Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47014 * 231.24860 * 3 2 1 5 5 C 1.34777 * 119.99929 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00017 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99771 * 180.02562 * 5 4 3 8 8 N 1.46904 * 109.46876 * 180.02562 * 7 5 4 9 9 C 1.46899 * 110.99801 * 179.97438 * 8 7 5 10 10 H 1.09003 * 110.64238 * 328.14546 * 9 8 7 11 11 C 1.55160 * 110.86974 * 91.39229 * 9 8 7 12 12 C 1.54909 * 101.58106 * 153.93740 * 11 9 8 13 13 N 1.47425 * 104.83141 * 322.98671 * 12 11 9 14 14 C 1.34771 * 125.64767 * 204.39712 * 13 12 11 15 15 O 1.21278 * 120.00143 * 179.69193 * 14 13 12 16 16 C 1.50706 * 119.99931 * 359.69212 * 14 13 12 17 17 S 1.81003 * 109.46955 * 180.02562 * 16 14 13 18 18 C 1.76194 * 99.99790 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00153 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99728 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47033 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47242 * 119.99415 * 22 20 18 25 25 H 1.48500 * 109.46769 * 240.00010 * 22 20 18 26 26 C 1.47026 * 108.70074 * 24.13120 * 13 12 11 27 27 H 1.08994 * 109.88320 * 239.52037 * 26 13 12 28 28 C 1.53003 * 109.87951 * 118.51177 * 26 13 12 29 29 H 4.40643 * 5.51405 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.46945 * 111.25794 * 3 2 1 31 31 H 1.08998 * 109.47442 * 351.25403 * 3 2 1 32 32 H 0.96994 * 120.00048 * 0.02562 * 4 3 2 33 33 H 1.08994 * 109.46961 * 60.00262 * 7 5 4 34 34 H 1.09003 * 109.46721 * 300.00164 * 7 5 4 35 35 H 1.00899 * 110.99870 * 56.05118 * 8 7 5 36 36 H 1.09006 * 111.00068 * 272.00747 * 11 9 8 37 37 H 1.08992 * 111.00480 * 35.81974 * 11 9 8 38 38 H 1.08996 * 110.36158 * 204.14752 * 12 11 9 39 39 H 1.09002 * 110.36956 * 81.83034 * 12 11 9 40 40 H 1.09000 * 109.46686 * 299.99326 * 16 14 13 41 41 H 1.08989 * 109.47272 * 60.00000 * 16 14 13 42 42 H 0.97003 * 119.99609 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.47015 * 61.45535 * 28 26 13 44 44 H 1.08999 * 109.46919 * 181.45025 * 28 26 13 45 45 H 1.08999 * 109.47504 * 301.45127 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8655 1.0772 5 6 4.4589 1.0198 1.2696 6 8 5.2473 0.4432 0.5507 7 6 4.9608 1.9090 2.3780 8 7 6.4298 1.9097 2.3780 9 6 6.9558 2.7684 3.4475 10 1 6.2842 3.6068 3.6324 11 6 7.1873 1.9533 4.7473 12 6 8.3009 2.7793 5.4382 13 7 9.1629 3.2459 4.3370 14 6 10.4619 3.5878 4.4472 15 8 11.0776 3.9543 3.4687 16 6 11.1494 3.5146 5.7863 17 16 12.8742 4.0336 5.6081 18 6 13.4205 3.8568 7.2739 19 1 12.7339 3.5141 8.0338 20 6 14.7330 4.1589 7.6095 21 7 15.5696 4.5771 6.6834 22 14 15.3125 3.9708 9.3754 23 1 14.1878 3.4881 10.2167 24 1 16.4271 2.9911 9.4289 25 1 15.7827 5.2841 9.8846 26 6 8.3725 3.2705 3.0975 27 1 8.8259 2.6133 2.3556 28 6 8.3022 4.6988 2.5535 29 1 -1.0502 0.0000 -0.0003 30 1 3.0091 0.3734 -0.9578 31 1 3.0098 -1.0149 0.1563 32 1 2.5034 1.3263 1.6524 33 1 4.5973 1.5361 3.3356 34 1 4.5972 2.9246 2.2218 35 1 6.7912 2.1904 1.4787 36 1 6.2846 1.9270 5.3578 37 1 7.5321 0.9448 4.5198 38 1 8.8687 2.1510 6.1244 39 1 7.8698 3.6285 5.9685 40 1 10.6429 4.1739 6.4912 41 1 11.1143 2.4903 6.1572 42 1 16.4869 4.7879 6.9179 43 1 9.3079 5.0487 2.3203 44 1 7.6937 4.7136 1.6493 45 1 7.8551 5.3516 3.3031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278221004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -5.415305 kcal Electronic energy + Delta-G solvation = -25797.722030 eV Core-core repulsion = 21943.330290 eV Total energy + Delta-G solvation = -3854.391740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39497 -39.89048 -37.67470 -36.05090 -34.94411 -33.15448 -32.41258 -31.79626 -30.98870 -28.99451 -28.12885 -26.31188 -25.46871 -24.34983 -22.82834 -21.07434 -20.86278 -19.38001 -18.89424 -17.65882 -17.43565 -16.92549 -16.57403 -16.37873 -16.14328 -15.47414 -14.99153 -14.79106 -14.63854 -14.52889 -14.05643 -13.92879 -13.88302 -13.68011 -13.50043 -13.21919 -12.82570 -12.62455 -12.50675 -12.37460 -11.89311 -11.73136 -11.50791 -11.44043 -11.21784 -11.08353 -11.05891 -10.99423 -10.83903 -10.73906 -10.24724 -9.78607 -9.63740 -9.32135 -9.05720 -8.88320 -8.47851 -8.20338 -6.47871 -6.20027 -3.90259 1.77796 2.12638 2.21617 2.78277 2.97618 3.10861 3.22763 3.27104 3.32258 3.60324 3.65030 3.84884 4.15953 4.22386 4.28579 4.44076 4.71627 4.81872 4.86264 4.96030 5.00248 5.02986 5.13685 5.15331 5.17622 5.24898 5.30594 5.38534 5.52398 5.55866 5.64522 5.70472 5.76423 5.90629 5.93517 6.01929 6.16374 6.22708 6.48874 6.57178 6.85824 6.89025 6.98052 7.61531 7.71789 7.72635 8.37167 8.60787 9.25401 10.87479 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035686 B = 0.001664 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.439750 B =16821.696294 C =17180.921674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.211 4.211 3 C 0.231 3.769 4 N -0.734 5.734 5 C 0.514 3.486 6 O -0.518 6.518 7 C 0.043 3.957 8 N -0.661 5.661 9 C 0.078 3.922 10 H 0.066 0.934 11 C -0.122 4.122 12 C 0.100 3.900 13 N -0.620 5.620 14 C 0.550 3.450 15 O -0.513 6.513 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.136 3.864 27 H 0.084 0.916 28 C -0.165 4.165 29 H 0.222 0.778 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.404 0.596 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.355 0.645 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.459 -5.949 -8.150 33.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.212 4.212 3 C 0.109 3.891 4 N -0.388 5.388 5 C 0.300 3.700 6 O -0.392 6.392 7 C -0.089 4.089 8 N -0.295 5.295 9 C -0.032 4.032 10 H 0.084 0.916 11 C -0.161 4.161 12 C -0.024 4.024 13 N -0.358 5.358 14 C 0.338 3.662 15 O -0.387 6.387 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.032 3.968 27 H 0.101 0.899 28 C -0.223 4.223 29 H 0.239 0.761 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.238 0.762 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.176 0.824 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -30.583 -6.318 -9.820 32.736 hybrid contribution -1.210 0.510 2.236 2.593 sum -31.793 -5.807 -7.584 33.197 Atomic orbital electron populations 1.25075 0.95998 0.99206 0.98407 1.22922 0.94270 1.01785 1.02210 1.18056 0.83073 0.96181 0.91813 1.45972 1.07387 1.50196 1.35255 1.20641 0.81606 0.82297 0.85461 1.90766 1.54881 1.46864 1.46643 1.21833 0.90468 0.98174 0.98446 1.60202 1.04640 1.55977 1.08670 1.22658 0.94630 0.93646 0.92248 0.91617 1.22863 0.98233 1.00060 0.94933 1.22307 0.91757 0.97883 0.90404 1.48473 1.09776 1.68287 1.09218 1.20006 0.79217 0.76034 0.90904 1.90694 1.63413 1.45338 1.39281 1.23508 1.04894 1.05097 0.96188 1.85402 0.97609 1.86502 1.13884 1.22903 0.99089 1.52107 0.94152 0.90898 1.24988 0.95563 0.94555 0.98459 1.70030 1.05298 1.42061 1.32882 0.86122 0.78691 0.77979 0.82732 1.19617 1.20560 1.20591 1.21524 0.89922 0.97271 0.88103 0.89851 1.22187 1.03927 0.95895 1.00326 0.76092 0.88970 0.88888 0.76221 0.87681 0.91904 0.82393 0.90286 0.89283 0.90050 0.91485 0.89367 0.89299 0.92252 0.90333 0.92338 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 19.25 29.55 0.57 -0.12 16 2 C -0.21 -1.13 13.46 -37.12 -0.50 -1.63 16 3 C 0.23 1.31 6.15 -6.83 -0.04 1.26 16 4 N -0.73 -3.80 5.54 -63.16 -0.35 -4.15 16 5 C 0.51 3.95 7.87 -10.98 -0.09 3.86 16 6 O -0.52 -6.26 16.20 5.56 0.09 -6.17 16 7 C 0.04 0.25 6.03 -4.97 -0.03 0.22 16 8 N -0.66 -5.62 5.97 -106.05 -0.63 -6.26 16 9 C 0.08 0.67 2.81 -65.88 -0.18 0.48 16 10 H 0.07 0.47 7.54 -51.93 -0.39 0.08 16 11 C -0.12 -1.03 6.78 -24.58 -0.17 -1.19 16 12 C 0.10 1.07 6.69 -2.53 -0.02 1.05 16 13 N -0.62 -9.02 3.06 -163.02 -0.50 -9.52 16 14 C 0.55 10.73 7.66 -10.98 -0.08 10.64 16 15 O -0.51 -11.92 14.91 5.56 0.08 -11.83 16 16 C -0.15 -3.04 5.16 36.01 0.19 -2.85 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 22 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.14 1.66 2.95 -66.95 -0.20 1.47 16 27 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 28 C -0.17 -1.96 9.12 37.16 0.34 -1.62 16 29 H 0.22 0.18 7.80 -54.08 -0.42 -0.25 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.40 1.11 8.45 -40.82 -0.34 0.76 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.24 8.08 -51.93 -0.42 -0.18 16 35 H 0.36 3.30 8.02 -39.29 -0.32 2.99 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.87 7.47 -51.93 -0.39 0.48 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 41 H 0.09 1.72 7.84 -51.92 -0.41 1.32 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.08 1.20 6.89 -51.93 -0.36 0.85 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -37.45 398.65 -8.63 -46.07 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.80 Total: 0.29 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.02 Total: -1.45 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.75 Total: -45.51 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.17 Total: -18.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.45 -8.63 -46.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278221004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.659 kcal (2) G-P(sol) polarization free energy of solvation -37.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds