Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.45286 * 2 1 4 4 C 1.53034 * 109.46156 * 240.03110 * 2 1 3 5 5 C 1.53118 * 109.27899 * 180.80612 * 4 2 1 6 6 H 1.08999 * 109.57938 * 177.58771 * 5 4 2 7 7 N 1.46498 * 109.52220 * 297.74359 * 5 4 2 8 8 C 1.34772 * 120.00302 * 204.68178 * 7 5 4 9 9 O 1.21285 * 120.00164 * 0.02562 * 8 7 5 10 10 C 1.50704 * 120.00198 * 179.97438 * 8 7 5 11 11 S 1.80998 * 109.47168 * 180.02562 * 10 8 7 12 12 C 1.76199 * 99.99912 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00438 * 359.97438 * 12 11 10 14 14 C 1.38801 * 119.99920 * 180.02562 * 12 11 10 15 15 N 1.31627 * 119.99935 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47030 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47268 * 119.99602 * 16 14 12 19 19 H 1.48493 * 109.47174 * 240.00174 * 16 14 12 20 20 C 1.53120 * 109.16364 * 57.64621 * 5 4 2 21 21 C 1.53032 * 109.27931 * 302.35161 * 20 5 4 22 22 N 1.46845 * 109.46299 * 119.97439 * 2 1 3 23 23 C 1.46900 * 110.99968 * 305.85069 * 22 2 1 24 24 C 1.50700 * 109.46975 * 173.47507 * 23 22 2 25 25 C 1.41373 * 126.80242 * 94.71917 * 24 23 22 26 26 C 1.35455 * 103.98672 * 179.88712 * 25 24 23 27 27 O 1.34042 * 106.44291 * 0.36679 * 26 25 24 28 28 N 1.20916 * 111.56931 * 359.74501 * 27 26 25 29 29 H 1.08997 * 109.46891 * 187.74294 * 1 2 3 30 30 H 1.09001 * 109.46835 * 307.74103 * 1 2 3 31 31 H 1.08997 * 109.47326 * 67.73955 * 1 2 3 32 32 H 1.08992 * 109.50724 * 60.85851 * 4 2 1 33 33 H 1.09003 * 109.50143 * 300.74296 * 4 2 1 34 34 H 0.97009 * 119.99828 * 24.68592 * 7 5 4 35 35 H 1.08993 * 109.47228 * 300.00523 * 10 8 7 36 36 H 1.09003 * 109.47035 * 60.00404 * 10 8 7 37 37 H 0.97002 * 120.00091 * 180.02562 * 15 14 12 38 38 H 1.09008 * 109.49766 * 62.29262 * 20 5 4 39 39 H 1.08999 * 109.50215 * 182.40499 * 20 5 4 40 40 H 1.09004 * 109.45922 * 179.19509 * 21 20 5 41 41 H 1.09000 * 109.46011 * 299.15710 * 21 20 5 42 42 H 1.08996 * 109.47516 * 293.47875 * 23 22 2 43 43 H 1.09002 * 109.46895 * 53.47488 * 23 22 2 44 44 H 1.08003 * 128.00674 * 0.02562 * 25 24 23 45 45 H 1.07998 * 126.77956 * 180.09094 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7360 -1.2356 6 1 3.9389 -1.2856 -2.1020 7 7 4.0746 0.6391 -1.2782 8 6 5.3065 0.8908 -1.7633 9 8 5.9980 -0.0209 -2.1652 10 6 5.8243 2.3054 -1.8076 11 16 7.4939 2.3151 -2.5064 12 6 7.8430 4.0409 -2.4410 13 1 7.1064 4.7264 -2.0486 14 6 9.0642 4.5197 -2.8949 15 7 9.9617 3.6844 -3.3737 16 14 9.4340 6.3494 -2.8263 17 1 8.2693 7.0685 -2.2503 18 1 10.6293 6.5813 -1.9762 19 1 9.6969 6.8531 -4.1982 20 6 4.0548 -1.4187 0.0467 21 6 3.4865 -0.6776 1.2590 22 7 2.0193 -0.6917 1.1994 23 6 1.4374 -0.1105 2.4165 24 6 1.8335 -0.9421 3.6092 25 6 2.9301 -0.7165 4.4724 26 6 2.8512 -1.7256 5.3726 27 8 1.7875 -2.4629 5.0238 28 7 1.2368 -2.0137 4.0455 29 1 -0.3633 -1.0183 0.1385 30 1 -0.3633 0.6290 0.8127 31 1 -0.3634 0.3893 -0.9510 32 1 1.6894 -0.1981 -2.1399 33 1 1.6659 -1.7446 -1.2577 34 1 3.5213 1.3684 -0.9570 35 1 5.1672 2.9136 -2.4290 36 1 5.8505 2.7145 -0.7976 37 1 10.8153 4.0189 -3.6906 38 1 3.7125 -2.4535 0.0594 39 1 5.1439 -1.3945 0.0830 40 1 3.8176 -1.1698 2.1735 41 1 3.8404 0.3533 1.2531 42 1 1.8054 0.9074 2.5450 43 1 0.3510 -0.0956 2.3285 44 1 3.6603 0.0780 4.4263 45 1 3.5168 -1.9037 6.2042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274597445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = 29.386319 kcal Electronic energy + Delta-G solvation = -27095.523503 eV Core-core repulsion = 23242.640875 eV Total energy + Delta-G solvation = -3852.882628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.21914 -40.37948 -38.57929 -35.68989 -34.09737 -32.56389 -32.45124 -32.08186 -31.57585 -29.01969 -27.51429 -26.87023 -25.50046 -23.67704 -23.42590 -21.84875 -21.13182 -20.88500 -19.08121 -18.07154 -17.90101 -17.83868 -16.47896 -16.18110 -16.01416 -15.92965 -15.18796 -14.86760 -14.82640 -14.49738 -14.17917 -14.09465 -13.83294 -13.45794 -13.23930 -13.01560 -12.83365 -12.55480 -12.41024 -12.30727 -12.13019 -11.94537 -11.72249 -11.43432 -11.27336 -11.09348 -11.04037 -10.83093 -10.77988 -10.61994 -10.29641 -9.91904 -9.82209 -9.38670 -9.09939 -8.91607 -8.61229 -8.25078 -6.51964 -6.23946 -3.94355 1.21810 1.87147 2.97332 3.02765 3.09135 3.19499 3.26515 3.31114 3.54822 3.72657 3.83421 4.18212 4.24536 4.43650 4.50454 4.69002 4.82151 4.90443 4.91672 4.97031 5.03295 5.11304 5.14080 5.20101 5.21143 5.31497 5.34571 5.43050 5.43417 5.55935 5.62280 5.67083 5.69567 5.76624 5.80884 5.86857 5.97077 6.02185 6.09880 6.11261 6.66629 6.70373 6.78751 7.57577 7.70371 7.99225 8.33134 8.61708 9.21534 10.83512 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.002361 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.459616 B =11857.631344 C =12580.793133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 H 0.043 0.957 4 C -0.117 4.117 5 C 0.145 3.855 6 H 0.091 0.909 7 N -0.734 5.734 8 C 0.532 3.468 9 O -0.516 6.516 10 C -0.153 4.153 11 S -0.059 6.059 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.126 4.126 21 C 0.056 3.944 22 N -0.526 5.526 23 C 0.128 3.872 24 C 0.024 3.976 25 C -0.232 4.232 26 C -0.060 4.060 27 O 0.098 5.902 28 N -0.348 5.348 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.393 0.607 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.170 0.830 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.062 -8.431 15.020 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 H 0.061 0.939 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.109 0.891 7 N -0.389 5.389 8 C 0.318 3.682 9 O -0.390 6.390 10 C -0.304 4.304 11 S 0.167 5.833 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.165 4.165 21 C -0.071 4.071 22 N -0.252 5.252 23 C 0.000 4.000 24 C -0.135 4.135 25 C -0.254 4.254 26 C -0.141 4.141 27 O 0.031 5.969 28 N -0.051 5.051 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.228 0.772 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.188 0.812 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -19.959 -11.162 13.820 26.719 hybrid contribution 0.322 4.074 0.957 4.197 sum -19.637 -7.089 14.777 25.578 Atomic orbital electron populations 1.21944 0.93989 1.02875 1.01962 1.21611 0.95551 0.95435 0.89973 0.93910 1.21929 0.94307 1.02565 0.96715 1.20916 0.92950 0.83399 0.98758 0.89088 1.46170 1.17466 1.08737 1.66534 1.20294 0.80689 0.90991 0.76178 1.90700 1.56194 1.46445 1.45671 1.23532 1.06286 0.95330 1.05271 1.85403 1.06552 1.10800 1.80537 1.22901 1.04347 0.92387 1.48686 0.90949 1.24996 0.95120 0.98966 0.94538 1.70025 1.06691 1.34528 1.39005 0.86120 0.78377 0.83017 0.77998 1.19646 1.20556 1.20547 1.21962 1.01241 0.99743 0.93559 1.22116 0.86168 0.99562 0.99301 1.61966 1.07801 1.54784 1.00676 1.20390 1.01085 0.93516 0.85030 1.23422 0.94975 0.95472 0.99673 1.22818 1.01851 1.03364 0.97350 1.26024 0.92880 0.93031 1.02186 1.84863 1.33197 1.44858 1.34001 1.73857 1.19694 1.11840 0.99739 0.91339 0.92606 0.91689 0.90498 0.89513 0.77240 0.89363 0.89488 0.92224 0.90488 0.90458 0.90739 0.94319 0.92527 0.88464 0.81238 0.76749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.50 37.16 0.32 -0.70 16 2 C 0.08 0.67 2.28 -67.73 -0.15 0.51 16 3 H 0.04 0.34 6.64 -51.93 -0.34 0.00 16 4 C -0.12 -1.02 5.03 -26.65 -0.13 -1.16 16 5 C 0.14 1.68 2.80 -67.81 -0.19 1.49 16 6 H 0.09 1.24 7.58 -51.93 -0.39 0.84 16 7 N -0.73 -9.49 4.35 -53.69 -0.23 -9.72 16 8 C 0.53 9.66 7.81 -10.99 -0.09 9.57 16 9 O -0.52 -11.44 15.53 5.55 0.09 -11.35 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.82 16 11 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 12 C -0.53 -15.13 9.50 30.94 0.29 -14.84 16 13 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 16 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.13 -1.46 5.76 -26.65 -0.15 -1.61 16 21 C 0.06 0.57 5.12 -3.84 -0.02 0.55 16 22 N -0.53 -4.83 4.51 -228.13 -1.03 -5.86 16 23 C 0.13 1.08 5.22 -4.98 -0.03 1.05 16 24 C 0.02 0.23 5.89 -82.10 -0.48 -0.25 16 25 C -0.23 -1.75 9.96 -39.38 -0.39 -2.14 16 26 C -0.06 -0.38 12.30 29.74 0.37 -0.01 16 27 O 0.10 0.91 11.20 17.17 0.19 1.10 16 28 N -0.35 -3.83 12.07 33.42 0.40 -3.42 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.34 6.66 -51.93 -0.35 0.00 16 31 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.39 4.16 7.01 -40.82 -0.29 3.87 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.78 6.10 -51.93 -0.32 0.46 16 41 H 0.04 0.41 7.69 -51.93 -0.40 0.01 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.78 6.01 -51.93 -0.31 0.47 16 44 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.22 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -34.98 377.33 -8.53 -43.51 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.59 Total: 1.30 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.54 Total: -8.37 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.13 Total: -44.30 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.28 Total: -10.25 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.98 -8.53 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274597445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.897 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds