Wall clock time and date at job start Sat Apr 11 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46536 * 2 1 4 4 C 1.53040 * 109.46300 * 119.97080 * 2 1 3 5 5 C 1.53118 * 109.28074 * 179.19218 * 4 2 1 6 6 H 1.09008 * 109.52049 * 62.25005 * 5 4 2 7 7 N 1.46501 * 109.52167 * 182.43593 * 5 4 2 8 8 C 1.34774 * 119.99481 * 204.99562 * 7 5 4 9 9 O 1.21279 * 120.00582 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99382 * 180.02562 * 8 7 5 11 11 S 1.81004 * 109.47070 * 180.02562 * 10 8 7 12 12 C 1.76200 * 100.00189 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99530 * 359.97438 * 12 11 10 14 14 C 1.38793 * 119.99953 * 180.02562 * 12 11 10 15 15 N 1.31632 * 120.00484 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99900 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47063 * 90.00036 * 16 14 12 18 18 H 1.48497 * 109.47422 * 209.99921 * 16 14 12 19 19 H 1.48496 * 109.47433 * 330.00023 * 16 14 12 20 20 C 1.53120 * 109.15996 * 302.34335 * 5 4 2 21 21 C 1.53041 * 109.27783 * 57.65552 * 20 5 4 22 22 N 1.46851 * 109.52056 * 300.81769 * 21 20 5 23 23 C 1.46897 * 110.99988 * 185.83872 * 22 21 20 24 24 C 1.50708 * 109.46932 * 45.79214 * 23 22 21 25 25 C 1.41378 * 126.80201 * 94.98563 * 24 23 22 26 26 C 1.35451 * 103.98546 * 180.02562 * 25 24 23 27 27 O 1.34034 * 106.44611 * 359.97438 * 26 25 24 28 28 N 1.20923 * 111.56833 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47481 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46940 * 299.98008 * 1 2 3 31 31 H 1.08998 * 109.46892 * 59.97471 * 1 2 3 32 32 H 1.09003 * 109.49811 * 299.13613 * 4 2 1 33 33 H 1.08999 * 109.50457 * 59.24629 * 4 2 1 34 34 H 0.96995 * 119.99629 * 25.00422 * 7 5 4 35 35 H 1.08997 * 109.47793 * 300.00707 * 10 8 7 36 36 H 1.09000 * 109.47056 * 60.00698 * 10 8 7 37 37 H 0.96993 * 120.00311 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.50064 * 177.59591 * 20 5 4 39 39 H 1.08998 * 109.50077 * 297.67627 * 20 5 4 40 40 H 1.08992 * 109.46229 * 180.80670 * 21 20 5 41 41 H 1.09002 * 109.46622 * 60.83475 * 21 20 5 42 42 H 1.09009 * 109.47504 * 285.79400 * 23 22 21 43 43 H 1.09003 * 109.47725 * 165.79024 * 23 22 21 44 44 H 1.08005 * 128.00578 * 359.97438 * 25 24 23 45 45 H 1.08002 * 126.77249 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5710 -0.7361 1.2356 6 1 3.9457 0.2871 1.2672 7 7 4.0641 -1.4755 2.4002 8 6 5.2936 -1.2198 2.8895 9 8 5.9916 -0.3774 2.3660 10 6 5.8011 -1.9809 4.0871 11 16 7.4698 -1.4138 4.4996 12 6 7.8065 -2.4401 5.8917 13 1 7.0653 -3.1480 6.2324 14 6 9.0236 -2.3381 6.5509 15 7 9.9263 -1.4743 6.1365 16 14 9.3802 -3.4257 8.0272 17 1 10.0157 -4.6877 7.5703 18 1 10.2983 -2.7166 8.9542 19 1 8.1102 -3.7375 8.7307 20 6 4.0547 -1.4190 -0.0466 21 6 3.4865 -0.6779 -1.2591 22 7 2.0192 -0.6920 -1.1993 23 6 1.4372 -0.1108 -2.4165 24 6 2.1389 -0.6723 -3.6263 25 6 1.7267 -1.7755 -4.4085 26 6 2.6825 -1.8755 -5.3629 27 8 3.5623 -0.8931 -5.1233 28 7 3.2442 -0.2371 -4.1586 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5136 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 1.6895 -0.1980 2.1399 33 1 1.6658 -1.7446 1.2578 34 1 3.5058 -2.1491 2.8190 35 1 5.1388 -1.8075 4.9353 36 1 5.8255 -3.0461 3.8571 37 1 10.7767 -1.4028 6.5975 38 1 5.1438 -1.3949 -0.0830 39 1 3.7129 -2.4539 -0.0589 40 1 3.8174 -1.1702 -2.1734 41 1 3.8404 0.3530 -1.2533 42 1 1.5587 0.9723 -2.3961 43 1 0.3764 -0.3566 -2.4652 44 1 0.8524 -2.3955 -4.2752 45 1 2.7270 -2.6033 -6.1597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274597447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:46 Heat of formation + Delta-G solvation = 3.422448 kcal Electronic energy + Delta-G solvation = -26653.420281 eV Core-core repulsion = 22799.411775 eV Total energy + Delta-G solvation = -3854.008506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.90958 -41.22157 -39.95103 -36.71486 -35.12146 -34.59316 -33.46176 -32.96191 -32.33577 -30.54644 -28.25122 -27.68721 -27.43763 -24.65271 -23.76778 -22.94477 -21.78679 -21.58338 -20.82887 -19.81079 -18.63956 -18.62468 -17.86363 -17.48251 -16.88948 -16.72624 -16.62169 -16.43939 -16.01806 -15.86530 -15.21905 -15.01438 -14.73693 -14.70513 -14.41790 -14.28130 -13.74750 -13.53622 -13.31664 -13.19075 -13.17554 -12.95384 -12.89160 -12.79357 -12.63762 -12.41062 -12.15092 -11.94398 -11.85440 -11.76407 -11.62037 -11.15082 -11.10172 -10.90004 -10.53256 -10.28566 -10.11584 -9.45166 -8.68382 -8.35353 -6.13978 0.63059 1.25756 1.27760 1.42193 1.46270 1.56858 1.59198 2.22880 2.27540 2.49549 2.80785 2.98695 3.21290 3.30625 3.58881 3.62621 3.74814 3.87967 3.97688 4.02153 4.20857 4.28976 4.30550 4.36188 4.37613 4.42888 4.44228 4.49775 4.54066 4.64063 4.70998 4.80125 4.87209 4.90847 5.00057 5.02285 5.08789 5.18153 5.19882 5.39886 5.40935 5.47771 5.86310 5.99571 6.19087 6.51153 7.05665 7.24332 7.36317 8.73951 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020734 B = 0.002024 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.109279 B =13830.766884 C =14658.846062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.032 0.968 4 C -0.106 4.106 5 C 0.146 3.854 6 H 0.054 0.946 7 N -0.706 5.706 8 C 0.533 3.467 9 O -0.567 6.567 10 C -0.128 4.128 11 S -0.156 6.156 12 C -0.545 4.545 13 H 0.084 0.916 14 C 0.011 3.989 15 N -0.912 5.912 16 Si 1.001 2.999 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.257 1.257 20 C -0.118 4.118 21 C 0.071 3.929 22 N -0.519 5.519 23 C 0.132 3.868 24 C 0.002 3.998 25 C -0.224 4.224 26 C -0.051 4.051 27 O 0.082 5.918 28 N -0.403 5.403 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.271 0.729 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.014 0.986 42 H 0.042 0.958 43 H 0.130 0.870 44 H 0.199 0.801 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.316 -3.811 -20.280 34.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 H 0.051 0.949 4 C -0.144 4.144 5 C 0.042 3.958 6 H 0.072 0.928 7 N -0.360 5.360 8 C 0.319 3.681 9 O -0.446 6.446 10 C -0.279 4.279 11 S 0.071 5.929 12 C -0.693 4.693 13 H 0.102 0.898 14 C -0.193 4.193 15 N -0.549 5.549 16 Si 0.822 3.178 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.181 1.181 20 C -0.157 4.157 21 C -0.058 4.058 22 N -0.246 5.246 23 C 0.004 3.996 24 C -0.156 4.156 25 C -0.246 4.246 26 C -0.132 4.132 27 O 0.017 5.983 28 N -0.110 5.110 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.255 0.745 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.033 0.967 42 H 0.060 0.940 43 H 0.148 0.852 44 H 0.216 0.784 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -25.335 -1.807 -20.801 32.830 hybrid contribution -0.235 -1.138 1.335 1.770 sum -25.570 -2.945 -19.466 32.271 Atomic orbital electron populations 1.21873 0.91144 1.03718 1.03061 1.21691 0.97526 0.94685 0.88664 0.94949 1.21873 0.90883 1.03622 0.98000 1.21001 0.95676 0.94967 0.84202 0.92773 1.45781 1.15864 1.42330 1.31993 1.20132 0.81821 0.82145 0.83952 1.90693 1.57481 1.35109 1.61276 1.23365 1.01564 1.03762 0.99190 1.85629 1.13356 1.54194 1.39682 1.23201 1.05125 1.25035 1.15901 0.89795 1.26167 0.94721 0.97250 1.01205 1.70191 1.07283 1.35713 1.41698 0.84926 0.78664 0.77614 0.76598 1.19286 1.20331 1.18053 1.21871 0.99131 1.00914 0.93788 1.21878 0.88115 0.97820 0.97984 1.62206 1.05959 1.54636 1.01753 1.20602 0.99374 0.96124 0.83465 1.23853 0.93729 0.97622 1.00366 1.23077 1.04612 1.00332 0.96573 1.26912 0.89287 0.94288 1.02728 1.84805 1.43990 1.34141 1.35373 1.73960 1.17135 1.18866 1.01000 0.90539 0.90783 0.91489 0.89214 0.88446 0.74477 0.87022 0.87183 0.92011 0.94113 0.89747 0.91416 0.96740 0.93956 0.85229 0.78418 0.72561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.78 71.98 0.63 -0.60 16 2 C 0.08 1.24 2.40 44.94 0.11 1.35 16 3 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.11 -1.65 4.85 30.65 0.15 -1.50 16 5 C 0.15 3.61 2.52 45.07 0.11 3.72 16 6 H 0.05 1.70 7.58 -2.38 -0.02 1.68 16 7 N -0.71 -18.49 5.08 -442.15 -2.25 -20.73 16 8 C 0.53 20.36 7.82 87.66 0.69 21.04 16 9 O -0.57 -27.48 15.52 -3.03 -0.05 -27.53 16 10 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 11 S -0.16 -8.83 20.57 -56.49 -1.16 -9.99 16 12 C -0.54 -31.46 9.50 67.95 0.65 -30.81 16 13 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 14 C 0.01 0.64 5.49 84.86 0.47 1.11 16 15 N -0.91 -56.86 13.22 21.65 0.29 -56.58 16 16 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 20 C -0.12 -3.04 5.67 30.65 0.17 -2.87 16 21 C 0.07 1.71 4.90 86.33 0.42 2.13 16 22 N -0.52 -8.98 4.64 -875.60 -4.06 -13.04 16 23 C 0.13 1.97 4.96 85.56 0.42 2.40 16 24 C 0.00 0.04 5.28 43.58 0.23 0.27 16 25 C -0.22 -2.47 11.12 22.40 0.25 -2.22 16 26 C -0.05 -0.49 12.30 67.18 0.83 0.33 16 27 O 0.08 1.52 11.20 71.69 0.80 2.32 16 28 N -0.40 -9.15 10.82 -49.56 -0.54 -9.69 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.48 6.55 -2.39 -0.02 0.46 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.42 7.69 8.61 -92.71 -0.80 6.89 16 35 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 36 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 1.76 5.80 -2.39 -0.01 1.75 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.04 0.72 8.08 -2.38 -0.02 0.70 16 43 H 0.13 1.16 6.84 -2.39 -0.02 1.15 16 44 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 45 H 0.26 -0.18 8.06 -2.91 -0.02 -0.20 16 Total: -1.00 -83.69 380.79 0.83 -82.85 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.21 Total: 16.74 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.56 Total: -10.35 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -6.56 Total: -100.04 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.76 Total: -25.20 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -83.69 0.83 -82.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274597447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.277 kcal (2) G-P(sol) polarization free energy of solvation -83.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds