Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.45286 * 2 1 4 4 C 1.53034 * 109.46156 * 240.03110 * 2 1 3 5 5 C 1.53118 * 109.27899 * 180.80612 * 4 2 1 6 6 H 1.08999 * 109.57938 * 177.58771 * 5 4 2 7 7 N 1.46498 * 109.52220 * 297.74359 * 5 4 2 8 8 C 1.34772 * 120.00302 * 204.68178 * 7 5 4 9 9 O 1.21285 * 120.00164 * 0.02562 * 8 7 5 10 10 C 1.50704 * 120.00198 * 179.97438 * 8 7 5 11 11 S 1.80998 * 109.47168 * 180.02562 * 10 8 7 12 12 C 1.76199 * 99.99912 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00438 * 359.97438 * 12 11 10 14 14 C 1.38801 * 119.99920 * 180.02562 * 12 11 10 15 15 N 1.31627 * 119.99935 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47030 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47268 * 119.99602 * 16 14 12 19 19 H 1.48493 * 109.47174 * 240.00174 * 16 14 12 20 20 C 1.53120 * 109.16364 * 57.64621 * 5 4 2 21 21 C 1.53032 * 109.27931 * 302.35161 * 20 5 4 22 22 N 1.46845 * 109.46299 * 119.97439 * 2 1 3 23 23 C 1.46900 * 110.99968 * 305.85069 * 22 2 1 24 24 C 1.50700 * 109.46975 * 173.47507 * 23 22 2 25 25 C 1.41373 * 126.80242 * 94.71917 * 24 23 22 26 26 C 1.35455 * 103.98672 * 179.88712 * 25 24 23 27 27 O 1.34042 * 106.44291 * 0.36679 * 26 25 24 28 28 N 1.20916 * 111.56931 * 359.74501 * 27 26 25 29 29 H 1.08997 * 109.46891 * 187.74294 * 1 2 3 30 30 H 1.09001 * 109.46835 * 307.74103 * 1 2 3 31 31 H 1.08997 * 109.47326 * 67.73955 * 1 2 3 32 32 H 1.08992 * 109.50724 * 60.85851 * 4 2 1 33 33 H 1.09003 * 109.50143 * 300.74296 * 4 2 1 34 34 H 0.97009 * 119.99828 * 24.68592 * 7 5 4 35 35 H 1.08993 * 109.47228 * 300.00523 * 10 8 7 36 36 H 1.09003 * 109.47035 * 60.00404 * 10 8 7 37 37 H 0.97002 * 120.00091 * 180.02562 * 15 14 12 38 38 H 1.09008 * 109.49766 * 62.29262 * 20 5 4 39 39 H 1.08999 * 109.50215 * 182.40499 * 20 5 4 40 40 H 1.09004 * 109.45922 * 179.19509 * 21 20 5 41 41 H 1.09000 * 109.46011 * 299.15710 * 21 20 5 42 42 H 1.08996 * 109.47516 * 293.47875 * 23 22 2 43 43 H 1.09002 * 109.46895 * 53.47488 * 23 22 2 44 44 H 1.08003 * 128.00674 * 0.02562 * 25 24 23 45 45 H 1.07998 * 126.77956 * 180.09094 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7360 -1.2356 6 1 3.9389 -1.2856 -2.1020 7 7 4.0746 0.6391 -1.2782 8 6 5.3065 0.8908 -1.7633 9 8 5.9980 -0.0209 -2.1652 10 6 5.8243 2.3054 -1.8076 11 16 7.4939 2.3151 -2.5064 12 6 7.8430 4.0409 -2.4410 13 1 7.1064 4.7264 -2.0486 14 6 9.0642 4.5197 -2.8949 15 7 9.9617 3.6844 -3.3737 16 14 9.4340 6.3494 -2.8263 17 1 8.2693 7.0685 -2.2503 18 1 10.6293 6.5813 -1.9762 19 1 9.6969 6.8531 -4.1982 20 6 4.0548 -1.4187 0.0467 21 6 3.4865 -0.6776 1.2590 22 7 2.0193 -0.6917 1.1994 23 6 1.4374 -0.1105 2.4165 24 6 1.8335 -0.9421 3.6092 25 6 2.9301 -0.7165 4.4724 26 6 2.8512 -1.7256 5.3726 27 8 1.7875 -2.4629 5.0238 28 7 1.2368 -2.0137 4.0455 29 1 -0.3633 -1.0183 0.1385 30 1 -0.3633 0.6290 0.8127 31 1 -0.3634 0.3893 -0.9510 32 1 1.6894 -0.1981 -2.1399 33 1 1.6659 -1.7446 -1.2577 34 1 3.5213 1.3684 -0.9570 35 1 5.1672 2.9136 -2.4290 36 1 5.8505 2.7145 -0.7976 37 1 10.8153 4.0189 -3.6906 38 1 3.7125 -2.4535 0.0594 39 1 5.1439 -1.3945 0.0830 40 1 3.8176 -1.1698 2.1735 41 1 3.8404 0.3533 1.2531 42 1 1.8054 0.9074 2.5450 43 1 0.3510 -0.0956 2.3285 44 1 3.6603 0.0780 4.4263 45 1 3.5168 -1.9037 6.2042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274597445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = 4.661604 kcal Electronic energy + Delta-G solvation = -27096.595647 eV Core-core repulsion = 23242.640875 eV Total energy + Delta-G solvation = -3853.954772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.85472 -41.40196 -39.77548 -36.62348 -34.93201 -34.58802 -33.37517 -32.89522 -32.44865 -30.39794 -28.34350 -27.68077 -27.54704 -24.48493 -24.04377 -22.70700 -22.20529 -21.64539 -20.07799 -19.87057 -18.66245 -18.51483 -17.91147 -17.17055 -16.95582 -16.88534 -16.67124 -16.46321 -15.93287 -15.56092 -15.31530 -15.00891 -14.76231 -14.63623 -14.45002 -14.08990 -13.84367 -13.63582 -13.39312 -13.16463 -13.05535 -12.95674 -12.91259 -12.78289 -12.65068 -12.50661 -12.17490 -11.96735 -11.71751 -11.68157 -11.39192 -11.16370 -10.97858 -10.92221 -10.51918 -10.27207 -10.11553 -9.33914 -8.66849 -8.35247 -6.13037 0.65836 1.26073 1.27087 1.40978 1.47056 1.57876 1.62528 2.25124 2.29690 2.48783 2.87369 2.99056 3.22270 3.31696 3.64491 3.66941 3.76160 3.92277 3.96660 4.08432 4.23529 4.28459 4.30010 4.34090 4.40182 4.44394 4.46943 4.49443 4.66040 4.74269 4.75727 4.79089 4.88721 4.92671 4.98470 5.04695 5.12570 5.14745 5.17081 5.37559 5.41632 5.53437 5.97558 6.07859 6.19549 6.49335 7.06289 7.25228 7.39449 8.74165 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.002361 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.459616 B =11857.631344 C =12580.793133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.050 0.950 4 C -0.107 4.107 5 C 0.145 3.855 6 H 0.070 0.930 7 N -0.706 5.706 8 C 0.536 3.464 9 O -0.563 6.563 10 C -0.129 4.129 11 S -0.150 6.150 12 C -0.544 4.544 13 H 0.082 0.918 14 C 0.012 3.988 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.256 1.256 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.122 4.122 21 C 0.066 3.934 22 N -0.532 5.532 23 C 0.129 3.871 24 C 0.013 3.987 25 C -0.247 4.247 26 C -0.045 4.045 27 O 0.084 5.916 28 N -0.384 5.384 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.410 0.590 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.271 0.729 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.184 0.816 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.896 -6.608 16.386 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.068 0.932 4 C -0.145 4.145 5 C 0.040 3.960 6 H 0.088 0.912 7 N -0.361 5.361 8 C 0.322 3.678 9 O -0.441 6.441 10 C -0.280 4.280 11 S 0.077 5.923 12 C -0.692 4.692 13 H 0.100 0.900 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.820 3.180 17 H -0.180 1.180 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.160 4.160 21 C -0.062 4.062 22 N -0.258 5.258 23 C 0.001 3.999 24 C -0.147 4.147 25 C -0.269 4.269 26 C -0.126 4.126 27 O 0.019 5.981 28 N -0.089 5.089 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.247 0.753 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.202 0.798 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -21.856 -9.339 15.220 28.223 hybrid contribution 0.811 3.409 0.606 3.556 sum -21.045 -5.931 15.826 26.991 Atomic orbital electron populations 1.21900 0.92624 1.02685 1.03017 1.21674 0.96574 0.95383 0.88961 0.93198 1.21888 0.91468 1.03332 0.97860 1.21013 0.95035 0.81999 0.97940 0.91224 1.45895 1.15641 1.10103 1.64452 1.20038 0.81811 0.89726 0.76259 1.90694 1.57858 1.47368 1.48152 1.23367 1.01619 0.97087 1.05962 1.85595 1.12880 1.11841 1.81995 1.23224 1.04917 0.92413 1.48668 0.89964 1.26130 0.94803 1.04475 0.93809 1.70188 1.07315 1.37140 1.40154 0.84907 0.78621 0.76202 0.78226 1.17992 1.19932 1.19992 1.21867 0.99552 1.00303 0.94327 1.21953 0.87055 0.98987 0.98206 1.61928 1.06860 1.55550 1.01507 1.20441 1.01303 0.93849 0.84302 1.23742 0.95477 0.95294 1.00155 1.23088 1.01916 1.04387 0.97481 1.26799 0.91799 0.91660 1.02358 1.84814 1.34104 1.45381 1.33780 1.73851 1.21162 1.12989 1.00918 0.92144 0.91763 0.90470 0.89172 0.89081 0.75283 0.87364 0.87474 0.92007 0.90188 0.93222 0.91046 0.94517 0.91286 0.88036 0.79821 0.72789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.50 71.98 0.61 -0.95 16 2 C 0.08 1.11 2.28 44.94 0.10 1.22 16 3 H 0.05 0.63 6.64 -2.39 -0.02 0.61 16 4 C -0.11 -1.66 5.03 30.65 0.15 -1.50 16 5 C 0.14 3.25 2.80 45.07 0.13 3.38 16 6 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 7 N -0.71 -17.25 4.35 -442.16 -1.92 -19.17 16 8 C 0.54 19.27 7.81 87.66 0.68 19.95 16 9 O -0.56 -25.67 15.53 -3.05 -0.05 -25.71 16 10 C -0.13 -5.00 6.16 71.24 0.44 -4.57 16 11 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 12 C -0.54 -30.77 9.50 67.95 0.65 -30.13 16 13 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 14 C 0.01 0.71 5.49 84.86 0.47 1.17 16 15 N -0.91 -55.74 13.22 21.65 0.29 -55.45 16 16 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.12 -2.79 5.76 30.65 0.18 -2.62 16 21 C 0.07 1.27 5.12 86.32 0.44 1.71 16 22 N -0.53 -8.82 4.51 -875.66 -3.95 -12.77 16 23 C 0.13 1.94 5.22 85.56 0.45 2.38 16 24 C 0.01 0.22 5.89 43.58 0.26 0.48 16 25 C -0.25 -3.29 9.96 22.40 0.22 -3.07 16 26 C -0.05 -0.48 12.30 67.18 0.83 0.34 16 27 O 0.08 1.49 11.20 71.62 0.80 2.29 16 28 N -0.38 -8.19 12.07 -49.56 -0.60 -8.79 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.60 6.66 -2.39 -0.02 0.59 16 31 H 0.08 0.66 8.13 -2.39 -0.02 0.64 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.41 7.50 7.01 -92.70 -0.65 6.85 16 35 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 36 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.43 6.10 -2.39 -0.01 1.42 16 41 H 0.04 0.72 7.69 -2.39 -0.02 0.70 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 1.43 6.01 -2.39 -0.01 1.42 16 44 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.26 0.23 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -78.92 377.33 1.40 -77.52 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.36 Total: 18.52 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 5.60 Total: -12.20 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -6.18 Total: -96.19 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.75 Total: -23.43 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -78.92 1.40 -77.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274597445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.184 kcal (2) G-P(sol) polarization free energy of solvation -78.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds