Wall clock time and date at job start Sat Apr 11 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47525 * 4.82197 * 3 2 1 5 5 C 1.34779 * 120.00517 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99516 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00402 * 179.97438 * 5 4 3 8 8 N 1.46897 * 109.47194 * 179.97438 * 7 5 4 9 9 C 1.47905 * 111.00050 * 169.99666 * 8 7 5 10 10 C 1.53991 * 107.22505 * 214.25344 * 9 8 7 11 11 H 1.09005 * 110.30467 * 120.04331 * 10 9 8 12 12 C 1.53001 * 110.30958 * 242.11113 * 10 9 8 13 13 C 1.54594 * 105.14285 * 1.12969 * 10 9 8 14 14 H 1.08999 * 110.72080 * 263.59761 * 13 10 9 15 15 N 1.46501 * 110.72774 * 140.49201 * 13 10 9 16 16 C 1.34772 * 120.00171 * 154.99948 * 15 13 10 17 17 O 1.21281 * 119.99683 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99893 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47244 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00163 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99998 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31635 * 120.00117 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00191 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47143 * 89.99893 * 24 22 20 26 26 H 1.48494 * 109.46857 * 210.00250 * 24 22 20 27 27 H 1.48505 * 109.46731 * 329.99755 * 24 22 20 28 28 C 1.48813 * 111.18681 * 52.66331 * 8 7 5 29 29 H 4.40634 * 5.51446 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47163 * 244.81224 * 3 2 1 31 31 H 1.09008 * 109.47208 * 124.81612 * 3 2 1 32 32 H 0.97004 * 120.00040 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.47620 * 59.99366 * 7 5 4 34 34 H 1.09011 * 109.46935 * 299.99480 * 7 5 4 35 35 H 1.09002 * 109.91668 * 94.80258 * 9 8 7 36 36 H 1.09002 * 109.91761 * 333.70433 * 9 8 7 37 37 H 1.09001 * 109.47038 * 58.54864 * 12 10 9 38 38 H 1.09003 * 109.46771 * 178.54801 * 12 10 9 39 39 H 1.09003 * 109.47058 * 298.54719 * 12 10 9 40 40 H 0.97002 * 119.99561 * 334.99660 * 15 13 10 41 41 H 1.08996 * 109.47588 * 299.99896 * 18 16 15 42 42 H 1.09001 * 109.47329 * 60.00087 * 18 16 15 43 43 H 0.96997 * 119.99889 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.51915 * 41.07024 * 28 8 7 45 45 H 1.09009 * 110.83927 * 278.09443 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3754 -0.1161 5 6 4.4602 -1.6203 -0.1363 6 8 5.2479 -0.7013 -0.0588 7 6 4.9632 -3.0358 -0.2551 8 7 6.4322 -3.0351 -0.2552 9 6 6.9629 -4.4099 -0.1300 10 6 8.2613 -4.3242 0.6935 11 1 8.1739 -4.9217 1.6010 12 6 9.4521 -4.7995 -0.1415 13 6 8.4159 -2.8277 1.0492 14 1 9.0805 -2.3301 0.3430 15 7 8.9067 -2.6687 2.4204 16 6 9.5761 -1.5529 2.7715 17 8 9.7726 -0.6806 1.9521 18 6 10.0804 -1.3892 4.1821 19 16 10.9320 0.2004 4.3377 20 6 11.4039 0.1299 6.0338 21 1 11.1462 -0.7325 6.6307 22 6 12.1077 1.1824 6.6026 23 7 12.4222 2.2333 5.8751 24 14 12.6087 1.1075 8.4007 25 1 13.9478 0.4762 8.5155 26 1 12.6603 2.4830 8.9578 27 1 11.6159 0.3036 9.1580 28 6 6.9697 -2.2885 0.9144 29 1 -1.0498 -0.0005 0.0001 30 1 3.0091 0.4382 0.9300 31 1 3.0091 0.5876 -0.8438 32 1 2.5050 -2.1104 -0.1777 33 1 4.6003 -3.4735 -1.1851 34 1 4.5999 -3.6225 0.5887 35 1 7.1762 -4.8171 -1.1183 36 1 6.2386 -5.0422 0.3835 37 1 9.5341 -4.1866 -1.0392 38 1 10.3663 -4.7089 0.4451 39 1 9.3041 -5.8415 -0.4252 40 1 8.7498 -3.3666 3.0756 41 1 9.2393 -1.4205 4.8746 42 1 10.7739 -2.1969 4.4161 43 1 12.9137 2.9690 6.2727 44 1 6.3904 -2.5129 1.8100 45 1 6.9756 -1.2158 0.7204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206090372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:25 Heat of formation + Delta-G solvation = -34.269145 kcal Electronic energy + Delta-G solvation = -26251.541216 eV Core-core repulsion = 22395.898280 eV Total energy + Delta-G solvation = -3855.642936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46862 -40.66085 -39.29821 -36.59142 -35.57094 -34.58980 -33.84448 -33.52262 -31.33672 -30.04171 -28.66105 -27.65193 -27.36979 -25.42184 -22.83817 -21.75838 -21.60907 -21.22264 -19.80596 -19.60813 -18.11208 -17.87367 -17.65841 -16.95903 -16.88609 -16.86954 -16.46452 -16.19821 -16.08629 -15.32188 -15.26300 -14.84539 -14.68200 -14.52554 -14.46450 -14.35414 -14.26420 -13.85867 -13.54292 -13.22819 -13.17120 -12.97012 -12.89539 -12.61704 -12.52623 -12.19184 -11.92840 -11.82651 -11.73608 -11.63640 -11.49583 -11.14751 -10.95848 -10.73059 -10.27655 -10.21230 -10.06361 -9.40329 -8.67989 -8.34795 -6.13565 1.25530 1.36899 1.42245 1.46059 1.55815 1.56640 1.59764 1.79665 2.18607 2.27146 2.41008 2.98989 3.08198 3.31602 3.33490 3.49446 3.61885 3.83012 3.95251 3.99292 4.16359 4.27944 4.29722 4.34200 4.42167 4.46520 4.48212 4.52099 4.58405 4.66332 4.87187 4.95510 4.96850 5.05539 5.11795 5.12881 5.35405 5.37406 5.40994 5.45430 5.79472 5.94691 6.19369 6.47808 6.50305 6.53894 7.05844 7.21086 7.25596 8.74567 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.002377 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.227527 B =11776.631753 C =13865.009335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.249 4.249 3 C 0.231 3.769 4 N -0.716 5.716 5 C 0.504 3.496 6 O -0.567 6.567 7 C 0.034 3.966 8 N -0.518 5.518 9 C 0.045 3.955 10 C -0.098 4.098 11 H 0.105 0.895 12 C -0.140 4.140 13 C 0.141 3.859 14 H 0.069 0.931 15 N -0.703 5.703 16 C 0.533 3.467 17 O -0.565 6.565 18 C -0.127 4.127 19 S -0.155 6.155 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.010 3.990 23 N -0.912 5.912 24 Si 1.001 2.999 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.257 1.257 28 C 0.034 3.966 29 H 0.256 0.744 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.418 0.582 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.417 0.583 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.046 0.954 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.289 -21.042 -12.078 34.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.250 4.250 3 C 0.108 3.892 4 N -0.371 5.371 5 C 0.291 3.709 6 O -0.445 6.445 7 C -0.097 4.097 8 N -0.243 5.243 9 C -0.082 4.082 10 C -0.118 4.118 11 H 0.123 0.877 12 C -0.197 4.197 13 C 0.035 3.965 14 H 0.087 0.913 15 N -0.357 5.357 16 C 0.319 3.681 17 O -0.442 6.442 18 C -0.278 4.278 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.823 3.177 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.181 1.181 28 C -0.095 4.095 29 H 0.272 0.728 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.158 0.842 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.254 0.746 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.160 -18.557 -13.903 32.773 hybrid contribution -0.430 -0.963 2.748 2.943 sum -23.590 -19.521 -11.155 32.588 Atomic orbital electron populations 1.25857 0.96631 0.95055 0.98538 1.22913 0.94339 1.04808 1.02916 1.17882 0.84136 0.84482 1.02691 1.45826 1.06848 1.09031 1.75355 1.21222 0.81894 0.92510 0.75249 1.90778 1.55859 1.47990 1.49836 1.22355 0.89006 0.92057 1.06254 1.64620 1.06590 1.12568 1.40565 1.23100 0.94952 0.88570 1.01602 1.22274 0.96412 0.92753 1.00328 0.87661 1.21813 0.96444 1.02201 0.99253 1.21946 0.94311 0.97447 0.82788 0.91318 1.45690 1.56986 1.20146 1.12900 1.20156 0.77109 0.81861 0.89008 1.90714 1.57794 1.42506 1.53210 1.23356 1.04388 1.03508 0.96563 1.85682 1.70991 1.20590 1.15574 1.23202 1.42222 1.08140 0.95725 0.89782 1.26186 0.94872 0.93866 1.04480 1.70200 1.38130 1.07805 1.38735 0.84915 0.78976 0.77913 0.75919 1.19181 1.20336 1.18099 1.23585 0.94292 0.99971 0.91640 0.72823 0.90472 0.89937 0.74462 0.84247 0.88628 0.88249 0.90327 0.93202 0.93436 0.89679 0.74563 0.87296 0.86893 0.92008 0.93585 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 19.25 74.32 1.43 0.07 16 2 C -0.25 -3.54 13.46 31.13 0.42 -3.12 16 3 C 0.23 3.99 6.15 84.57 0.52 4.51 16 4 N -0.72 -10.32 5.54 -472.13 -2.61 -12.94 16 5 C 0.50 10.33 7.54 87.65 0.66 10.99 16 6 O -0.57 -18.48 13.54 -3.05 -0.04 -18.52 16 7 C 0.03 0.44 5.52 85.56 0.47 0.91 16 8 N -0.52 -10.20 5.27 -886.78 -4.67 -14.87 16 9 C 0.04 0.55 6.35 86.44 0.55 1.10 16 10 C -0.10 -1.51 3.32 -9.92 -0.03 -1.55 16 11 H 0.11 1.14 7.75 -2.38 -0.02 1.12 16 12 C -0.14 -2.13 8.89 71.98 0.64 -1.49 16 13 C 0.14 3.70 2.97 46.19 0.14 3.84 16 14 H 0.07 2.35 7.27 -2.39 -0.02 2.34 16 15 N -0.70 -19.33 5.18 -436.85 -2.26 -21.59 16 16 C 0.53 21.21 7.85 87.66 0.69 21.89 16 17 O -0.56 -28.67 15.51 -3.03 -0.05 -28.72 16 18 C -0.13 -5.26 6.16 71.23 0.44 -4.82 16 19 S -0.16 -8.99 20.57 -56.49 -1.16 -10.16 16 20 C -0.55 -31.87 9.50 67.95 0.65 -31.23 16 21 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 22 C 0.01 0.61 5.49 84.86 0.47 1.08 16 23 N -0.91 -57.50 13.22 21.65 0.29 -57.21 16 24 Si 1.00 44.42 29.55 68.60 2.03 46.45 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 28 C 0.03 0.93 5.00 86.59 0.43 1.36 16 29 H 0.26 0.28 7.80 -4.43 -0.03 0.25 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.42 3.08 8.45 -92.71 -0.78 2.30 16 33 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 0.71 7.81 -2.38 -0.02 0.69 16 35 H 0.10 1.01 7.68 -2.39 -0.02 1.00 16 36 H 0.08 0.52 7.57 -2.39 -0.02 0.50 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.42 7.97 8.39 -92.71 -0.78 7.19 16 41 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 42 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 43 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 44 H 0.05 1.15 8.02 -2.39 -0.02 1.13 16 45 H 0.07 2.59 6.01 -2.38 -0.01 2.57 16 Total: -1.00 -90.97 395.15 -1.56 -92.53 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.55 Total: 21.47 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 7.47 Total: 3.55 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -9.26 Total: -106.61 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.09 Total: -47.24 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.16 Total: -10.16 kcal Total: -90.97 -1.56 -92.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.265 kcal (2) G-P(sol) polarization free energy of solvation -90.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds