822 10 6 5.1609 4.8159 3.0450 11 6 6.5850 5.3702 3.1279 12 1 6.9021 5.4019 4.1703 13 6 6.6166 6.7833 2.5423 14 6 7.5324 4.4680 2.3340 15 1 7.4917 3.4552 2.7350 16 6 8.9611 5.0041 2.4453 17 7 9.8834 4.0770 1.7848 18 6 11.2251 4.3497 1.7571 19 1 11.6033 5.2478 2.2226 20 6 12.0990 3.4715 1.1308 21 7 11.6380 2.3767 0.5640 22 14 13.9291 3.8437 1.0924 23 1 14.4452 3.9335 2.4820 24 1 14.6399 2.7584 0.3700 25 1 14.1571 5.1349 0.3954 26 6 7.1044 4.4532 0.8632 27 16 2.4469 3.6110 0.0086 28 7 1.3520 2.3148 0.0006 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0644 0.4375 -0.0017 33 1 3.7325 4.3206 1.5059 34 1 4.6344 5.8287 1.2142 35 1 5.1424 3.7999 3.4392 36 1 4.4907 5.4459 3.6298 37 1 6.2999 6.7517 1.4998 38 1 5.9418 7.4261 3.1077 39 1 7.6306 7.1786 2.6016 40 1 9.0213 5.9806 1.9647 41 1 9.2326 5.0993 3.4967 42 1 9.5436 3.2702 1.3671 43 1 12.2486 1.7630 0.1267 44 1 7.2308 5.4479 0.4359 45 1 7.7135 3.7365 0.3124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132831190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:01 Heat of formation + Delta-G solvation = -31.158038 kcal Electronic energy + Delta-G solvation = -27517.662467 eV Core-core repulsion = 23662.154439 eV Total energy + Delta-G solvation = -3855.508029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73078 -41.13993 -39.42619 -37.53552 -36.67914 -35.02602 -33.52613 -32.63175 -31.45136 -29.23008 -28.68308 -27.60540 -26.28616 -25.11287 -24.88166 -22.65717 -22.59487 -20.71988 -20.02841 -19.23599 -18.91816 -18.73707 -17.73234 -17.28575 -17.22552 -16.76638 -16.39660 -16.15179 -15.82980 -15.64914 -15.44125 -15.07307 -14.79375 -14.69155 -14.45501 -14.29069 -14.12409 -13.79472 -13.16139 -13.03419 -12.98013 -12.82550 -12.67105 -12.58061 -12.44577 -12.17930 -12.16032 -12.05327 -11.95156 -11.88601 -11.73413 -11.51357 -11.25637 -11.13328 -10.91664 -10.88148 -9.75241 -9.39167 -8.97865 -7.92455 -5.22363 -1.00995 -0.12900 0.37269 1.05468 1.40212 1.46675 1.50536 1.56732 1.79769 2.17887 2.57200 3.16379 3.40526 3.59098 3.68920 3.76022 3.85138 4.01189 4.06515 4.19710 4.21862 4.29401 4.35784 4.37065 4.45806 4.48277 4.57775 4.66305 4.71081 4.76204 4.81525 4.92234 4.96234 4.99573 5.12253 5.17496 5.27102 5.31602 5.34960 5.44009 5.51014 5.63244 5.92765 6.12311 6.28302 6.79105 7.33984 8.11195 8.32498 9.30800 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002789 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.304008 B =10036.368547 C =11288.050994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.309 3.691 4 C -0.141 4.141 5 C -0.188 4.188 6 C 0.583 3.417 7 O -0.560 6.560 8 N -0.590 5.590 9 C 0.084 3.916 10 C -0.121 4.121 11 C -0.079 4.079 12 H 0.084 0.916 13 C -0.152 4.152 14 C -0.091 4.091 15 H 0.053 0.947 16 C 0.160 3.840 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.975 3.025 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.276 1.276 26 C 0.129 3.871 27 S 0.354 5.646 28 N -0.531 5.531 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.174 0.826 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.025 0.975 42 H 0.370 0.630 43 H 0.250 0.750 44 H 0.085 0.915 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.613 5.566 4.157 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.211 6.211 3 C 0.096 3.904 4 C -0.179 4.179 5 C -0.319 4.319 6 C 0.369 3.631 7 O -0.439 6.439 8 N -0.321 5.321 9 C -0.038 4.038 10 C -0.159 4.159 11 C -0.098 4.098 12 H 0.102 0.898 13 C -0.209 4.209 14 C -0.111 4.111 15 H 0.071 0.929 16 C 0.033 3.967 17 N -0.391 5.391 18 C -0.376 4.376 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.202 1.202 26 C 0.008 3.992 27 S 0.504 5.496 28 N -0.373 5.373 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.191 0.809 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.043 0.957 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.103 0.897 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.443 6.712 3.827 29.474 hybrid contribution 2.168 -2.178 -0.528 3.118 sum -26.275 4.535 3.300 26.867 Atomic orbital electron populations 1.23258 0.74864 1.05585 1.02681 1.86325 1.24837 1.22125 1.87858 1.19758 0.89403 0.85717 0.95540 1.20818 0.93051 0.98383 1.05617 1.25733 0.99162 0.98966 1.08063 1.17134 0.85349 0.80154 0.80452 1.90915 1.53690 1.56738 1.42554 1.48068 1.09457 1.31370 1.43200 1.22565 0.90971 0.98137 0.92141 1.21943 0.96538 1.02461 0.94977 1.21074 0.93968 0.94994 0.99768 0.89772 1.21988 1.02486 0.95055 1.01330 1.21571 0.95010 0.99844 0.94666 0.92885 1.20872 0.87698 0.92761 0.95333 1.42682 1.03709 1.25580 1.67155 1.19622 0.84823 1.04645 1.28491 0.90262 1.25635 1.02641 0.97306 1.01576 1.69852 1.35164 1.13932 1.43300 0.85186 0.79955 0.76777 0.77696 1.20180 1.22504 1.20184 1.21567 0.79417 1.00849 0.97416 1.84713 0.86621 1.10264 1.68010 1.76329 1.27663 1.01828 1.31436 0.91756 0.92071 0.85278 0.80911 0.89058 0.87466 0.92154 0.86533 0.92418 0.89915 0.93093 0.94843 0.95702 0.79790 0.94170 0.89690 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.43 113.37 1.18 1.56 16 2 O -0.31 -6.07 10.51 -93.14 -0.98 -7.05 16 3 C 0.31 6.76 7.36 84.75 0.62 7.39 16 4 C -0.14 -3.39 10.26 22.07 0.23 -3.16 16 5 C -0.19 -4.63 5.82 24.56 0.14 -4.48 16 6 C 0.58 18.47 7.64 86.57 0.66 19.13 16 7 O -0.56 -23.75 16.53 -4.16 -0.07 -23.82 16 8 N -0.59 -15.88 2.97 -823.15 -2.45 -18.33 16 9 C 0.08 1.42 5.53 86.36 0.48 1.89 16 10 C -0.12 -1.87 5.62 30.67 0.17 -1.70 16 11 C -0.08 -1.60 2.71 -10.77 -0.03 -1.63 16 12 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 13 C -0.15 -2.61 8.11 71.98 0.58 -2.03 16 14 C -0.09 -2.83 2.15 -10.72 -0.02 -2.85 16 15 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 16 C 0.16 6.18 5.19 86.38 0.45 6.63 16 17 N -0.75 -39.01 5.38 -343.43 -1.85 -40.85 16 18 C -0.24 -13.90 9.99 84.04 0.84 -13.06 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 20 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 21 N -0.97 -62.43 13.06 21.65 0.28 -62.15 16 22 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 26 C 0.13 4.25 5.04 86.36 0.44 4.69 16 27 S 0.35 6.28 20.79 -56.49 -1.17 5.11 16 28 N -0.53 -10.93 11.03 -175.21 -1.93 -12.86 16 29 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 30 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 31 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.17 4.15 8.06 -2.91 -0.02 4.12 16 33 H 0.09 1.34 3.86 -16.71 -0.06 1.27 16 34 H 0.11 1.33 6.70 -2.38 -0.02 1.32 16 35 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.99 4.98 -2.39 -0.01 0.98 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.05 1.04 6.57 -2.39 -0.02 1.02 16 40 H 0.03 1.25 6.73 -2.39 -0.02 1.24 16 41 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.37 21.22 6.90 -92.71 -0.64 20.58 16 43 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.09 2.58 6.69 -2.39 -0.02 2.57 16 45 H 0.06 2.45 6.23 -2.39 -0.01 2.44 16 Total: -1.00 -76.65 368.60 0.41 -76.24 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.33 Total: 26.20 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.21 Total: 8.12 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -5.94 Total: -134.19 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.05 Total: -30.86 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.17 Total: 5.11 kcal Total: -76.65 0.41 -76.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132831190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.083 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds