Wall clock time and date at job start Sat Apr 11 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46536 * 2 1 4 4 C 1.53040 * 109.46300 * 119.97080 * 2 1 3 5 5 C 1.53118 * 109.28074 * 179.19218 * 4 2 1 6 6 H 1.09008 * 109.52049 * 62.25005 * 5 4 2 7 7 N 1.46501 * 109.52167 * 182.43593 * 5 4 2 8 8 C 1.34774 * 119.99481 * 204.99562 * 7 5 4 9 9 O 1.21279 * 120.00582 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99382 * 180.02562 * 8 7 5 11 11 S 1.81004 * 109.47070 * 180.02562 * 10 8 7 12 12 C 1.76200 * 100.00189 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99530 * 359.97438 * 12 11 10 14 14 C 1.38793 * 119.99953 * 180.02562 * 12 11 10 15 15 N 1.31632 * 120.00484 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99900 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47063 * 90.00036 * 16 14 12 18 18 H 1.48497 * 109.47422 * 209.99921 * 16 14 12 19 19 H 1.48496 * 109.47433 * 330.00023 * 16 14 12 20 20 C 1.53120 * 109.15996 * 302.34335 * 5 4 2 21 21 C 1.53041 * 109.27783 * 57.65552 * 20 5 4 22 22 N 1.46851 * 109.52056 * 300.81769 * 21 20 5 23 23 C 1.46897 * 110.99988 * 185.83872 * 22 21 20 24 24 C 1.50708 * 109.46932 * 45.79214 * 23 22 21 25 25 C 1.41378 * 126.80201 * 94.98563 * 24 23 22 26 26 C 1.35451 * 103.98546 * 180.02562 * 25 24 23 27 27 O 1.34034 * 106.44611 * 359.97438 * 26 25 24 28 28 N 1.20923 * 111.56833 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47481 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46940 * 299.98008 * 1 2 3 31 31 H 1.08998 * 109.46892 * 59.97471 * 1 2 3 32 32 H 1.09003 * 109.49811 * 299.13613 * 4 2 1 33 33 H 1.08999 * 109.50457 * 59.24629 * 4 2 1 34 34 H 0.96995 * 119.99629 * 25.00422 * 7 5 4 35 35 H 1.08997 * 109.47793 * 300.00707 * 10 8 7 36 36 H 1.09000 * 109.47056 * 60.00698 * 10 8 7 37 37 H 0.96993 * 120.00311 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.50064 * 177.59591 * 20 5 4 39 39 H 1.08998 * 109.50077 * 297.67627 * 20 5 4 40 40 H 1.08992 * 109.46229 * 180.80670 * 21 20 5 41 41 H 1.09002 * 109.46622 * 60.83475 * 21 20 5 42 42 H 1.09009 * 109.47504 * 285.79400 * 23 22 21 43 43 H 1.09003 * 109.47725 * 165.79024 * 23 22 21 44 44 H 1.08005 * 128.00578 * 359.97438 * 25 24 23 45 45 H 1.08002 * 126.77249 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5710 -0.7361 1.2356 6 1 3.9457 0.2871 1.2672 7 7 4.0641 -1.4755 2.4002 8 6 5.2936 -1.2198 2.8895 9 8 5.9916 -0.3774 2.3660 10 6 5.8011 -1.9809 4.0871 11 16 7.4698 -1.4138 4.4996 12 6 7.8065 -2.4401 5.8917 13 1 7.0653 -3.1480 6.2324 14 6 9.0236 -2.3381 6.5509 15 7 9.9263 -1.4743 6.1365 16 14 9.3802 -3.4257 8.0272 17 1 10.0157 -4.6877 7.5703 18 1 10.2983 -2.7166 8.9542 19 1 8.1102 -3.7375 8.7307 20 6 4.0547 -1.4190 -0.0466 21 6 3.4865 -0.6779 -1.2591 22 7 2.0192 -0.6920 -1.1993 23 6 1.4372 -0.1108 -2.4165 24 6 2.1389 -0.6723 -3.6263 25 6 1.7267 -1.7755 -4.4085 26 6 2.6825 -1.8755 -5.3629 27 8 3.5623 -0.8931 -5.1233 28 7 3.2442 -0.2371 -4.1586 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5136 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 1.6895 -0.1980 2.1399 33 1 1.6658 -1.7446 1.2578 34 1 3.5058 -2.1491 2.8190 35 1 5.1388 -1.8075 4.9353 36 1 5.8255 -3.0461 3.8571 37 1 10.7767 -1.4028 6.5975 38 1 5.1438 -1.3949 -0.0830 39 1 3.7129 -2.4539 -0.0589 40 1 3.8174 -1.1702 -2.1734 41 1 3.8404 0.3530 -1.2533 42 1 1.5587 0.9723 -2.3961 43 1 0.3764 -0.3566 -2.4652 44 1 0.8524 -2.3955 -4.2752 45 1 2.7270 -2.6033 -6.1597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274597447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:47 Heat of formation + Delta-G solvation = 29.915926 kcal Electronic energy + Delta-G solvation = -26652.271438 eV Core-core repulsion = 22799.411775 eV Total energy + Delta-G solvation = -3852.859663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.29549 -40.13702 -38.72316 -35.70890 -34.26278 -32.66714 -32.41579 -32.07837 -31.51301 -29.12189 -27.41295 -26.72742 -25.46233 -23.87005 -23.06932 -21.99879 -21.12365 -20.31717 -19.85192 -18.06350 -17.96990 -17.80436 -16.43893 -16.26554 -15.92669 -15.74909 -15.34926 -14.90474 -14.79203 -14.34918 -14.29244 -14.07127 -13.72253 -13.62163 -13.15321 -12.98153 -12.71465 -12.57473 -12.50062 -12.32761 -12.08432 -11.88879 -11.71279 -11.33314 -11.21113 -11.05431 -11.01334 -10.91277 -10.78964 -10.69774 -10.43174 -9.97184 -9.79700 -9.34091 -9.05635 -8.83161 -8.65694 -8.21548 -6.48244 -6.20212 -3.90639 1.16176 1.82853 2.93196 3.04954 3.12821 3.23271 3.28815 3.33027 3.51918 3.72574 3.81799 4.13983 4.21810 4.45935 4.59634 4.68651 4.78321 4.89505 4.93682 4.99966 5.04756 5.11423 5.14826 5.19709 5.25201 5.28126 5.33954 5.38502 5.46436 5.54699 5.59062 5.65579 5.69093 5.74704 5.82237 5.88893 5.92609 6.06039 6.16137 6.22694 6.65253 6.71252 6.75691 7.60865 7.76528 7.92241 8.36616 8.65899 9.24989 10.87213 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020734 B = 0.002024 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.109279 B =13830.766884 C =14658.846062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.086 3.914 3 H 0.047 0.953 4 C -0.116 4.116 5 C 0.146 3.854 6 H 0.084 0.916 7 N -0.734 5.734 8 C 0.532 3.468 9 O -0.517 6.517 10 C -0.153 4.153 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.125 4.125 21 C 0.059 3.941 22 N -0.527 5.527 23 C 0.132 3.868 24 C 0.018 3.982 25 C -0.219 4.219 26 C -0.062 4.062 27 O 0.102 5.898 28 N -0.359 5.359 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.101 0.899 44 H 0.172 0.828 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.838 -1.300 -20.592 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 H 0.065 0.935 4 C -0.155 4.155 5 C 0.041 3.959 6 H 0.102 0.898 7 N -0.387 5.387 8 C 0.318 3.682 9 O -0.392 6.392 10 C -0.304 4.304 11 S 0.166 5.834 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.164 4.164 21 C -0.069 4.069 22 N -0.253 5.253 23 C 0.004 3.996 24 C -0.141 4.141 25 C -0.241 4.241 26 C -0.144 4.144 27 O 0.034 5.966 28 N -0.063 5.063 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.189 0.811 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -21.791 0.734 -21.093 30.336 hybrid contribution -1.216 -1.918 1.571 2.762 sum -23.007 -1.184 -19.521 30.196 Atomic orbital electron populations 1.21916 0.93789 1.02845 1.02015 1.21588 0.95572 0.95678 0.89427 0.93527 1.21898 0.94410 1.02146 0.97018 1.20905 0.93023 0.96872 0.85101 0.89790 1.46048 1.17671 1.42651 1.32357 1.20320 0.80654 0.82810 0.84382 1.90699 1.55698 1.32872 1.59886 1.23532 1.06249 1.02867 0.97732 1.85405 1.06911 1.52425 1.38685 1.22867 1.04471 1.25010 1.15970 0.90944 1.24996 0.95098 0.95779 0.97766 1.70018 1.06662 1.33704 1.39916 0.86166 0.78322 0.79900 0.81095 1.20272 1.20763 1.19706 1.21985 1.01272 1.00059 0.93114 1.22115 0.86133 0.99627 0.99052 1.62155 1.08010 1.54433 1.00749 1.20462 0.98105 0.96734 0.84313 1.23487 0.93940 0.96767 0.99921 1.22711 1.03549 1.00815 0.97010 1.26052 0.90741 0.95194 1.02393 1.84862 1.42929 1.33196 1.35598 1.73953 1.15573 1.17073 0.99654 0.91434 0.91759 0.92464 0.90551 0.90335 0.76870 0.89277 0.89263 0.92196 0.90561 0.91018 0.90557 0.94305 0.92958 0.88140 0.81055 0.76720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.78 37.16 0.33 -0.57 16 2 C 0.09 0.72 2.40 -67.72 -0.16 0.56 16 3 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -1.04 4.85 -26.65 -0.13 -1.17 16 5 C 0.15 1.82 2.52 -67.81 -0.17 1.65 16 6 H 0.08 1.25 7.58 -51.92 -0.39 0.86 16 7 N -0.73 -10.04 5.08 -53.68 -0.27 -10.31 16 8 C 0.53 10.10 7.82 -10.99 -0.09 10.01 16 9 O -0.52 -11.96 15.52 5.56 0.09 -11.87 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 12 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 13 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 16 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.13 -1.58 5.67 -26.65 -0.15 -1.73 16 21 C 0.06 0.68 4.90 -3.83 -0.02 0.66 16 22 N -0.53 -4.87 4.64 -228.11 -1.06 -5.92 16 23 C 0.13 1.06 4.96 -4.97 -0.02 1.04 16 24 C 0.02 0.16 5.28 -82.10 -0.43 -0.27 16 25 C -0.22 -1.44 11.12 -39.38 -0.44 -1.88 16 26 C -0.06 -0.36 12.30 29.74 0.37 0.01 16 27 O 0.10 0.94 11.20 17.19 0.19 1.13 16 28 N -0.36 -3.94 10.82 33.42 0.36 -3.58 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.30 6.55 -51.93 -0.34 -0.04 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.40 4.25 8.61 -40.82 -0.35 3.90 16 35 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.95 5.80 -51.93 -0.30 0.65 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.45 8.08 -51.92 -0.42 0.03 16 43 H 0.10 0.60 6.84 -51.93 -0.36 0.24 16 44 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 45 H 0.22 0.28 8.06 -52.49 -0.42 -0.14 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -35.94 380.79 -8.74 -44.67 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.78 Total: 0.86 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.50 Total: -7.70 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.23 Total: -45.50 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.28 Total: -10.74 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.94 -8.74 -44.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274597447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.590 kcal (2) G-P(sol) polarization free energy of solvation -35.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds