Wall clock time and date at job start Sat Apr 11 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 S 1.81396 * 109.46911 * 97.08189 * 3 2 1 5 5 C 1.81398 * 102.99940 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47590 * 179.97438 * 5 4 3 7 7 N 1.46490 * 109.47382 * 180.02562 * 6 5 4 8 8 C 1.34784 * 120.00165 * 180.02562 * 7 6 5 9 9 O 1.21354 * 119.99283 * 359.97438 * 8 7 6 10 10 C 1.49445 * 120.00334 * 179.97438 * 8 7 6 11 11 O 1.21348 * 119.99859 * 0.02562 * 10 8 7 12 12 N 1.34774 * 120.00270 * 179.97438 * 10 8 7 13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 8 14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10 27 27 H 4.62827 * 6.06363 * 179.97438 * 4 1 2 28 28 H 1.08993 * 109.47068 * 337.07818 * 3 2 1 29 29 H 1.08995 * 109.46560 * 217.07856 * 3 2 1 30 30 H 1.09003 * 109.47312 * 60.00094 * 5 4 3 31 31 H 1.08999 * 109.47379 * 299.99651 * 5 4 3 32 32 H 1.09003 * 109.46407 * 59.99919 * 6 5 4 33 33 H 1.08999 * 109.46785 * 300.00394 * 6 5 4 34 34 H 0.97003 * 120.00686 * 0.02562 * 7 6 5 35 35 H 0.97005 * 119.99791 * 0.02562 * 12 10 8 36 36 H 1.08998 * 109.45866 * 324.97703 * 13 12 10 37 37 H 1.09002 * 109.39343 * 61.36176 * 14 13 12 38 38 H 1.09003 * 109.62467 * 301.25403 * 14 13 12 39 39 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 40 40 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 41 41 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 43 43 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 44 44 H 1.09002 * 109.49555 * 58.67538 * 26 13 12 45 45 H 1.08992 * 109.52043 * 298.59539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2506 0.2118 -1.6972 5 6 5.0530 0.1882 -1.4943 6 6 5.7224 0.3575 -2.8596 7 7 7.1779 0.3378 -2.6958 8 6 7.9791 0.4719 -3.7714 9 8 7.4945 0.6084 -4.8755 10 6 9.4640 0.4524 -3.6042 11 8 9.9485 0.3154 -2.5001 12 7 10.2651 0.5859 -4.6797 13 6 11.7208 0.5662 -4.5159 14 6 12.2128 -0.8832 -4.5065 15 6 13.7313 -0.9010 -4.3041 16 7 14.3578 -0.0548 -5.3289 17 6 15.3551 -0.5483 -6.1270 18 1 15.5002 -0.1482 -7.1196 19 6 16.1796 -1.5627 -5.6602 20 7 16.2369 -1.8237 -4.3714 21 14 17.2079 -2.5576 -6.8611 22 1 18.1314 -1.6519 -7.5907 23 1 17.9952 -3.5726 -6.1161 24 1 16.3142 -3.2396 -7.8314 25 6 13.8942 1.3312 -5.4807 26 6 12.3744 1.3244 -5.6736 27 1 -1.0500 -0.0002 0.0000 28 1 3.0098 -0.9456 0.4002 29 1 3.0089 0.8207 0.6196 30 1 5.3570 -0.7627 -1.0565 31 1 5.3554 1.0037 -0.8374 32 1 5.4184 1.3083 -3.2977 33 1 5.4199 -0.4583 -3.5162 34 1 7.5653 0.2283 -1.8132 35 1 9.8778 0.6951 -5.5624 36 1 11.9865 1.0439 -3.5729 37 1 11.9671 -1.3550 -5.4579 38 1 11.7312 -1.4281 -3.6945 39 1 14.1004 -1.9223 -4.3978 40 1 13.9724 -0.5147 -3.3138 41 1 16.8134 -2.5323 -4.0451 42 1 14.1465 1.9010 -4.5864 43 1 14.3728 1.7835 -6.3493 44 1 12.0054 2.3499 -5.6913 45 1 12.1293 0.8332 -6.6151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258234664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:31 Heat of formation + Delta-G solvation = -19.319066 kcal Electronic energy + Delta-G solvation = -25736.255684 eV Core-core repulsion = 21881.261032 eV Total energy + Delta-G solvation = -3854.994652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82071 -40.07969 -38.84698 -36.88817 -35.97719 -34.97869 -33.92332 -31.96253 -31.79568 -31.27620 -29.56899 -27.45927 -26.01523 -24.11065 -23.92031 -23.03399 -21.52700 -21.11351 -19.75178 -19.23164 -18.64893 -18.12789 -17.28250 -17.19477 -16.92961 -16.76341 -16.39774 -16.24556 -15.63510 -15.37321 -15.35807 -15.33755 -15.11735 -14.82028 -14.74318 -14.22455 -14.17926 -14.08729 -13.34309 -13.21432 -13.03395 -12.96561 -12.90227 -12.62933 -12.56505 -12.14646 -12.08268 -11.85253 -11.67133 -11.57621 -11.40180 -11.34092 -10.87862 -10.73300 -10.57600 -10.43424 -10.17492 -8.79744 -8.70248 -7.87135 -5.32951 0.10760 0.29414 1.20331 1.47435 1.49008 1.51356 1.57620 1.79941 2.09617 2.19196 2.52440 2.64282 3.28935 3.32053 3.38957 3.54497 3.67625 3.82574 3.82975 4.02263 4.22432 4.29043 4.32664 4.37173 4.45922 4.61204 4.65360 4.71446 4.73827 4.82225 4.99531 5.00629 5.01766 5.04084 5.11696 5.30631 5.33826 5.46480 5.64830 5.70579 5.86042 6.31357 6.39510 6.56753 6.68350 6.91114 7.14658 7.85336 8.37259 9.19739 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.001571 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.379868 B =17818.917472 C =18128.268940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.226 4.226 3 C 0.030 3.970 4 S -0.263 6.263 5 C -0.096 4.096 6 C 0.136 3.864 7 N -0.686 5.686 8 C 0.516 3.484 9 O -0.538 6.538 10 C 0.505 3.495 11 O -0.544 6.544 12 N -0.682 5.682 13 C 0.159 3.841 14 C -0.133 4.133 15 C 0.183 3.817 16 N -0.610 5.610 17 C -0.265 4.265 18 H 0.072 0.928 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.274 1.274 23 H -0.296 1.296 24 H -0.278 1.278 25 C 0.143 3.857 26 C -0.125 4.125 27 H 0.251 0.749 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.423 0.577 35 H 0.418 0.582 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.056 0.944 40 H -0.004 1.004 41 H 0.250 0.750 42 H 0.017 0.983 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.774 5.683 7.936 30.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.227 4.227 3 C -0.117 4.117 4 S -0.035 6.035 5 C -0.244 4.244 6 C 0.013 3.987 7 N -0.341 5.341 8 C 0.296 3.704 9 O -0.415 6.415 10 C 0.285 3.715 11 O -0.422 6.422 12 N -0.334 5.334 13 C 0.056 3.944 14 C -0.173 4.173 15 C 0.056 3.944 16 N -0.333 5.333 17 C -0.395 4.395 18 H 0.089 0.911 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.223 1.223 24 H -0.204 1.204 25 C 0.017 3.983 26 C -0.165 4.165 27 H 0.267 0.733 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.261 0.739 35 H 0.256 0.744 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.014 0.986 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -29.193 5.706 7.059 30.571 hybrid contribution 1.434 -0.916 0.825 1.891 sum -27.759 4.790 7.884 29.252 Atomic orbital electron populations 1.25799 0.96815 0.98778 0.96644 1.22336 0.94092 1.02736 1.03550 1.20216 0.88399 1.07733 0.95320 1.87453 1.04959 1.97016 1.14042 1.23499 0.92887 1.08001 1.00002 1.21061 0.77403 1.03776 0.96502 1.45634 1.06591 1.71204 1.10620 1.19980 0.87406 0.77909 0.85092 1.90773 1.76507 1.48681 1.25552 1.20249 0.87982 0.78099 0.85122 1.90770 1.76772 1.49045 1.25607 1.45955 1.06730 1.70133 1.10551 1.20909 0.77216 0.96213 1.00101 1.22355 0.97715 0.96286 1.00970 1.20477 0.88444 0.95997 0.89478 1.44336 1.40338 1.08032 1.40614 1.19524 1.07424 1.17402 0.95160 0.91064 1.25814 0.99131 1.02756 0.96814 1.70181 1.41718 1.33094 1.13196 0.85353 0.78419 0.78394 0.78345 1.19918 1.22270 1.20444 1.21030 0.92553 0.85659 0.99078 1.22177 0.96365 1.00679 0.97240 0.73252 0.86100 0.85995 0.87162 0.86953 0.90222 0.90491 0.73923 0.74428 0.90812 0.92254 0.92750 0.92594 0.98579 0.94134 0.96462 0.91453 0.88887 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 19.25 74.32 1.43 -0.17 16 2 C -0.23 -2.87 13.35 31.13 0.42 -2.45 16 3 C 0.03 0.27 6.42 70.18 0.45 0.72 16 4 S -0.26 -3.40 21.69 -56.49 -1.23 -4.62 16 5 C -0.10 -0.81 6.05 71.98 0.44 -0.37 16 6 C 0.14 1.87 5.68 86.38 0.49 2.36 16 7 N -0.69 -11.38 5.55 -464.42 -2.58 -13.95 16 8 C 0.52 12.09 7.89 87.27 0.69 12.78 16 9 O -0.54 -14.73 16.48 -3.26 -0.05 -14.78 16 10 C 0.51 13.82 7.85 87.27 0.69 14.50 16 11 O -0.54 -17.42 16.14 -3.24 -0.05 -17.47 16 12 N -0.68 -18.41 5.07 -443.70 -2.25 -20.65 16 13 C 0.16 5.17 2.41 45.03 0.11 5.28 16 14 C -0.13 -5.14 5.66 30.69 0.17 -4.96 16 15 C 0.18 8.91 5.30 86.37 0.46 9.37 16 16 N -0.61 -30.06 3.00 -699.07 -2.09 -32.15 16 17 C -0.27 -14.35 9.58 84.03 0.81 -13.54 16 18 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 19 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 20 N -0.94 -55.54 11.20 21.65 0.24 -55.30 16 21 Si 0.97 44.56 29.59 68.60 2.03 46.59 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.14 5.58 6.52 86.36 0.56 6.14 16 26 C -0.13 -3.79 5.55 30.67 0.17 -3.62 16 27 H 0.25 0.58 7.80 -4.42 -0.03 0.54 16 28 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.42 5.75 7.94 -92.71 -0.74 5.01 16 35 H 0.42 9.83 8.07 -92.70 -0.75 9.08 16 36 H 0.07 2.63 7.58 -2.39 -0.02 2.62 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 3.10 6.06 -2.39 -0.01 3.09 16 40 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 2.52 7.93 -2.38 -0.02 2.50 16 44 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -71.56 395.76 0.84 -70.72 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -0.48 Total: 17.94 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 7.29 Total: 23.69 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -6.68 Total: -122.06 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.11 Total: -32.26 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.23 Total: -4.62 kcal Total: -71.56 0.84 -70.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258234664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.404 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds