Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47311 * 2 1 4 4 O 1.42902 * 109.47151 * 119.99922 * 2 1 3 5 5 C 1.42905 * 114.00020 * 90.00091 * 4 2 1 6 6 C 1.50691 * 109.47233 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00230 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.47062 * 120.80029 * 179.97438 * 8 6 5 10 10 C 1.53295 * 108.60784 * 115.31048 * 9 8 6 11 11 C 1.50992 * 108.95790 * 45.06357 * 10 9 8 12 12 S 1.75959 * 126.02852 * 162.31687 * 11 10 9 13 13 C 1.70908 * 90.30364 * 179.63406 * 12 11 10 14 14 C 1.50706 * 124.92348 * 180.08570 * 13 12 11 15 15 N 1.46498 * 109.46936 * 270.00005 * 14 13 12 16 16 C 1.36937 * 119.99954 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00180 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47089 * 60.00272 * 20 18 16 22 22 H 1.48505 * 109.47340 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47514 * 300.00169 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 13 12 11 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 13 12 26 26 C 1.47032 * 120.79813 * 0.02647 * 8 6 5 27 27 H 1.09000 * 109.47204 * 59.99982 * 1 2 3 28 28 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46758 * 299.99889 * 1 2 3 30 30 H 1.09004 * 109.47138 * 239.99871 * 2 1 3 31 31 H 1.09005 * 109.47309 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47001 * 300.00142 * 3 2 1 33 33 H 1.08999 * 109.47119 * 60.00332 * 3 2 1 34 34 H 1.09004 * 109.47227 * 59.99520 * 5 4 2 35 35 H 1.09003 * 109.46774 * 300.00266 * 5 4 2 36 36 H 1.09000 * 109.61084 * 355.58151 * 9 8 6 37 37 H 1.08993 * 109.62093 * 235.05151 * 9 8 6 38 38 H 1.08995 * 109.56075 * 285.21909 * 10 9 8 39 39 H 1.09002 * 109.55673 * 164.90458 * 10 9 8 40 40 H 1.08997 * 109.47196 * 30.00065 * 14 13 12 41 41 H 1.08993 * 109.46898 * 150.00160 * 14 13 12 42 42 H 0.97001 * 120.00055 * 0.02562 * 15 14 13 43 43 H 0.97002 * 120.00370 * 179.97438 * 19 18 16 44 44 H 1.08991 * 109.82279 * 105.66759 * 26 8 6 45 45 H 1.09007 * 109.80660 * 344.76649 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7002 -2.6834 2.2749 7 8 2.8742 -1.9811 3.2482 8 7 2.9543 -4.0053 2.3437 9 6 3.4434 -4.6142 3.5897 10 6 2.3810 -5.5909 4.1068 11 6 1.8786 -6.4251 2.9529 12 16 1.0033 -7.9463 3.0795 13 6 0.9045 -8.0417 1.3759 14 6 0.2387 -9.1568 0.6114 15 7 1.2177 -10.2104 0.3331 16 6 0.8396 -11.3318 -0.3558 17 1 -0.1806 -11.4396 -0.6937 18 6 1.7673 -12.3300 -0.6200 19 7 3.0104 -12.1988 -0.2079 20 14 1.2512 -13.8599 -1.5592 21 1 0.7505 -13.4710 -2.9021 22 1 2.4184 -14.7656 -1.7099 23 1 0.1745 -14.5593 -0.8129 24 7 1.4805 -7.0230 0.8408 25 6 2.0232 -6.1248 1.6485 26 6 2.7502 -4.8730 1.1744 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 2.9319 -2.2468 0.1986 35 1 1.2538 -2.5434 0.7125 36 1 3.6180 -3.8364 4.3331 37 1 4.3710 -5.1522 3.3947 38 1 1.5521 -5.0321 4.5411 39 1 2.8205 -6.2413 4.8630 40 1 -0.5780 -9.5673 1.2052 41 1 -0.1545 -8.7688 -0.3282 42 1 2.1339 -10.1138 0.6369 43 1 3.6587 -12.8965 -0.3922 44 1 3.7137 -5.1457 0.7438 45 1 2.1458 -4.3541 0.4303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264188874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -42.404506 kcal Electronic energy + Delta-G solvation = -26527.725427 eV Core-core repulsion = 22671.729715 eV Total energy + Delta-G solvation = -3855.995712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71468 -40.53570 -39.09508 -37.59683 -36.46122 -34.08402 -33.63904 -33.23902 -31.19265 -29.20827 -28.43613 -28.07028 -26.69180 -25.39008 -24.14674 -23.26037 -22.27242 -20.97176 -19.60474 -19.29939 -18.96330 -18.19477 -17.82114 -17.21893 -16.91313 -16.81199 -16.32486 -15.98036 -15.64138 -15.60013 -15.25135 -14.93067 -14.89643 -14.67190 -14.18193 -14.04417 -13.86947 -13.81498 -13.57965 -13.47732 -13.07940 -13.05837 -12.97346 -12.91134 -12.72897 -12.44995 -12.36787 -12.18654 -12.14442 -11.88173 -11.65811 -11.02002 -10.96368 -10.67801 -10.61614 -10.23816 -9.94574 -9.64546 -9.09743 -7.96720 -5.28910 -0.37217 0.31180 0.74265 1.38479 1.49422 1.52828 1.53042 1.58575 1.65642 2.55935 2.66751 2.97811 3.37752 3.40353 3.66012 3.79831 3.83992 3.99014 4.02750 4.07335 4.12221 4.16924 4.23040 4.25583 4.28759 4.32507 4.47001 4.54234 4.69858 4.74374 4.77134 4.81198 4.83772 4.86655 4.89763 4.94712 5.13209 5.21479 5.28720 5.32647 5.47683 6.03456 6.21322 6.23119 6.71949 6.96572 7.29276 7.95270 8.22337 9.26277 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.002296 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.640164 B =12194.272808 C =13123.929559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 C -0.148 4.148 4 O -0.389 6.389 5 C 0.042 3.958 6 C 0.522 3.478 7 O -0.560 6.560 8 N -0.608 5.608 9 C 0.115 3.885 10 C -0.050 4.050 11 C -0.225 4.225 12 S 0.162 5.838 13 C 0.038 3.962 14 C 0.227 3.773 15 N -0.736 5.736 16 C -0.249 4.249 17 H 0.085 0.915 18 C -0.072 4.072 19 N -0.969 5.969 20 Si 0.980 3.020 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.274 1.274 24 N -0.478 5.478 25 C 0.027 3.973 26 C 0.196 3.804 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.109 0.891 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 23.465 4.013 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 C -0.205 4.205 4 O -0.308 6.308 5 C -0.037 4.037 6 C 0.312 3.688 7 O -0.438 6.438 8 N -0.342 5.342 9 C -0.008 4.008 10 C -0.091 4.091 11 C -0.347 4.347 12 S 0.420 5.580 13 C -0.240 4.240 14 C 0.098 3.902 15 N -0.380 5.380 16 C -0.380 4.380 17 H 0.102 0.898 18 C -0.265 4.265 19 N -0.619 5.619 20 Si 0.808 3.192 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.200 1.200 24 N -0.193 5.193 25 C -0.107 4.107 26 C 0.071 3.929 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.126 0.874 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.757 23.199 4.857 23.862 hybrid contribution 0.494 -0.666 -0.897 1.222 sum -2.263 22.533 3.960 22.990 Atomic orbital electron populations 1.22314 0.95368 1.02500 1.03104 1.22427 0.94252 0.94370 0.87542 1.21877 1.01692 0.93850 1.03129 1.88020 1.87044 1.18398 1.37371 1.22420 1.02791 0.83702 0.94826 1.20671 0.76613 0.81274 0.90287 1.90700 1.52984 1.60769 1.39331 1.48053 1.65921 1.06653 1.13574 1.21759 0.96443 0.96340 0.86291 1.20612 0.99357 0.95866 0.93251 1.26318 1.08453 1.00152 0.99750 1.83802 1.50523 1.17024 1.06651 1.26848 1.02876 0.98452 0.95835 1.19297 0.90996 0.83770 0.96161 1.42416 1.09277 1.18464 1.67820 1.19605 0.95831 0.95380 1.27222 0.89750 1.25639 0.95700 1.02217 1.02919 1.69830 1.03536 1.35703 1.52788 0.85132 0.76623 0.78814 0.78656 1.20257 1.22307 1.19996 1.65729 1.10968 1.02780 1.39862 1.21272 1.02477 0.98479 0.88439 1.20425 1.00536 0.85153 0.86815 0.89581 0.92630 0.92846 0.89998 0.92248 0.88929 0.92800 0.87201 0.88635 0.87769 0.88878 0.89318 0.87005 0.92637 0.93214 0.79496 0.93888 0.87357 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.53 71.98 0.69 -1.53 16 2 C 0.07 0.99 3.34 30.59 0.10 1.09 16 3 C -0.15 -1.81 9.56 71.98 0.69 -1.12 16 4 O -0.39 -8.20 9.52 -129.94 -1.24 -9.44 16 5 C 0.04 0.70 4.62 71.23 0.33 1.03 16 6 C 0.52 11.82 7.78 87.65 0.68 12.50 16 7 O -0.56 -17.22 15.92 15.99 0.25 -16.97 16 8 N -0.61 -11.96 2.92 -819.76 -2.39 -14.35 16 9 C 0.12 2.08 6.41 86.37 0.55 2.63 16 10 C -0.05 -0.93 6.44 30.04 0.19 -0.74 16 11 C -0.22 -5.68 6.43 24.95 0.16 -5.52 16 12 S 0.16 4.66 23.17 -56.49 -1.31 3.35 16 13 C 0.04 1.35 6.75 88.57 0.60 1.94 16 14 C 0.23 9.14 6.84 85.64 0.59 9.72 16 15 N -0.74 -37.34 5.59 -347.19 -1.94 -39.28 16 16 C -0.25 -13.61 9.99 84.03 0.84 -12.77 16 17 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 19 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 20 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 N -0.48 -16.32 10.51 -176.92 -1.86 -18.18 16 25 C 0.03 0.72 6.87 42.16 0.29 1.01 16 26 C 0.20 3.77 6.65 86.05 0.57 4.35 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.72 7.87 -2.38 -0.02 0.70 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.82 7.79 -2.38 -0.02 0.80 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.11 1.22 8.04 -2.38 -0.02 1.20 16 35 H 0.10 1.32 7.30 -2.39 -0.02 1.30 16 36 H 0.10 1.95 7.01 -2.39 -0.02 1.93 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.37 20.60 7.66 -92.71 -0.71 19.89 16 43 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.12 1.83 6.15 -2.38 -0.01 1.82 16 Total: -1.00 -73.85 385.79 0.87 -72.98 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.30 Total: 24.25 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.75 Total: 8.98 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -5.91 Total: -130.31 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.98 Total: -26.41 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.31 Total: 3.35 kcal Total: -73.85 0.87 -72.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264188874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.579 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds