Wall clock time and date at job start Sat Apr 11 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35960 * 116.99890 * 2 1 4 4 C 1.37565 * 120.82896 * 179.97438 * 3 2 1 5 5 C 1.38033 * 114.25178 * 180.02562 * 4 3 2 6 6 C 1.47117 * 127.75937 * 179.97438 * 5 4 3 7 7 O 1.21637 * 120.00226 * 335.13383 * 6 5 4 8 8 N 1.34777 * 120.00072 * 155.13168 * 6 5 4 9 9 C 1.46925 * 120.63024 * 353.51467 * 8 6 5 10 10 C 1.53201 * 108.77368 * 233.58621 * 9 8 6 11 11 C 1.53038 * 109.33546 * 305.35027 * 10 9 8 12 12 H 1.08996 * 109.46157 * 301.35577 * 11 10 9 13 13 C 1.53004 * 109.45584 * 181.40618 * 11 10 9 14 14 N 1.46494 * 109.47482 * 64.99488 * 13 11 10 15 15 C 1.36938 * 119.99880 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99920 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00441 * 179.97438 * 17 15 14 19 19 Si 1.86809 * 120.00018 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.46963 * 89.99930 * 19 17 15 21 21 H 1.48499 * 109.47051 * 209.99854 * 19 17 15 22 22 H 1.48498 * 109.46952 * 329.99879 * 19 17 15 23 23 C 1.53098 * 109.50762 * 61.34792 * 11 10 9 24 24 H 1.08999 * 109.51607 * 178.67870 * 23 11 10 25 25 C 1.53004 * 109.48924 * 58.61391 * 23 11 10 26 26 C 1.46929 * 120.63091 * 173.49387 * 8 6 5 27 27 S 1.77226 * 104.48260 * 0.24218 * 5 4 3 28 28 N 1.30367 * 120.82471 * 0.03104 * 3 2 1 29 29 H 1.08996 * 109.46970 * 299.99269 * 1 2 3 30 30 H 1.08997 * 109.47589 * 59.99735 * 1 2 3 31 31 H 1.09006 * 109.46632 * 179.97438 * 1 2 3 32 32 H 1.08005 * 122.86908 * 0.02562 * 4 3 2 33 33 H 1.08991 * 109.58561 * 113.79812 * 9 8 6 34 34 H 1.08996 * 109.70256 * 353.43762 * 9 8 6 35 35 H 1.09002 * 109.49668 * 65.31229 * 10 9 8 36 36 H 1.08995 * 109.49220 * 185.38127 * 10 9 8 37 37 H 1.08995 * 109.47091 * 185.00064 * 13 11 10 38 38 H 1.09008 * 109.46873 * 304.99208 * 13 11 10 39 39 H 0.97004 * 120.00192 * 0.02562 * 14 13 11 40 40 H 0.96997 * 120.00596 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.46912 * 300.14533 * 25 23 11 42 42 H 1.09001 * 109.47147 * 60.14196 * 25 23 11 43 43 H 1.09000 * 109.47649 * 180.14745 * 25 23 11 44 44 H 1.09001 * 109.58535 * 246.20342 * 26 8 6 45 45 H 1.09005 * 109.58579 * 6.47685 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4188 1.3033 0.0005 5 6 3.9005 2.5969 0.0010 6 6 5.3048 3.0353 0.0022 7 8 6.1699 2.3042 0.4457 8 7 5.6329 4.2470 -0.4883 9 6 4.6251 5.0825 -1.1554 10 6 5.1531 5.4841 -2.5363 11 6 6.5206 6.1533 -2.3809 12 1 6.4261 7.0273 -1.7365 13 6 7.0349 6.5870 -3.7551 14 7 6.1555 7.6238 -4.3008 15 6 6.4187 8.1678 -5.5296 16 1 7.2743 7.8321 -6.0966 17 6 5.5851 9.1498 -6.0469 18 7 5.8383 9.6731 -7.2277 19 14 4.1046 9.7299 -5.0663 20 1 4.4998 10.8706 -4.2016 21 1 3.0327 10.1633 -5.9982 22 1 3.6046 8.6170 -4.2199 23 6 7.5064 5.1630 -1.7553 24 1 8.4864 5.6318 -1.6662 25 6 7.6135 3.9205 -2.6419 26 6 7.0051 4.7578 -0.3657 27 16 2.4470 3.6110 0.0080 28 7 1.3520 2.3149 0.0006 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0643 0.4373 0.0006 33 1 4.4403 5.9769 -0.5606 34 1 3.6980 4.5205 -1.2680 35 1 5.2517 4.5959 -3.1605 36 1 4.4576 6.1815 -3.0029 37 1 8.0456 6.9828 -3.6565 38 1 7.0449 5.7286 -4.4268 39 1 5.3867 7.9251 -3.7916 40 1 5.2560 10.3596 -7.5891 41 1 6.6332 3.4527 -2.7317 42 1 7.9703 4.2093 -3.6305 43 1 8.3134 3.2145 -2.1950 44 1 7.0144 5.6258 0.2935 45 1 7.6491 3.9801 0.0451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184424288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:11 Heat of formation + Delta-G solvation = -26.550340 kcal Electronic energy + Delta-G solvation = -27534.060629 eV Core-core repulsion = 23678.752405 eV Total energy + Delta-G solvation = -3855.308224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70833 -41.13955 -39.40024 -37.52519 -36.72720 -35.00128 -33.54967 -32.46947 -32.20016 -29.26119 -28.76783 -28.07101 -25.96475 -24.98822 -24.33020 -23.14266 -22.35493 -20.70860 -20.08162 -19.88805 -19.02881 -18.74429 -17.54509 -17.29377 -17.14708 -16.79171 -16.55057 -16.06681 -15.81427 -15.54967 -15.26219 -15.17296 -14.87461 -14.82969 -14.45564 -14.39843 -13.97796 -13.80155 -13.63370 -13.27250 -13.02260 -12.87984 -12.71638 -12.55873 -12.54981 -12.16547 -12.14579 -12.10811 -11.85128 -11.82846 -11.57327 -11.51735 -11.28456 -11.11797 -10.92682 -10.88941 -9.77991 -9.40193 -9.24115 -7.99482 -5.32711 -1.03622 -0.05174 0.38708 1.05399 1.39861 1.45336 1.50224 1.52621 1.82806 2.18162 2.52138 3.15316 3.32146 3.56386 3.60419 3.70933 3.78975 3.95088 4.07047 4.10197 4.20458 4.28191 4.33154 4.33387 4.40893 4.48527 4.66002 4.67719 4.69651 4.74843 4.79349 4.81945 4.97153 4.99126 5.06006 5.15494 5.17068 5.25855 5.28377 5.45099 5.59409 5.79581 5.91742 6.09844 6.24394 6.78839 7.12408 7.88461 8.08728 9.22388 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.003082 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.805525 B = 9083.573793 C =10493.012401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.305 6.305 3 C 0.302 3.698 4 C -0.130 4.130 5 C -0.195 4.195 6 C 0.596 3.404 7 O -0.548 6.548 8 N -0.590 5.590 9 C 0.096 3.904 10 C -0.126 4.126 11 C -0.083 4.083 12 H 0.087 0.913 13 C 0.160 3.840 14 N -0.755 5.755 15 C -0.233 4.233 16 H 0.051 0.949 17 C -0.069 4.069 18 N -0.988 5.988 19 Si 0.956 3.044 20 H -0.277 1.277 21 H -0.300 1.300 22 H -0.241 1.241 23 C -0.091 4.091 24 H 0.100 0.900 25 C -0.144 4.144 26 C 0.120 3.880 27 S 0.337 5.663 28 N -0.542 5.542 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.130 0.870 32 H 0.183 0.817 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 -17.199 21.279 28.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.089 3.911 4 C -0.168 4.168 5 C -0.326 4.326 6 C 0.382 3.618 7 O -0.427 6.427 8 N -0.322 5.322 9 C -0.028 4.028 10 C -0.164 4.164 11 C -0.102 4.102 12 H 0.105 0.895 13 C 0.034 3.966 14 N -0.401 5.401 15 C -0.364 4.364 16 H 0.069 0.931 17 C -0.259 4.259 18 N -0.639 5.639 19 Si 0.782 3.218 20 H -0.203 1.203 21 H -0.227 1.227 22 H -0.165 1.165 23 C -0.110 4.110 24 H 0.118 0.882 25 C -0.202 4.202 26 C -0.001 4.001 27 S 0.488 5.512 28 N -0.383 5.383 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.200 0.800 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.747 -16.262 21.356 28.232 hybrid contribution -0.050 -0.745 -0.448 0.871 sum -8.797 -17.008 20.908 28.351 Atomic orbital electron populations 1.23222 0.75107 1.05520 1.02449 1.86304 1.24592 1.22234 1.87970 1.19954 0.89861 0.85601 0.95713 1.20863 0.92605 0.98715 1.04636 1.25921 0.99455 0.98382 1.08851 1.16770 0.85185 0.81476 0.78334 1.90828 1.49476 1.53803 1.48611 1.47968 1.12387 1.16169 1.55627 1.22340 0.90298 0.96142 0.94070 1.21921 0.97263 1.01207 0.96040 1.21296 0.94770 0.98326 0.95808 0.89478 1.20835 0.92783 0.89770 0.93163 1.42691 1.31902 1.46437 1.19058 1.19021 1.08313 1.14805 0.94241 0.93092 1.25576 1.02735 0.99717 0.97921 1.69902 1.41748 1.32162 1.20086 0.85401 0.79029 0.79167 0.78181 1.20345 1.22734 1.16456 1.21434 0.99622 0.95707 0.94235 0.88176 1.21842 1.01363 0.97304 0.99655 1.21880 0.80693 1.00505 0.96987 1.85052 0.87885 1.10349 1.67881 1.76344 1.28689 1.02354 1.30880 0.92107 0.92335 0.85155 0.79950 0.87599 0.89558 0.91662 0.90664 0.95905 0.96116 0.79823 0.93448 0.93527 0.92951 0.92304 0.88413 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.43 113.37 1.18 1.57 16 2 O -0.30 -5.58 10.51 -93.10 -0.98 -6.56 16 3 C 0.30 6.11 7.36 84.75 0.62 6.73 16 4 C -0.13 -2.57 10.18 22.06 0.22 -2.35 16 5 C -0.19 -3.89 6.11 24.55 0.15 -3.74 16 6 C 0.60 13.30 7.65 86.57 0.66 13.96 16 7 O -0.55 -15.27 16.45 -4.15 -0.07 -15.34 16 8 N -0.59 -11.18 2.41 -823.13 -1.98 -13.16 16 9 C 0.10 1.66 5.66 86.37 0.49 2.15 16 10 C -0.13 -2.87 4.90 30.67 0.15 -2.72 16 11 C -0.08 -1.99 1.96 -10.75 -0.02 -2.01 16 12 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 13 C 0.16 5.54 5.19 86.38 0.45 5.99 16 14 N -0.75 -33.01 5.12 -343.46 -1.76 -34.77 16 15 C -0.23 -13.01 10.47 84.03 0.88 -12.13 16 16 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 17 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 18 N -0.99 -63.08 13.97 21.65 0.30 -62.78 16 19 Si 0.96 43.59 27.74 68.60 1.90 45.49 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.24 -9.41 6.52 99.48 0.65 -8.76 16 23 C -0.09 -1.78 2.72 -10.70 -0.03 -1.81 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 C -0.14 -3.20 8.38 71.98 0.60 -2.60 16 26 C 0.12 2.08 5.84 86.36 0.50 2.58 16 27 S 0.34 5.93 20.17 -56.49 -1.14 4.79 16 28 N -0.54 -11.27 11.03 -175.21 -1.93 -13.20 16 29 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 30 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.45 3.77 -19.63 -0.07 1.37 16 35 H 0.06 1.62 6.33 -2.39 -0.02 1.61 16 36 H 0.07 1.92 7.15 -2.39 -0.02 1.90 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.02 0.77 6.75 -2.38 -0.02 0.75 16 39 H 0.37 14.89 4.71 -92.71 -0.44 14.45 16 40 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.05 1.10 5.97 -2.39 -0.01 1.09 16 42 H 0.05 1.28 6.59 -2.39 -0.02 1.26 16 43 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 1.76 7.00 -2.38 -0.02 1.74 16 Total: -1.00 -72.37 366.42 1.14 -71.22 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.46 Total: 22.20 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.33 Total: 2.12 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -5.37 Total: -123.91 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.05 Total: -21.90 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.90 Total: 45.49 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.14 Total: 4.79 kcal Total: -72.37 1.14 -71.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184424288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.673 kcal (2) G-P(sol) polarization free energy of solvation -72.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds